Wall clock time and date at job start Mon Mar 30 2020 00:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 O 1.21288 * 120.00038 * 239.99878 * 4 2 1 6 6 N 1.34777 * 120.00369 * 59.99719 * 4 2 1 7 7 C 1.46505 * 120.00115 * 180.02562 * 6 4 2 8 8 H 1.08993 * 109.46761 * 324.99835 * 7 6 4 9 9 C 1.52997 * 109.47044 * 84.99797 * 7 6 4 10 10 C 1.52994 * 109.46845 * 204.99901 * 7 6 4 11 11 N 1.46504 * 109.47311 * 55.00170 * 10 7 6 12 12 C 1.36936 * 120.00038 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00177 * 359.97438 * 12 11 10 14 14 C 1.38818 * 119.99860 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99701 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47557 * 60.00228 * 16 14 12 18 18 H 1.48496 * 109.46949 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47273 * 299.99845 * 16 14 12 20 20 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 21 21 C 1.34426 * 126.82481 * 35.00401 * 20 2 1 22 22 N 1.30830 * 108.08044 * 179.97438 * 21 20 2 23 23 C 1.33247 * 109.82510 * 359.97438 * 22 21 20 24 24 N 1.30710 * 108.94557 * 359.75370 * 23 22 21 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.96995 * 119.99691 * 359.97438 * 6 4 2 29 29 H 1.09006 * 109.47005 * 60.00297 * 9 7 6 30 30 H 1.09001 * 109.47296 * 179.97438 * 9 7 6 31 31 H 1.08992 * 109.47522 * 300.00006 * 9 7 6 32 32 H 1.09005 * 109.47041 * 174.99778 * 10 7 6 33 33 H 1.09005 * 109.47662 * 294.99798 * 10 7 6 34 34 H 0.97003 * 119.99693 * 359.97438 * 11 10 7 35 35 H 0.96994 * 119.99909 * 179.97438 * 15 14 12 36 36 H 1.07998 * 125.96455 * 359.92465 * 21 20 2 37 37 H 1.08002 * 125.52276 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1948 -0.9406 -3.6508 8 1 3.1938 -1.3331 -3.4615 9 6 1.2503 -2.0942 -3.9944 10 6 2.2464 0.0424 -4.8220 11 7 3.0553 1.2053 -4.4483 12 6 3.2447 2.2239 -5.3437 13 1 2.7981 2.1699 -6.3255 14 6 4.0107 3.3261 -4.9893 15 7 4.5554 3.3917 -3.7929 16 14 4.2696 4.7152 -6.2110 17 1 2.9556 5.2970 -6.5849 18 1 5.1188 5.7654 -5.5937 19 1 4.9410 4.1873 -7.4259 20 7 2.0184 -0.6906 1.1961 21 6 1.4559 -1.7519 1.7997 22 7 2.1938 -2.0701 2.8321 23 6 3.2316 -1.2388 2.9193 24 7 3.1708 -0.3797 1.9361 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.1489 0.5386 -2.5435 29 1 0.2512 -1.7017 -4.1837 30 1 1.6131 -2.6080 -4.8847 31 1 1.2135 -2.7945 -3.1601 32 1 2.6923 -0.4471 -5.6879 33 1 1.2355 0.3671 -5.0688 34 1 3.4567 1.2537 -3.5665 35 1 5.0909 4.1616 -3.5455 36 1 0.5521 -2.2539 1.4875 37 1 4.0007 -1.2725 3.6767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716434044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:33 Heat of formation + Delta-G solvation = 43.292987 kcal Electronic energy + Delta-G solvation = -20424.244774 eV Core-core repulsion = 17238.170827 eV Total energy + Delta-G solvation = -3186.073947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.11249 -41.01177 -37.85477 -36.04676 -35.51459 -33.17257 -32.35869 -31.75938 -30.49534 -27.43319 -26.24186 -24.61756 -23.67485 -22.86979 -21.98257 -21.27877 -19.35236 -18.68480 -18.21128 -17.09885 -16.71773 -16.49987 -16.15120 -15.95218 -15.41299 -15.25120 -15.12449 -14.86329 -14.02785 -13.90828 -13.65604 -13.43805 -13.38291 -13.27310 -13.08359 -12.75366 -12.65230 -12.48223 -12.21022 -11.91347 -11.72538 -11.48801 -11.05375 -10.97329 -10.80631 -10.51717 -10.15333 -9.03230 -7.95730 -5.25748 0.60620 1.20141 1.42344 1.48313 1.50755 1.56952 1.99213 2.17939 2.55602 3.35135 3.39593 3.45081 3.56361 3.78507 3.82671 3.95409 4.03324 4.27318 4.29642 4.49454 4.61041 4.67541 4.78785 4.86580 4.93634 5.04761 5.09981 5.22990 5.30607 5.46270 5.48592 5.51341 5.82222 6.24568 6.43990 7.06950 7.10163 7.32160 8.05659 8.28333 9.27050 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.004678 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.690220 B = 5984.105339 C = 6741.351965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.127 0.873 4 C 0.505 3.495 5 O -0.576 6.576 6 N -0.694 5.694 7 C 0.141 3.859 8 H 0.051 0.949 9 C -0.144 4.144 10 C 0.145 3.855 11 N -0.745 5.745 12 C -0.246 4.246 13 H 0.081 0.919 14 C -0.072 4.072 15 N -0.970 5.970 16 Si 0.973 3.027 17 H -0.272 1.272 18 H -0.300 1.300 19 H -0.281 1.281 20 N -0.366 5.366 21 C 0.270 3.730 22 N -0.571 5.571 23 C 0.193 3.807 24 N -0.358 5.358 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.414 0.586 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.373 0.627 35 H 0.250 0.750 36 H 0.253 0.747 37 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 -8.845 7.204 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.031 3.969 3 H 0.145 0.855 4 C 0.289 3.711 5 O -0.456 6.456 6 N -0.345 5.345 7 C 0.036 3.964 8 H 0.069 0.931 9 C -0.203 4.203 10 C 0.018 3.982 11 N -0.389 5.389 12 C -0.377 4.377 13 H 0.099 0.901 14 C -0.265 4.265 15 N -0.620 5.620 16 Si 0.802 3.198 17 H -0.198 1.198 18 H -0.227 1.227 19 H -0.207 1.207 20 N -0.156 5.156 21 C -0.026 4.026 22 N -0.299 5.299 23 C -0.109 4.109 24 N -0.185 5.185 25 H 0.109 0.891 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.251 0.749 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.269 0.731 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -13.061 -9.113 7.121 17.445 hybrid contribution 0.756 1.223 -0.473 1.514 sum -12.305 -7.890 6.647 16.058 Atomic orbital electron populations 1.22242 0.86027 1.05893 1.06740 1.21436 0.99201 0.97145 0.79092 0.85538 1.20976 0.79981 0.84455 0.85652 1.90728 1.39204 1.28505 1.87134 1.45836 1.52533 1.31785 1.04387 1.21122 0.97979 0.93217 0.84090 0.93054 1.21988 0.99775 0.96484 1.02021 1.21163 0.95348 0.87027 0.94648 1.42557 1.60919 1.19448 1.15930 1.19614 1.25125 0.96956 0.96025 0.90101 1.25552 1.00936 1.01469 0.98534 1.69821 1.39496 1.31530 1.21199 0.85228 0.77730 0.78786 0.78087 1.19807 1.22680 1.20734 1.50169 1.18317 1.25130 1.21952 1.26631 0.99750 0.87120 0.89051 1.70567 1.07918 1.29298 1.22134 1.26578 0.97684 0.89576 0.97101 1.78057 1.04175 1.27062 1.09159 0.89127 0.88597 0.87028 0.74864 0.89994 0.90479 0.92835 0.94631 0.93349 0.79560 0.94144 0.73147 0.74143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.75 71.98 0.63 -1.12 16 2 C 0.14 3.21 3.77 44.25 0.17 3.38 16 3 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 4 C 0.50 15.11 7.19 87.66 0.63 15.74 16 5 O -0.58 -22.43 16.08 -3.05 -0.05 -22.48 16 6 N -0.69 -19.18 4.41 -442.54 -1.95 -21.13 16 7 C 0.14 4.30 2.73 44.99 0.12 4.42 16 8 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 9 C -0.14 -3.23 9.48 71.98 0.68 -2.54 16 10 C 0.14 5.10 5.82 86.38 0.50 5.60 16 11 N -0.75 -35.49 5.43 -343.44 -1.87 -37.36 16 12 C -0.25 -13.01 9.99 84.04 0.84 -12.17 16 13 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 14 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 15 N -0.97 -58.55 13.06 21.65 0.28 -58.26 16 16 Si 0.97 44.80 29.55 68.60 2.03 46.82 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 N -0.37 -10.00 3.04 -335.03 -1.02 -11.02 16 21 C 0.27 6.31 11.77 180.36 2.12 8.43 16 22 N -0.57 -15.60 11.19 -204.00 -2.28 -17.88 16 23 C 0.19 5.35 13.03 180.76 2.36 7.70 16 24 N -0.36 -11.68 12.70 -61.24 -0.78 -12.46 16 25 H 0.09 0.76 7.22 -2.39 -0.02 0.74 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.11 0.95 7.56 -2.39 -0.02 0.93 16 28 H 0.41 9.98 8.02 -92.71 -0.74 9.24 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.37 19.52 7.33 -92.71 -0.68 18.84 16 35 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.25 3.30 7.32 -2.91 -0.02 3.28 16 37 H 0.24 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -78.20 321.04 2.55 -75.65 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.33 Total: 32.25 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 8.52 Total: 25.87 kcal Atomic # 7 Polarization: -150.50 SS G_CDS: -7.61 Total: -158.11 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -78.20 2.55 -75.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716434044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.942 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds