Wall clock time and date at job start Mon Mar 30 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47307 * 2 1 4 4 N 1.28706 * 126.03369 * 274.46042 * 3 2 1 5 5 N 1.28514 * 110.63686 * 179.77991 * 4 3 2 6 6 C 1.33318 * 109.43883 * 0.39622 * 5 4 3 7 7 C 1.37009 * 106.37263 * 359.62141 * 6 5 4 8 8 C 1.47229 * 127.19100 * 180.20759 * 7 6 5 9 9 O 1.21618 * 120.00055 * 174.57011 * 8 7 6 10 10 N 1.34780 * 119.99676 * 354.57111 * 8 7 6 11 11 C 1.46501 * 119.99817 * 185.14213 * 10 8 7 12 12 H 1.09001 * 109.47198 * 324.99939 * 11 10 8 13 13 C 1.52998 * 109.47373 * 84.99725 * 11 10 8 14 14 C 1.52999 * 109.47165 * 205.00008 * 11 10 8 15 15 N 1.46491 * 109.47112 * 54.99871 * 14 11 10 16 16 C 1.36940 * 119.99713 * 179.97438 * 15 14 11 17 17 H 1.07993 * 120.00504 * 0.02562 * 16 15 14 18 18 C 1.38821 * 119.99997 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99555 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46899 * 90.00337 * 20 18 16 22 22 H 1.48505 * 109.47020 * 210.00063 * 20 18 16 23 23 H 1.48497 * 109.47271 * 330.00519 * 20 18 16 24 24 H 1.09005 * 109.46348 * 60.00596 * 1 2 3 25 25 H 1.09000 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47087 * 300.00517 * 1 2 3 27 27 H 1.08999 * 109.47509 * 239.99345 * 2 1 3 28 28 H 1.09001 * 109.46886 * 119.99893 * 2 1 3 29 29 H 1.07999 * 126.81559 * 179.88278 * 6 5 4 30 30 H 0.96997 * 120.00245 * 5.13936 * 10 8 7 31 31 H 1.08998 * 109.47675 * 180.02562 * 13 11 10 32 32 H 1.09004 * 109.47100 * 300.00150 * 13 11 10 33 33 H 1.09007 * 109.47214 * 59.99868 * 13 11 10 34 34 H 1.09000 * 109.46948 * 175.00198 * 14 11 10 35 35 H 1.08999 * 109.46942 * 294.99252 * 14 11 10 36 36 H 0.97001 * 120.00489 * 359.97438 * 15 14 11 37 37 H 0.97002 * 119.99715 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1945 2.1220 -1.0377 5 7 2.6282 3.2828 -0.6971 6 6 2.7621 3.3352 0.6283 7 6 2.3689 2.1123 1.1048 8 6 2.3312 1.6749 2.5101 9 8 1.8646 0.5890 2.7967 10 7 2.8138 2.4781 3.4789 11 6 2.8802 1.9991 4.8619 12 1 2.0278 1.3501 5.0629 13 6 4.1778 1.2153 5.0684 14 6 2.8482 3.1936 5.8174 15 7 1.6647 4.0106 5.5384 16 6 1.4238 5.1404 6.2738 17 1 2.1064 5.4293 7.0591 18 6 0.3025 5.9149 6.0090 19 7 -0.5292 5.5630 5.0515 20 14 -0.0257 7.4564 7.0117 21 1 0.6258 8.6200 6.3583 22 1 -1.4899 7.6908 7.0941 23 1 0.5258 7.2840 8.3796 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.1076 4.1762 1.2111 30 1 3.1171 3.3731 3.2606 31 1 4.2270 0.8586 6.0972 32 1 4.2006 0.3643 4.3877 33 1 5.0302 1.8643 4.8674 34 1 2.8080 2.8351 6.8459 35 1 3.7463 3.7951 5.6772 36 1 1.0517 3.7514 4.8327 37 1 -1.3125 6.1044 4.8662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715974732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:28 Heat of formation + Delta-G solvation = 44.478663 kcal Electronic energy + Delta-G solvation = -20508.339044 eV Core-core repulsion = 17322.316511 eV Total energy + Delta-G solvation = -3186.022532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.39997 -40.78232 -37.80357 -36.47336 -35.44785 -33.55781 -32.39633 -31.82272 -31.08623 -27.40839 -26.02130 -24.98687 -24.41923 -23.40501 -21.78501 -21.51631 -19.45052 -18.89935 -18.00967 -17.53383 -17.21399 -16.64575 -16.08257 -15.85261 -15.51194 -15.22504 -15.17105 -14.89813 -14.02498 -13.96791 -13.62690 -13.55544 -13.24727 -13.22916 -13.03092 -12.76603 -12.69270 -12.61254 -12.13730 -12.02395 -11.87987 -11.68836 -11.33937 -11.21913 -10.93427 -10.64966 -10.12367 -8.98806 -7.92829 -5.21786 -0.17241 1.04150 1.17960 1.50725 1.51158 1.59544 1.96864 2.07203 2.58029 3.24850 3.40251 3.43324 3.67086 3.82245 3.88006 3.94642 4.05840 4.22438 4.31337 4.33968 4.52893 4.60891 4.79198 4.81275 4.89111 4.94858 4.97847 5.07814 5.12629 5.33634 5.36364 5.48208 5.54514 6.27890 6.35265 6.96320 7.21912 7.35955 8.10080 8.32281 9.30006 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.005129 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.672837 B = 5458.126249 C = 6101.849142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.248 5.248 4 N -0.074 5.074 5 N -0.300 5.300 6 C 0.008 3.992 7 C -0.076 4.076 8 C 0.599 3.401 9 O -0.562 6.562 10 N -0.687 5.687 11 C 0.143 3.857 12 H 0.070 0.930 13 C -0.147 4.147 14 C 0.143 3.857 15 N -0.744 5.744 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.970 3.030 21 H -0.287 1.287 22 H -0.302 1.302 23 H -0.268 1.268 24 H 0.064 0.936 25 H 0.115 0.885 26 H 0.041 0.959 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.220 0.780 30 H 0.413 0.587 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.374 0.626 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -11.715 -6.706 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.046 5.046 4 N -0.054 5.054 5 N -0.162 5.162 6 C -0.153 4.153 7 C -0.211 4.211 8 C 0.383 3.617 9 O -0.441 6.441 10 N -0.338 5.338 11 C 0.038 3.962 12 H 0.088 0.912 13 C -0.206 4.206 14 C 0.016 3.984 15 N -0.388 5.388 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.800 3.200 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.193 1.193 24 H 0.083 0.917 25 H 0.133 0.867 26 H 0.060 0.940 27 H 0.152 0.848 28 H 0.138 0.862 29 H 0.237 0.763 30 H 0.249 0.751 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.206 0.794 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.692 -12.337 -7.872 17.021 hybrid contribution -0.737 1.229 1.223 1.884 sum 7.955 -11.108 -6.649 15.195 Atomic orbital electron populations 1.22074 0.92243 1.05374 1.02060 1.22705 0.97193 0.74425 1.07741 1.48154 1.39071 1.14325 1.03083 1.78140 1.16557 0.98404 1.12346 1.74858 1.16607 1.11201 1.13572 1.24357 1.01734 0.97575 0.91595 1.22015 1.12837 0.95127 0.91108 1.16690 0.77735 0.84380 0.82884 1.90747 1.47098 1.22959 1.83318 1.45650 1.62832 1.17863 1.07422 1.21243 0.99919 0.95814 0.79192 0.91228 1.22035 0.95558 0.99767 1.03236 1.21181 0.90096 0.90541 0.96533 1.42545 1.26840 1.27472 1.41908 1.19630 1.05492 1.00314 1.11789 0.90121 1.25516 0.97975 1.02599 1.00475 1.69826 1.15556 1.41403 1.35157 0.85190 0.76171 0.79928 0.78750 1.21386 1.22912 1.19331 0.91732 0.86700 0.94018 0.84778 0.86229 0.76303 0.75051 0.89751 0.92592 0.90734 0.93959 0.93769 0.79414 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.24 71.98 0.74 -2.37 16 2 C 0.10 1.96 6.68 86.38 0.58 2.54 16 3 N -0.25 -6.76 3.39 -335.42 -1.14 -7.90 16 4 N -0.07 -2.24 13.14 37.02 0.49 -1.76 16 5 N -0.30 -9.53 12.35 -57.50 -0.71 -10.24 16 6 C 0.01 0.23 11.54 84.18 0.97 1.21 16 7 C -0.08 -2.22 6.98 40.41 0.28 -1.94 16 8 C 0.60 18.28 7.76 86.61 0.67 18.95 16 9 O -0.56 -19.04 14.46 -4.09 -0.06 -19.10 16 10 N -0.69 -19.65 4.51 -445.99 -2.01 -21.66 16 11 C 0.14 4.13 2.78 44.99 0.12 4.26 16 12 H 0.07 2.36 7.51 -2.39 -0.02 2.34 16 13 C -0.15 -3.16 9.48 71.98 0.68 -2.47 16 14 C 0.14 4.89 5.82 86.38 0.50 5.39 16 15 N -0.74 -34.68 5.43 -343.47 -1.87 -36.54 16 16 C -0.24 -12.59 9.99 84.04 0.84 -11.75 16 17 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 19 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 20 Si 0.97 44.84 29.55 68.60 2.03 46.87 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.12 2.49 6.33 -2.39 -0.02 2.48 16 29 H 0.22 4.89 7.56 -2.91 -0.02 4.86 16 30 H 0.41 11.00 7.64 -92.71 -0.71 10.30 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.37 19.10 7.33 -92.71 -0.68 18.42 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -68.60 319.77 2.58 -66.02 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.29 Total: 31.86 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.86 Total: 10.21 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -4.96 Total: -135.87 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.60 2.58 -66.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715974732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.499 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds