Wall clock time and date at job start Mon Mar 30 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47400 * 2 1 4 4 C 1.46501 * 119.99717 * 274.84881 * 3 2 1 5 5 C 1.53000 * 109.47104 * 269.99419 * 4 3 2 6 6 N 1.46501 * 109.47104 * 179.97438 * 5 4 3 7 7 C 1.36938 * 119.99562 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00352 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99660 * 180.02562 * 7 6 5 10 10 N 1.31614 * 120.00158 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99920 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47130 * 59.99618 * 11 9 7 13 13 H 1.48498 * 109.47353 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47030 * 299.99803 * 11 9 7 15 15 C 1.34775 * 120.00104 * 94.84440 * 3 2 1 16 16 O 1.21617 * 119.99750 * 185.76919 * 15 3 2 17 17 C 1.47236 * 119.99915 * 5.77005 * 15 3 2 18 18 N 1.37035 * 127.18430 * 251.75544 * 17 15 3 19 19 H 0.97001 * 126.04457 * 0.24319 * 18 17 15 20 20 N 1.28713 * 107.92393 * 180.26181 * 18 17 15 21 21 N 1.28516 * 110.63978 * 359.97438 * 20 18 17 22 22 C 1.33310 * 109.43677 * 0.02562 * 21 20 18 23 23 C 1.50710 * 126.81350 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46690 * 300.00105 * 1 2 3 26 26 H 1.08998 * 109.47222 * 60.00055 * 1 2 3 27 27 H 1.09001 * 109.47094 * 239.99788 * 2 1 3 28 28 H 1.09005 * 109.46967 * 120.00263 * 2 1 3 29 29 H 1.09001 * 109.47266 * 29.99882 * 4 3 2 30 30 H 1.09002 * 109.47223 * 149.99844 * 4 3 2 31 31 H 1.09000 * 109.47346 * 300.00896 * 5 4 3 32 32 H 1.09006 * 109.46719 * 60.00630 * 5 4 3 33 33 H 0.96993 * 120.00021 * 0.02562 * 6 5 4 34 34 H 0.96996 * 120.00254 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46933 * 270.02116 * 23 22 21 36 36 H 1.08995 * 109.47028 * 30.02277 * 23 22 21 37 37 H 1.08999 * 109.46821 * 150.02559 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1615 2.1075 -1.2642 5 6 3.5665 1.8812 -1.8262 6 7 3.7094 2.6070 -3.0907 7 6 4.8902 2.5521 -3.7820 8 1 5.7162 1.9740 -3.3948 9 6 5.0257 3.2402 -4.9800 10 7 4.0193 3.9450 -5.4516 11 14 6.6367 3.1658 -5.9226 12 1 6.9349 1.7563 -6.2828 13 1 6.5242 3.9792 -7.1600 14 1 7.7315 3.7023 -5.0749 15 6 2.3360 1.9836 1.1630 16 8 2.6407 3.1610 1.1745 17 6 2.3142 1.2165 2.4195 18 7 1.4027 1.3203 3.4375 19 1 0.6401 1.9192 3.4620 20 7 1.7375 0.4829 4.3559 21 7 2.7970 -0.1611 4.0174 22 6 3.2039 0.2538 2.8176 23 6 4.4047 -0.2385 2.0513 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.4219 1.7441 -1.9777 30 1 2.0067 3.1724 -1.0910 31 1 4.3061 2.2445 -1.1126 32 1 3.7213 0.8162 -1.9995 33 1 2.9676 3.1265 -3.4382 34 1 4.1139 4.4256 -6.2888 35 1 5.2746 0.3639 2.3131 36 1 4.5950 -1.2812 2.3049 37 1 4.2127 -0.1538 0.9817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715748097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:56 Heat of formation + Delta-G solvation = 46.006059 kcal Electronic energy + Delta-G solvation = -20487.226121 eV Core-core repulsion = 17301.269822 eV Total energy + Delta-G solvation = -3185.956300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.51440 -41.06097 -37.71506 -36.42544 -35.10320 -33.93273 -33.21392 -31.67524 -29.76466 -28.65517 -26.18308 -24.98262 -24.41953 -23.51375 -22.72214 -20.93043 -19.39675 -19.02839 -18.38631 -17.80432 -17.08160 -16.68240 -16.20156 -15.59265 -15.24720 -15.22170 -14.97271 -14.70507 -14.55670 -14.12078 -13.82001 -13.61304 -13.22577 -13.04824 -12.92479 -12.81589 -12.71297 -12.35324 -12.29114 -12.15143 -12.10825 -11.85604 -11.69069 -11.39459 -10.93828 -10.35840 -9.93907 -9.03392 -7.95186 -5.25295 0.01571 0.88606 1.15960 1.41909 1.49916 1.52594 1.58622 1.98235 2.57992 3.05615 3.29747 3.39052 3.64271 3.89569 4.00005 4.07101 4.13026 4.18804 4.34455 4.47077 4.55719 4.57169 4.67224 4.78518 4.82424 4.86556 5.03064 5.09604 5.19526 5.26093 5.35875 5.50223 5.62946 6.07482 6.26248 6.72788 7.13704 7.33243 8.05110 8.29153 9.27916 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.004179 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.564460 B = 6698.098502 C = 7009.497420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.577 5.577 4 C 0.121 3.879 5 C 0.146 3.854 6 N -0.743 5.743 7 C -0.249 4.249 8 H 0.076 0.924 9 C -0.071 4.071 10 N -0.968 5.968 11 Si 0.974 3.026 12 H -0.274 1.274 13 H -0.295 1.295 14 H -0.281 1.281 15 C 0.594 3.406 16 O -0.557 6.557 17 C -0.052 4.052 18 N -0.349 5.349 19 H 0.466 0.534 20 N -0.061 5.061 21 N -0.282 5.282 22 C 0.030 3.970 23 C -0.080 4.080 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.006 0.994 32 H 0.037 0.963 33 H 0.376 0.624 34 H 0.252 0.748 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 -11.150 15.044 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.309 5.309 4 C -0.002 4.002 5 C 0.018 3.982 6 N -0.386 5.386 7 C -0.380 4.380 8 H 0.094 0.906 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.199 1.199 13 H -0.221 1.221 14 H -0.207 1.207 15 C 0.378 3.622 16 O -0.434 6.434 17 C -0.189 4.189 18 N -0.076 5.076 19 H 0.316 0.684 20 N -0.042 5.042 21 N -0.149 5.149 22 C -0.110 4.110 23 C -0.139 4.139 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.208 0.792 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.144 -11.247 16.404 21.492 hybrid contribution 0.263 1.470 -1.649 2.224 sum -7.880 -9.777 14.755 19.375 Atomic orbital electron populations 1.22149 0.94092 1.03769 1.02253 1.22015 0.95829 0.80079 1.05062 1.47823 1.62562 1.15724 1.04753 1.21505 0.97442 0.97404 0.83830 1.20993 0.94880 0.95483 0.86800 1.42367 1.14392 1.59236 1.22652 1.19555 0.92242 1.24511 1.01710 0.90621 1.25562 1.01081 1.00272 0.99444 1.69794 1.32573 1.37039 1.22388 0.85214 0.79295 0.77699 0.77565 1.19935 1.22093 1.20693 1.17038 0.77393 0.85213 0.82597 1.90896 1.48821 1.16878 1.86810 1.21603 0.97825 1.05048 0.94384 1.45330 1.22561 1.28729 1.10973 0.68413 1.78136 1.10876 1.01969 1.13201 1.74852 1.05978 1.21528 1.12541 1.22556 0.99604 0.95289 0.93540 1.20386 0.91519 1.03585 0.98374 0.89208 0.93143 0.91984 0.88094 0.89239 0.87800 0.91265 0.97583 0.94476 0.79204 0.93881 0.89643 0.87694 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.09 1.51 5.92 86.38 0.51 2.02 16 3 N -0.58 -13.79 2.47 -825.90 -2.04 -15.83 16 4 C 0.12 3.65 5.59 86.38 0.48 4.14 16 5 C 0.15 5.60 6.58 86.38 0.57 6.17 16 6 N -0.74 -37.05 5.60 -343.44 -1.92 -38.97 16 7 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 10 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 11 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 C 0.59 16.18 7.30 86.61 0.63 16.81 16 16 O -0.56 -20.33 16.66 -4.09 -0.07 -20.40 16 17 C -0.05 -1.17 5.59 40.41 0.23 -0.95 16 18 N -0.35 -6.49 7.07 -48.52 -0.34 -6.84 16 19 H 0.47 5.57 8.96 -219.90 -1.97 3.60 16 20 N -0.06 -1.37 13.35 37.02 0.49 -0.88 16 21 N -0.28 -6.88 12.35 -47.88 -0.59 -7.47 16 22 C 0.03 0.67 6.25 42.05 0.26 0.93 16 23 C -0.08 -1.44 10.08 71.24 0.72 -0.72 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 1.52 8.11 -2.39 -0.02 1.50 16 28 H 0.09 1.36 5.45 -2.38 -0.01 1.35 16 29 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 30 H 0.07 2.42 7.35 -2.39 -0.02 2.40 16 31 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.38 19.73 7.67 -92.71 -0.71 19.02 16 34 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.46 7.70 -2.39 -0.02 1.44 16 Total: -1.00 -71.89 320.91 1.70 -70.19 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -1.58 Total: 20.33 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.44 Total: 10.49 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -4.12 Total: -128.09 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -71.89 1.70 -70.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715748097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.195 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds