Wall clock time and date at job start Mon Mar 30 2020 00:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.08995 * 109.47843 * 300.00405 * 13 2 1 15 15 C 1.52998 * 109.47053 * 179.97438 * 13 2 1 16 16 N 1.46504 * 109.47143 * 60.00410 * 13 2 1 17 17 C 1.34774 * 120.00240 * 204.99720 * 16 13 2 18 18 O 1.21283 * 119.99643 * 359.97438 * 17 16 13 19 19 C 1.50694 * 119.99993 * 179.97438 * 17 16 13 20 20 N 1.46507 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.34430 * 126.82273 * 124.99748 * 20 19 17 22 22 N 1.30830 * 108.07355 * 179.97438 * 21 20 19 23 23 C 1.33240 * 109.83164 * 359.97438 * 22 21 20 24 24 N 1.30709 * 108.94498 * 359.75587 * 23 22 21 25 25 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 26 26 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 28 28 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 29 29 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47233 * 180.02562 * 15 13 2 31 31 H 1.09002 * 109.47294 * 299.99979 * 15 13 2 32 32 H 1.08998 * 109.47317 * 60.00192 * 15 13 2 33 33 H 0.97005 * 119.99919 * 24.99503 * 16 13 2 34 34 H 1.08998 * 109.47224 * 299.99698 * 19 17 16 35 35 H 1.08992 * 109.47529 * 60.00354 * 19 17 16 36 36 H 1.07998 * 125.96123 * 0.02562 * 21 20 19 37 37 H 1.08005 * 125.52478 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.4626 0.8103 5.5266 11 1 3.2862 -0.6517 6.1717 12 1 3.7440 1.3872 4.9407 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2493 15 6 3.5699 -0.7208 -1.2495 16 7 1.5517 -0.0307 -2.4454 17 6 1.4230 -0.7030 -3.6064 18 8 1.7119 -1.8797 -3.6609 19 6 0.9202 0.0072 -4.8367 20 7 0.8705 -0.9343 -5.9581 21 6 -0.1958 -1.2161 -6.7267 22 7 0.1683 -2.1040 -7.6160 23 6 1.4537 -2.4116 -7.4477 24 7 1.9290 -1.7166 -6.4478 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6319 1.1526 29 1 3.2330 -2.4001 4.2460 30 1 3.9333 -1.2343 -2.1397 31 1 3.9329 0.3070 -1.2498 32 1 3.9337 -1.2343 -0.3595 33 1 1.3210 0.9105 -2.4019 34 1 -0.0791 0.3990 -4.6471 35 1 1.5924 0.8295 -5.0818 36 1 -1.1807 -0.7842 -6.6280 37 1 2.0133 -3.1177 -8.0433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717437615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:19 Heat of formation + Delta-G solvation = 45.473411 kcal Electronic energy + Delta-G solvation = -20050.003461 eV Core-core repulsion = 16864.024064 eV Total energy + Delta-G solvation = -3185.979397 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.96413 -40.88056 -38.30790 -35.62075 -34.96396 -33.54946 -32.13468 -31.29734 -30.14302 -28.72898 -25.91328 -24.55283 -23.14762 -22.85612 -21.57997 -21.40009 -19.40151 -18.40550 -18.29718 -16.98209 -16.66974 -16.52465 -16.12763 -15.67244 -15.35165 -15.15315 -14.98054 -14.75035 -14.55979 -14.08450 -13.78269 -13.40264 -13.18662 -12.93424 -12.74840 -12.70139 -12.57767 -12.25945 -12.21105 -11.73527 -11.47701 -11.31004 -10.98575 -10.96761 -10.74209 -10.48367 -10.12672 -9.01537 -7.92003 -5.21176 0.72066 1.35457 1.49142 1.51587 1.56942 1.57563 2.04283 2.15476 2.59614 3.42383 3.54380 3.57116 3.74526 3.83021 4.03550 4.13003 4.17992 4.21625 4.34700 4.45775 4.59633 4.78395 4.87446 4.95635 5.05540 5.18235 5.27852 5.30111 5.48824 5.50703 5.53858 5.59226 5.91907 6.28698 6.56049 7.15330 7.26205 7.34837 8.09130 8.31229 9.31486 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.052553 B = 0.003388 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.670735 B = 8262.216265 C = 8462.358648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.066 0.934 4 N -0.733 5.733 5 C -0.233 4.233 6 H 0.083 0.917 7 C -0.078 4.078 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.277 1.277 11 H -0.302 1.302 12 H -0.276 1.276 13 C 0.154 3.846 14 H 0.052 0.948 15 C -0.143 4.143 16 N -0.697 5.697 17 C 0.494 3.506 18 O -0.573 6.573 19 C 0.114 3.886 20 N -0.377 5.377 21 C 0.264 3.736 22 N -0.578 5.578 23 C 0.182 3.818 24 N -0.339 5.339 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.028 0.972 28 H 0.370 0.630 29 H 0.249 0.751 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.421 0.579 34 H 0.188 0.812 35 H 0.148 0.852 36 H 0.270 0.730 37 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 10.077 -19.706 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.084 0.916 4 N -0.373 5.373 5 C -0.365 4.365 6 H 0.101 0.899 7 C -0.270 4.270 8 N -0.623 5.623 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.229 1.229 12 H -0.202 1.202 13 C 0.048 3.952 14 H 0.071 0.929 15 C -0.202 4.202 16 N -0.352 5.352 17 C 0.279 3.721 18 O -0.450 6.450 19 C -0.011 4.011 20 N -0.168 5.168 21 C -0.032 4.032 22 N -0.306 5.306 23 C -0.120 4.120 24 N -0.166 5.166 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.047 0.953 28 H 0.201 0.799 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.259 0.741 34 H 0.205 0.795 35 H 0.165 0.835 36 H 0.285 0.715 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.956 9.277 -19.549 22.729 hybrid contribution 0.317 -0.131 1.444 1.484 sum -6.639 9.146 -18.105 21.343 Atomic orbital electron populations 1.22304 0.97185 1.00419 1.01479 1.20596 0.93174 0.95666 0.84688 0.91628 1.42512 1.78536 1.10204 1.06090 1.19577 1.34799 0.94283 0.87801 0.89915 1.25551 1.03180 0.96748 1.01501 1.69827 1.52913 1.10249 1.29351 0.85241 0.77985 0.77257 0.79447 1.20354 1.22883 1.20219 1.20823 0.93714 0.96178 0.84468 0.92929 1.21919 0.95580 1.02161 1.00490 1.45694 1.66559 1.14776 1.08124 1.21245 0.77964 0.87348 0.85498 1.90807 1.50769 1.18410 1.85065 1.22003 1.09379 0.89680 0.80002 1.50151 1.07898 1.32973 1.25772 1.27053 0.95810 0.93317 0.86976 1.70518 1.13769 1.18275 1.28055 1.26455 0.91012 0.99569 0.94992 1.78117 1.12899 1.10842 1.14729 0.93924 0.89865 0.95315 0.79870 0.94235 0.93994 0.91376 0.93384 0.74101 0.79483 0.83490 0.71491 0.75144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.33 71.98 0.67 -4.00 16 2 C 0.17 5.78 2.52 44.99 0.11 5.89 16 3 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 4 N -0.73 -34.95 4.43 -322.96 -1.43 -36.38 16 5 C -0.23 -12.22 9.93 84.03 0.83 -11.39 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 8 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 9 Si 0.97 45.01 29.55 68.60 2.03 47.03 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 13 C 0.15 4.87 2.21 44.99 0.10 4.97 16 14 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 15 C -0.14 -4.88 9.32 71.98 0.67 -4.21 16 16 N -0.70 -14.30 4.38 -442.55 -1.94 -16.24 16 17 C 0.49 11.26 7.83 87.66 0.69 11.95 16 18 O -0.57 -20.60 15.42 -3.04 -0.05 -20.64 16 19 C 0.11 1.24 7.03 85.63 0.60 1.84 16 20 N -0.38 -7.16 3.40 -355.81 -1.21 -8.37 16 21 C 0.26 4.04 12.63 180.36 2.28 6.32 16 22 N -0.58 -12.87 11.19 -204.00 -2.28 -15.15 16 23 C 0.18 4.34 13.03 180.77 2.36 6.69 16 24 N -0.34 -9.23 11.83 -61.24 -0.72 -9.96 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.71 7.45 -2.39 -0.02 1.69 16 27 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.37 19.79 7.59 -92.70 -0.70 19.09 16 29 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 33 H 0.42 4.89 8.39 -92.70 -0.78 4.11 16 34 H 0.19 -0.14 8.09 -2.39 -0.02 -0.16 16 35 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.27 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.23 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -84.17 321.49 3.06 -81.10 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.39 Total: 23.41 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 8.78 Total: 14.18 kcal Atomic # 7 Polarization: -137.78 SS G_CDS: -7.30 Total: -145.08 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -84.17 3.06 -81.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717437615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.576 kcal (2) G-P(sol) polarization free energy of solvation -84.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds