Wall clock time and date at job start Mon Mar 30 2020 00:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46700 * 2 1 4 4 N 1.46497 * 109.47433 * 240.00276 * 2 1 3 5 5 C 1.36932 * 120.00102 * 84.99096 * 4 2 1 6 6 H 1.07992 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99614 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00307 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99528 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47478 * 60.00566 * 9 7 5 11 11 H 1.48507 * 109.46816 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47633 * 299.99900 * 9 7 5 13 13 C 1.52999 * 109.47304 * 119.99342 * 2 1 3 14 14 H 1.09000 * 109.47160 * 185.00177 * 13 2 1 15 15 C 1.53006 * 109.46626 * 65.00546 * 13 2 1 16 16 N 1.46492 * 109.47381 * 305.00396 * 13 2 1 17 17 C 1.34781 * 119.99920 * 204.99632 * 16 13 2 18 18 O 1.21274 * 119.99803 * 0.02562 * 17 16 13 19 19 C 1.50697 * 119.99747 * 180.02562 * 17 16 13 20 20 N 1.46507 * 109.47043 * 180.02562 * 19 17 16 21 21 C 1.34429 * 126.81950 * 124.99970 * 20 19 17 22 22 N 1.30841 * 108.07088 * 179.97438 * 21 20 19 23 23 C 1.33239 * 109.82901 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.94711 * 359.74958 * 23 22 21 25 25 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47430 * 299.99746 * 1 2 3 27 27 H 1.08998 * 109.47381 * 60.00756 * 1 2 3 28 28 H 0.97000 * 119.99812 * 264.99949 * 4 2 1 29 29 H 0.96996 * 120.00072 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47050 * 299.99699 * 15 13 2 31 31 H 1.09001 * 109.46801 * 59.99811 * 15 13 2 32 32 H 1.09001 * 109.46998 * 179.97438 * 15 13 2 33 33 H 0.96998 * 120.00176 * 25.00271 * 16 13 2 34 34 H 1.09006 * 109.47530 * 299.99941 * 19 17 16 35 35 H 1.08998 * 109.47252 * 60.00349 * 19 17 16 36 36 H 1.07993 * 125.96930 * 359.97438 * 21 20 19 37 37 H 1.08002 * 125.52286 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8925 1.0404 -2.4242 7 6 2.6114 -0.6620 -3.5092 8 7 2.9236 -1.9392 -3.4503 9 14 2.7903 0.2701 -5.1182 10 1 3.7462 1.3918 -4.9368 11 1 3.2981 -0.6487 -6.1686 12 1 1.4682 0.8078 -5.5285 13 6 2.0401 -0.7211 1.2493 14 1 3.1264 -0.6441 1.2952 15 6 1.6354 -2.1954 1.1880 16 7 1.4559 -0.1035 2.4423 17 6 2.0914 -0.1936 3.6276 18 8 3.1469 -0.7855 3.7062 19 6 1.4901 0.4412 4.8549 20 7 2.3657 0.2050 6.0056 21 6 2.8877 1.1341 6.8249 22 7 3.6118 0.5204 7.7254 23 6 3.5768 -0.7947 7.5141 24 7 2.8222 -1.0375 6.4748 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 2.2491 -1.6317 -1.1526 29 1 3.2470 -2.3964 -4.2423 30 1 0.5491 -2.2724 1.1421 31 1 2.0700 -2.6548 0.3003 32 1 1.9991 -2.7093 2.0778 33 1 0.6118 0.3702 2.3794 34 1 1.3837 1.5141 4.6941 35 1 0.5105 0.0038 5.0475 36 1 2.7359 2.2009 6.7526 37 1 4.0861 -1.5395 8.1077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717437617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:25 Heat of formation + Delta-G solvation = 75.747803 kcal Electronic energy + Delta-G solvation = -20053.806633 eV Core-core repulsion = 16869.140032 eV Total energy + Delta-G solvation = -3184.666601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19544 -39.81477 -37.06279 -34.16553 -34.01993 -31.92023 -31.31806 -29.75586 -28.27946 -27.90914 -24.49050 -23.48706 -22.28416 -22.12269 -20.55107 -19.33713 -17.78461 -17.54495 -17.20064 -15.93528 -15.61151 -15.18463 -14.82034 -14.65594 -14.30538 -14.16457 -13.87676 -13.46533 -13.13690 -12.81446 -12.46055 -12.07438 -11.92919 -11.70579 -11.37202 -10.99203 -10.86629 -10.56907 -10.35083 -10.33948 -10.16933 -10.06263 -9.89857 -9.77167 -9.54661 -9.00022 -8.93815 -7.06585 -5.83207 -3.13363 1.46945 2.00664 2.50684 2.85611 3.10578 3.39944 3.44614 3.45727 4.13729 4.21484 4.49449 4.55845 4.65387 4.72041 5.09403 5.27355 5.40064 5.55167 5.58101 5.75200 5.99084 6.03382 6.06964 6.21456 6.29361 6.32090 6.36724 6.53783 6.56237 6.63995 6.82293 7.00054 7.48257 7.62769 7.92977 8.17628 8.35042 9.46262 10.01063 10.35552 11.39223 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042039 B = 0.003408 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.889667 B = 8214.523534 C = 8270.742516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.719 5.719 5 C -0.245 4.245 6 H 0.071 0.929 7 C -0.010 4.010 8 N -0.931 5.931 9 Si 0.909 3.091 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.138 3.862 14 H 0.088 0.912 15 C -0.159 4.159 16 N -0.716 5.716 17 C 0.496 3.504 18 O -0.511 6.511 19 C 0.109 3.891 20 N -0.368 5.368 21 C 0.253 3.747 22 N -0.547 5.547 23 C 0.190 3.810 24 N -0.287 5.287 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.387 0.613 29 H 0.257 0.743 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.398 0.602 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.219 0.781 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 6.593 18.425 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.376 4.376 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.034 3.966 14 H 0.106 0.894 15 C -0.218 4.218 16 N -0.370 5.370 17 C 0.278 3.722 18 O -0.385 6.385 19 C -0.017 4.017 20 N -0.159 5.159 21 C -0.044 4.044 22 N -0.274 5.274 23 C -0.113 4.113 24 N -0.114 5.114 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.223 0.777 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.234 0.766 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.235 0.765 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.643 5.698 18.230 19.916 hybrid contribution -0.389 0.624 -1.160 1.373 sum -6.032 6.321 17.070 19.177 Atomic orbital electron populations 1.22548 0.99294 1.01316 0.99722 1.20355 0.92201 0.95547 0.86128 0.93068 1.42445 1.78239 1.10807 1.04792 1.19168 1.37310 0.93934 0.87144 0.91153 1.24754 1.01797 0.95981 0.98143 1.69641 1.50392 1.08660 1.29178 0.86254 0.77778 0.78625 0.83409 1.21211 1.21650 1.21245 1.21365 0.98993 0.92960 0.83325 0.89433 1.22139 1.01519 0.95697 1.02408 1.46179 1.25793 1.56894 1.08144 1.20350 0.85831 0.81508 0.84468 1.90811 1.21833 1.41139 1.84750 1.21632 0.93589 1.03588 0.82922 1.49980 1.37841 1.05029 1.23066 1.26063 0.92638 0.97922 0.87780 1.70518 1.23434 1.06308 1.27096 1.26014 0.97731 0.92990 0.94579 1.78211 1.17324 1.02086 1.13753 0.92767 0.94914 0.92321 0.77744 0.93303 0.92473 0.90438 0.93055 0.76576 0.85210 0.86404 0.76494 0.76780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.01 37.16 0.33 -2.27 16 2 C 0.17 3.06 2.93 -67.93 -0.20 2.86 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.72 -17.17 5.03 -53.43 -0.27 -17.44 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 8 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 9 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.14 2.25 2.62 -67.93 -0.18 2.07 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 15 C -0.16 -2.63 9.00 37.16 0.33 -2.30 16 16 N -0.72 -8.55 4.99 -53.81 -0.27 -8.82 16 17 C 0.50 6.34 7.83 -10.98 -0.09 6.25 16 18 O -0.51 -9.31 15.41 5.56 0.09 -9.22 16 19 C 0.11 0.85 7.03 -5.19 -0.04 0.82 16 20 N -0.37 -4.03 3.40 -63.81 -0.22 -4.25 16 21 C 0.25 2.36 12.63 -90.65 -1.14 1.22 16 22 N -0.55 -6.53 11.19 -15.83 -0.18 -6.70 16 23 C 0.19 2.29 13.03 -91.82 -1.20 1.10 16 24 N -0.29 -4.02 11.83 29.29 0.35 -3.67 16 25 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 26 H 0.03 0.37 6.29 -51.93 -0.33 0.04 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.39 9.83 5.77 -40.82 -0.24 9.60 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 31 H 0.08 1.45 6.29 -51.93 -0.33 1.12 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.40 3.45 6.58 -40.82 -0.27 3.18 16 34 H 0.13 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.22 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -36.49 313.78 -7.22 -43.71 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.73 Total: 8.98 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.42 Total: 2.66 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: 0.14 Total: -67.76 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.49 -7.22 -43.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717437617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.459 kcal (2) G-P(sol) polarization free energy of solvation -36.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds