Wall clock time and date at job start Mon Mar 30 2020 00:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.08995 * 109.47843 * 300.00405 * 13 2 1 15 15 C 1.52998 * 109.47053 * 179.97438 * 13 2 1 16 16 N 1.46504 * 109.47143 * 60.00410 * 13 2 1 17 17 C 1.34774 * 120.00240 * 204.99720 * 16 13 2 18 18 O 1.21283 * 119.99643 * 359.97438 * 17 16 13 19 19 C 1.50694 * 119.99993 * 179.97438 * 17 16 13 20 20 N 1.46507 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.34430 * 126.82273 * 124.99748 * 20 19 17 22 22 N 1.30830 * 108.07355 * 179.97438 * 21 20 19 23 23 C 1.33240 * 109.83164 * 359.97438 * 22 21 20 24 24 N 1.30709 * 108.94498 * 359.75587 * 23 22 21 25 25 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 26 26 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 28 28 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 29 29 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47233 * 180.02562 * 15 13 2 31 31 H 1.09002 * 109.47294 * 299.99979 * 15 13 2 32 32 H 1.08998 * 109.47317 * 60.00192 * 15 13 2 33 33 H 0.97005 * 119.99919 * 24.99503 * 16 13 2 34 34 H 1.08998 * 109.47224 * 299.99698 * 19 17 16 35 35 H 1.08992 * 109.47529 * 60.00354 * 19 17 16 36 36 H 1.07998 * 125.96123 * 0.02562 * 21 20 19 37 37 H 1.08005 * 125.52478 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.4626 0.8103 5.5266 11 1 3.2862 -0.6517 6.1717 12 1 3.7440 1.3872 4.9407 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2493 15 6 3.5699 -0.7208 -1.2495 16 7 1.5517 -0.0307 -2.4454 17 6 1.4230 -0.7030 -3.6064 18 8 1.7119 -1.8797 -3.6609 19 6 0.9202 0.0072 -4.8367 20 7 0.8705 -0.9343 -5.9581 21 6 -0.1958 -1.2161 -6.7267 22 7 0.1683 -2.1040 -7.6160 23 6 1.4537 -2.4116 -7.4477 24 7 1.9290 -1.7166 -6.4478 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6319 1.1526 29 1 3.2330 -2.4001 4.2460 30 1 3.9333 -1.2343 -2.1397 31 1 3.9329 0.3070 -1.2498 32 1 3.9337 -1.2343 -0.3595 33 1 1.3210 0.9105 -2.4019 34 1 -0.0791 0.3990 -4.6471 35 1 1.5924 0.8295 -5.0818 36 1 -1.1807 -0.7842 -6.6280 37 1 2.0133 -3.1177 -8.0433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717437615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:20 Heat of formation + Delta-G solvation = 71.348537 kcal Electronic energy + Delta-G solvation = -20048.881432 eV Core-core repulsion = 16864.024064 eV Total energy + Delta-G solvation = -3184.857367 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19751 -39.78313 -36.88604 -34.16679 -34.04200 -31.87418 -31.32103 -29.90702 -28.51548 -27.84291 -24.05920 -23.27361 -22.12471 -22.10977 -20.45198 -20.08104 -17.77406 -17.49554 -17.18747 -15.91376 -15.66515 -15.15881 -14.88335 -14.61121 -14.17934 -13.84067 -13.70128 -13.46892 -13.17075 -12.90174 -12.48857 -12.00677 -11.91453 -11.75516 -11.24964 -11.01593 -10.87640 -10.75572 -10.37528 -10.29265 -10.17175 -9.98502 -9.89762 -9.79072 -9.54864 -9.10325 -8.86793 -7.05372 -5.82538 -3.12870 1.46788 2.00451 2.50814 2.85406 3.09867 3.39517 3.44261 3.45590 4.13449 4.21348 4.48487 4.56720 4.65478 4.71892 5.09271 5.22402 5.43049 5.59549 5.68055 5.81888 6.02940 6.03210 6.11856 6.28564 6.31266 6.33782 6.42551 6.52020 6.55956 6.74448 6.86133 6.94502 7.48594 7.62347 7.92800 8.17534 8.34752 9.46075 10.00781 10.35493 11.39643 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.052553 B = 0.003388 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.670735 B = 8262.216265 C = 8462.358648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.718 5.718 5 C -0.242 4.242 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.930 5.930 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.138 3.862 14 H 0.085 0.915 15 C -0.153 4.153 16 N -0.714 5.714 17 C 0.497 3.503 18 O -0.512 6.512 19 C 0.110 3.890 20 N -0.368 5.368 21 C 0.253 3.747 22 N -0.547 5.547 23 C 0.190 3.810 24 N -0.287 5.287 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.386 0.614 29 H 0.257 0.743 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.398 0.602 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.219 0.781 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 6.983 -18.472 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.360 5.360 5 C -0.373 4.373 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.033 3.967 14 H 0.103 0.897 15 C -0.211 4.211 16 N -0.366 5.366 17 C 0.280 3.720 18 O -0.386 6.386 19 C -0.017 4.017 20 N -0.159 5.159 21 C -0.044 4.044 22 N -0.274 5.274 23 C -0.113 4.113 24 N -0.114 5.114 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.232 0.768 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.235 0.765 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.118 6.078 -18.277 19.929 hybrid contribution -0.192 0.791 1.161 1.418 sum -5.310 6.869 -17.115 19.192 Atomic orbital electron populations 1.22457 0.99086 1.01091 0.99804 1.20384 0.92094 0.95581 0.86099 0.93105 1.42286 1.78218 1.10702 1.04797 1.19133 1.37342 0.93805 0.87046 0.91184 1.24749 1.01934 0.95927 0.98064 1.69650 1.50568 1.08502 1.29073 0.86269 0.77763 0.78600 0.83519 1.21280 1.21676 1.21234 1.21374 0.94549 0.97524 0.83209 0.89729 1.22049 0.94764 1.01819 1.02461 1.46004 1.67108 1.13922 1.09593 1.20316 0.79404 0.87950 0.84368 1.90813 1.48238 1.15430 1.84083 1.21626 1.05639 0.90737 0.83709 1.49981 1.08211 1.32717 1.25010 1.26058 0.94742 0.94945 0.88658 1.70513 1.13752 1.16735 1.26357 1.26015 0.90500 0.99585 0.95216 1.78213 1.10507 1.09109 1.13536 0.92573 0.94664 0.93450 0.78025 0.93324 0.93401 0.93022 0.90042 0.76783 0.85228 0.86400 0.76506 0.76781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.33 37.16 0.35 -2.34 16 2 C 0.17 3.04 2.52 -67.93 -0.17 2.87 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -16.98 4.43 -53.43 -0.24 -17.22 16 5 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 6 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 8 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 9 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.14 2.22 2.21 -67.93 -0.15 2.07 16 14 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 15 C -0.15 -2.58 9.32 37.16 0.35 -2.24 16 16 N -0.71 -8.37 4.38 -53.81 -0.24 -8.60 16 17 C 0.50 6.27 7.83 -10.99 -0.09 6.18 16 18 O -0.51 -9.23 15.42 5.56 0.09 -9.15 16 19 C 0.11 0.84 7.03 -5.19 -0.04 0.81 16 20 N -0.37 -4.01 3.40 -63.82 -0.22 -4.23 16 21 C 0.25 2.35 12.63 -90.65 -1.14 1.21 16 22 N -0.55 -6.50 11.19 -15.83 -0.18 -6.68 16 23 C 0.19 2.29 13.03 -91.82 -1.20 1.09 16 24 N -0.29 -4.00 11.83 29.29 0.35 -3.66 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.44 7.45 -51.93 -0.39 0.05 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.39 9.93 7.59 -40.82 -0.31 9.62 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.59 7.45 -51.93 -0.39 1.20 16 33 H 0.40 3.28 8.39 -40.82 -0.34 2.94 16 34 H 0.13 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.22 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -36.21 321.49 -7.39 -43.60 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.16 Total: 8.38 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.34 Total: 2.72 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: 0.20 Total: -67.15 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.21 -7.39 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717437615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.944 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds