Wall clock time and date at job start Mon Mar 30 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47307 * 2 1 4 4 N 1.28706 * 126.03369 * 274.46042 * 3 2 1 5 5 N 1.28514 * 110.63686 * 179.77991 * 4 3 2 6 6 C 1.33318 * 109.43883 * 0.39622 * 5 4 3 7 7 C 1.37009 * 106.37263 * 359.62141 * 6 5 4 8 8 C 1.47229 * 127.19100 * 180.20759 * 7 6 5 9 9 O 1.21618 * 120.00055 * 174.57011 * 8 7 6 10 10 N 1.34780 * 119.99676 * 354.57111 * 8 7 6 11 11 C 1.46501 * 119.99817 * 185.14213 * 10 8 7 12 12 H 1.09001 * 109.47198 * 324.99939 * 11 10 8 13 13 C 1.52998 * 109.47373 * 84.99725 * 11 10 8 14 14 C 1.52999 * 109.47165 * 205.00008 * 11 10 8 15 15 N 1.46491 * 109.47112 * 54.99871 * 14 11 10 16 16 C 1.36940 * 119.99713 * 179.97438 * 15 14 11 17 17 H 1.07993 * 120.00504 * 0.02562 * 16 15 14 18 18 C 1.38821 * 119.99997 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99555 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46899 * 90.00337 * 20 18 16 22 22 H 1.48505 * 109.47020 * 210.00063 * 20 18 16 23 23 H 1.48497 * 109.47271 * 330.00519 * 20 18 16 24 24 H 1.09005 * 109.46348 * 60.00596 * 1 2 3 25 25 H 1.09000 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47087 * 300.00517 * 1 2 3 27 27 H 1.08999 * 109.47509 * 239.99345 * 2 1 3 28 28 H 1.09001 * 109.46886 * 119.99893 * 2 1 3 29 29 H 1.07999 * 126.81559 * 179.88278 * 6 5 4 30 30 H 0.96997 * 120.00245 * 5.13936 * 10 8 7 31 31 H 1.08998 * 109.47675 * 180.02562 * 13 11 10 32 32 H 1.09004 * 109.47100 * 300.00150 * 13 11 10 33 33 H 1.09007 * 109.47214 * 59.99868 * 13 11 10 34 34 H 1.09000 * 109.46948 * 175.00198 * 14 11 10 35 35 H 1.08999 * 109.46942 * 294.99252 * 14 11 10 36 36 H 0.97001 * 120.00489 * 359.97438 * 15 14 11 37 37 H 0.97002 * 119.99715 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1945 2.1220 -1.0377 5 7 2.6282 3.2828 -0.6971 6 6 2.7621 3.3352 0.6283 7 6 2.3689 2.1123 1.1048 8 6 2.3312 1.6749 2.5101 9 8 1.8646 0.5890 2.7967 10 7 2.8138 2.4781 3.4789 11 6 2.8802 1.9991 4.8619 12 1 2.0278 1.3501 5.0629 13 6 4.1778 1.2153 5.0684 14 6 2.8482 3.1936 5.8174 15 7 1.6647 4.0106 5.5384 16 6 1.4238 5.1404 6.2738 17 1 2.1064 5.4293 7.0591 18 6 0.3025 5.9149 6.0090 19 7 -0.5292 5.5630 5.0515 20 14 -0.0257 7.4564 7.0117 21 1 0.6258 8.6200 6.3583 22 1 -1.4899 7.6908 7.0941 23 1 0.5258 7.2840 8.3796 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.1076 4.1762 1.2111 30 1 3.1171 3.3731 3.2606 31 1 4.2270 0.8586 6.0972 32 1 4.2006 0.3643 4.3877 33 1 5.0302 1.8643 4.8674 34 1 2.8080 2.8351 6.8459 35 1 3.7463 3.7951 5.6772 36 1 1.0517 3.7514 4.8327 37 1 -1.3125 6.1044 4.8662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715974732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:28 Heat of formation + Delta-G solvation = 68.251219 kcal Electronic energy + Delta-G solvation = -20507.308188 eV Core-core repulsion = 17322.316511 eV Total energy + Delta-G solvation = -3184.991677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.26501 -39.53415 -36.43262 -35.39363 -33.75438 -32.18818 -30.84744 -30.76405 -29.78245 -25.80948 -24.92715 -23.84734 -22.77890 -22.17422 -20.56102 -20.31412 -18.13509 -17.12740 -16.85459 -16.40480 -15.92427 -14.99059 -14.85377 -14.72387 -14.17703 -13.92140 -13.71010 -13.34205 -13.05041 -12.55747 -12.37128 -12.33027 -12.28739 -12.01438 -11.75545 -11.66785 -10.99177 -10.96785 -10.86973 -10.56190 -10.23492 -10.11069 -9.98013 -9.80061 -9.47306 -8.98712 -8.89149 -7.02598 -5.82918 -3.13542 0.97844 2.08019 2.35041 3.17250 3.22190 3.40145 3.45475 3.47386 4.30703 4.46699 4.53851 4.71443 4.73483 4.99785 5.02906 5.14949 5.30804 5.35266 5.40769 5.47877 5.55047 5.73888 5.88202 5.92346 5.96988 6.00567 6.08530 6.27207 6.34001 6.40701 6.57556 6.75808 7.55783 7.63653 8.16633 8.34452 8.37784 9.46527 10.00944 10.35877 11.39145 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.005129 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.672837 B = 5458.126249 C = 6101.849142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.254 5.254 4 N -0.066 5.066 5 N -0.276 5.276 6 C 0.005 3.995 7 C -0.064 4.064 8 C 0.597 3.403 9 O -0.543 6.543 10 N -0.691 5.691 11 C 0.134 3.866 12 H 0.092 0.908 13 C -0.158 4.158 14 C 0.144 3.856 15 N -0.732 5.732 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.199 0.801 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.386 0.614 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -11.270 -7.187 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.052 5.052 4 N -0.046 5.046 5 N -0.138 5.138 6 C -0.155 4.155 7 C -0.198 4.198 8 C 0.381 3.619 9 O -0.421 6.421 10 N -0.341 5.341 11 C 0.030 3.970 12 H 0.110 0.890 13 C -0.217 4.217 14 C 0.016 3.984 15 N -0.377 5.377 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.140 0.860 29 H 0.216 0.784 30 H 0.244 0.756 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.220 0.780 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.263 -11.877 -8.373 16.246 hybrid contribution -0.353 1.179 1.347 1.825 sum 6.911 -10.697 -7.026 14.545 Atomic orbital electron populations 1.22095 0.92593 1.03920 1.03730 1.22375 0.96964 0.75774 1.06306 1.47835 1.40132 1.13561 1.03646 1.78201 1.16252 0.98241 1.11911 1.74881 1.15556 1.10648 1.12733 1.23961 1.02527 0.97080 0.91940 1.22024 1.11944 0.94657 0.91204 1.16645 0.78106 0.84609 0.82566 1.90759 1.46229 1.22134 1.82991 1.45687 1.63123 1.17691 1.07637 1.21366 0.98840 0.97129 0.79633 0.89005 1.22119 0.97212 1.00106 1.02256 1.20996 0.91781 0.90091 0.95568 1.42356 1.25378 1.27454 1.42545 1.19199 1.06100 1.00055 1.12325 0.91066 1.24762 0.97517 0.99422 0.98959 1.69666 1.14971 1.40114 1.33030 0.86187 0.77167 0.83236 0.79539 1.21630 1.21781 1.20732 0.91606 0.89662 0.90996 0.87886 0.86025 0.78386 0.75602 0.91269 0.92536 0.92296 0.94579 0.95559 0.78016 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 37.16 0.38 -1.30 16 2 C 0.11 1.12 6.68 -4.04 -0.03 1.10 16 3 N -0.25 -3.55 3.39 -57.37 -0.19 -3.74 16 4 N -0.07 -1.01 13.14 60.35 0.79 -0.22 16 5 N -0.28 -4.43 12.35 30.47 0.38 -4.05 16 6 C 0.01 0.08 11.54 -17.35 -0.20 -0.12 16 7 C -0.06 -0.95 6.98 -82.33 -0.57 -1.52 16 8 C 0.60 9.24 7.76 -12.61 -0.10 9.14 16 9 O -0.54 -9.26 14.46 5.26 0.08 -9.18 16 10 N -0.69 -10.19 4.51 -54.94 -0.25 -10.44 16 11 C 0.13 2.04 2.78 -67.93 -0.19 1.85 16 12 H 0.09 1.57 7.51 -51.93 -0.39 1.18 16 13 C -0.16 -1.90 9.48 37.16 0.35 -1.54 16 14 C 0.14 2.59 5.82 -4.05 -0.02 2.56 16 15 N -0.73 -17.30 5.43 -59.91 -0.33 -17.63 16 16 C -0.25 -6.56 9.99 -15.05 -0.15 -6.71 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.12 1.33 6.33 -51.93 -0.33 1.00 16 29 H 0.20 2.31 7.56 -52.49 -0.40 1.91 16 30 H 0.41 5.67 7.64 -40.82 -0.31 5.36 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.39 9.80 7.33 -40.82 -0.30 9.50 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -32.20 319.77 -4.71 -36.90 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.08 Total: 10.40 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.63 Total: 3.08 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 1.13 Total: -62.86 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.20 -4.71 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715974732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.156 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds