Wall clock time and date at job start Mon Mar 30 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47400 * 2 1 4 4 C 1.46501 * 119.99717 * 274.84881 * 3 2 1 5 5 C 1.53000 * 109.47104 * 269.99419 * 4 3 2 6 6 N 1.46501 * 109.47104 * 179.97438 * 5 4 3 7 7 C 1.36938 * 119.99562 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00352 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99660 * 180.02562 * 7 6 5 10 10 N 1.31614 * 120.00158 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99920 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47130 * 59.99618 * 11 9 7 13 13 H 1.48498 * 109.47353 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47030 * 299.99803 * 11 9 7 15 15 C 1.34775 * 120.00104 * 94.84440 * 3 2 1 16 16 O 1.21617 * 119.99750 * 185.76919 * 15 3 2 17 17 C 1.47236 * 119.99915 * 5.77005 * 15 3 2 18 18 N 1.37035 * 127.18430 * 251.75544 * 17 15 3 19 19 H 0.97001 * 126.04457 * 0.24319 * 18 17 15 20 20 N 1.28713 * 107.92393 * 180.26181 * 18 17 15 21 21 N 1.28516 * 110.63978 * 359.97438 * 20 18 17 22 22 C 1.33310 * 109.43677 * 0.02562 * 21 20 18 23 23 C 1.50710 * 126.81350 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46690 * 300.00105 * 1 2 3 26 26 H 1.08998 * 109.47222 * 60.00055 * 1 2 3 27 27 H 1.09001 * 109.47094 * 239.99788 * 2 1 3 28 28 H 1.09005 * 109.46967 * 120.00263 * 2 1 3 29 29 H 1.09001 * 109.47266 * 29.99882 * 4 3 2 30 30 H 1.09002 * 109.47223 * 149.99844 * 4 3 2 31 31 H 1.09000 * 109.47346 * 300.00896 * 5 4 3 32 32 H 1.09006 * 109.46719 * 60.00630 * 5 4 3 33 33 H 0.96993 * 120.00021 * 0.02562 * 6 5 4 34 34 H 0.96996 * 120.00254 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46933 * 270.02116 * 23 22 21 36 36 H 1.08995 * 109.47028 * 30.02277 * 23 22 21 37 37 H 1.08999 * 109.46821 * 150.02559 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.5665 1.8812 -1.8262 6 7 3.7094 2.6070 -3.0907 7 6 4.8902 2.5521 -3.7820 8 1 5.7162 1.9740 -3.3948 9 6 5.0257 3.2402 -4.9800 10 7 4.0193 3.9450 -5.4516 11 14 6.6367 3.1658 -5.9226 12 1 6.9349 1.7563 -6.2828 13 1 6.5242 3.9792 -7.1600 14 1 7.7315 3.7023 -5.0749 15 6 2.3360 1.9836 1.1630 16 8 2.6407 3.1610 1.1745 17 6 2.3142 1.2165 2.4195 18 7 1.4027 1.3203 3.4375 19 1 0.6401 1.9192 3.4620 20 7 1.7375 0.4829 4.3559 21 7 2.7970 -0.1611 4.0174 22 6 3.2039 0.2538 2.8176 23 6 4.4047 -0.2385 2.0513 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.4219 1.7441 -1.9777 30 1 2.0067 3.1724 -1.0910 31 1 4.3061 2.2445 -1.1126 32 1 3.7213 0.8162 -1.9995 33 1 2.9676 3.1265 -3.4382 34 1 4.1139 4.4256 -6.2888 35 1 5.2746 0.3639 2.3131 36 1 4.5950 -1.2812 2.3049 37 1 4.2127 -0.1538 0.9817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715748097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:56 Heat of formation + Delta-G solvation = 71.112857 kcal Electronic energy + Delta-G solvation = -20486.137409 eV Core-core repulsion = 17301.269822 eV Total energy + Delta-G solvation = -3184.867587 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.58565 -39.91830 -36.47715 -34.72398 -34.19900 -32.71298 -31.73567 -30.48613 -28.52967 -27.48867 -24.72286 -23.80272 -23.33528 -22.25028 -21.46234 -19.88137 -18.24079 -17.49108 -17.17925 -16.68256 -15.96347 -15.29391 -14.57434 -14.36985 -14.12237 -13.88554 -13.69398 -13.32342 -13.26729 -13.02734 -12.90424 -12.73590 -12.32479 -12.05803 -11.42722 -11.40555 -11.32031 -11.09821 -10.94232 -10.79249 -10.72081 -10.28709 -10.15704 -9.77673 -9.41051 -8.91098 -8.79695 -6.98678 -5.79776 -3.09677 0.95566 1.87998 2.10581 2.47898 2.93348 3.43235 3.47709 3.48697 3.98175 4.20791 4.53217 4.58171 4.69008 4.88947 4.97132 5.14103 5.35294 5.42887 5.44591 5.47144 5.49741 5.58063 5.61788 5.66688 5.87642 5.92219 5.97388 6.01470 6.35097 6.40175 6.60757 6.75436 7.15300 7.66429 7.83522 8.06690 8.38253 9.49540 10.04112 10.38905 11.42933 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.004179 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.564460 B = 6698.098502 C = 7009.497420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 N -0.587 5.587 4 C 0.106 3.894 5 C 0.142 3.858 6 N -0.730 5.730 7 C -0.241 4.241 8 H 0.070 0.930 9 C -0.012 4.012 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C 0.588 3.412 16 O -0.510 6.510 17 C -0.045 4.045 18 N -0.368 5.368 19 H 0.453 0.547 20 N -0.060 5.060 21 N -0.262 5.262 22 C 0.027 3.973 23 C -0.079 4.079 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 -9.510 14.589 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.028 4.028 3 N -0.320 5.320 4 C -0.016 4.016 5 C 0.013 3.987 6 N -0.375 5.375 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.208 4.208 10 N -0.581 5.581 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.370 3.630 16 O -0.383 6.383 17 C -0.182 4.182 18 N -0.092 5.092 19 H 0.299 0.701 20 N -0.040 5.040 21 N -0.130 5.130 22 C -0.113 4.113 23 C -0.137 4.137 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.074 -9.547 15.905 20.232 hybrid contribution 0.281 1.003 -1.589 1.900 sum -7.793 -8.545 14.316 18.403 Atomic orbital electron populations 1.22169 0.95521 1.02519 1.02410 1.21753 0.94695 0.82169 1.04134 1.47833 1.63349 1.14674 1.06118 1.21855 0.99389 0.97943 0.82395 1.20918 0.92904 0.95618 0.89211 1.42180 1.15347 1.58783 1.21156 1.19149 0.91248 1.25256 1.01571 0.91159 1.24745 0.97815 1.00000 0.98207 1.69642 1.30611 1.35806 1.22086 0.86242 0.83138 0.77381 0.79267 1.21201 1.21638 1.21177 1.16865 0.78450 0.85811 0.81831 1.90914 1.46591 1.14739 1.86088 1.21928 0.96817 1.04732 0.94687 1.45331 1.22629 1.29234 1.12003 0.70079 1.78177 1.10944 1.01790 1.13083 1.74842 1.05395 1.20719 1.12008 1.22248 0.99430 0.95766 0.93818 1.20285 0.92326 1.02430 0.98681 0.91171 0.93225 0.91545 0.89053 0.90150 0.89765 0.89230 0.95858 0.96122 0.78222 0.93381 0.89669 0.89581 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.10 0.90 5.92 -4.04 -0.02 0.88 16 3 N -0.59 -7.38 2.47 -175.02 -0.43 -7.82 16 4 C 0.11 1.64 5.59 -4.04 -0.02 1.61 16 5 C 0.14 2.77 6.58 -4.04 -0.03 2.74 16 6 N -0.73 -18.17 5.60 -59.90 -0.34 -18.51 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 11 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.59 8.21 7.30 -12.61 -0.09 8.12 16 16 O -0.51 -9.21 16.66 5.26 0.09 -9.12 16 17 C -0.05 -0.54 5.59 -82.33 -0.46 -1.00 16 18 N -0.37 -3.70 7.07 33.31 0.24 -3.47 16 19 H 0.45 3.05 8.96 -190.33 -1.71 1.34 16 20 N -0.06 -0.71 13.35 60.35 0.81 0.09 16 21 N -0.26 -3.41 12.35 33.51 0.41 -2.99 16 22 C 0.03 0.32 6.25 -82.39 -0.51 -0.20 16 23 C -0.08 -0.77 10.08 36.01 0.36 -0.41 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.08 0.72 5.45 -51.93 -0.28 0.43 16 29 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.09 1.54 7.35 -51.93 -0.38 1.16 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.38 9.96 7.67 -40.82 -0.31 9.64 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -33.75 320.91 -5.76 -39.51 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.43 Total: 3.95 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.64 Total: 3.51 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 1.41 Total: -59.87 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.75 -5.76 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715748097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.625 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds