Wall clock time and date at job start Mon Mar 30 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46700 * 2 1 4 4 N 1.46497 * 109.47433 * 240.00276 * 2 1 3 5 5 C 1.36932 * 120.00102 * 84.99096 * 4 2 1 6 6 H 1.07992 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99614 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00307 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99528 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47478 * 60.00566 * 9 7 5 11 11 H 1.48507 * 109.46816 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47633 * 299.99900 * 9 7 5 13 13 C 1.52999 * 109.47304 * 119.99342 * 2 1 3 14 14 H 1.09000 * 109.47160 * 185.00177 * 13 2 1 15 15 C 1.53006 * 109.46626 * 65.00546 * 13 2 1 16 16 N 1.46492 * 109.47381 * 305.00396 * 13 2 1 17 17 C 1.34781 * 119.99920 * 204.99632 * 16 13 2 18 18 O 1.21274 * 119.99803 * 0.02562 * 17 16 13 19 19 C 1.50697 * 119.99747 * 180.02562 * 17 16 13 20 20 N 1.46507 * 109.47043 * 180.02562 * 19 17 16 21 21 C 1.34429 * 126.81950 * 124.99970 * 20 19 17 22 22 N 1.30841 * 108.07088 * 179.97438 * 21 20 19 23 23 C 1.33239 * 109.82901 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.94711 * 359.74958 * 23 22 21 25 25 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47430 * 299.99746 * 1 2 3 27 27 H 1.08998 * 109.47381 * 60.00756 * 1 2 3 28 28 H 0.97000 * 119.99812 * 264.99949 * 4 2 1 29 29 H 0.96996 * 120.00072 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47050 * 299.99699 * 15 13 2 31 31 H 1.09001 * 109.46801 * 59.99811 * 15 13 2 32 32 H 1.09001 * 109.46998 * 179.97438 * 15 13 2 33 33 H 0.96998 * 120.00176 * 25.00271 * 16 13 2 34 34 H 1.09006 * 109.47530 * 299.99941 * 19 17 16 35 35 H 1.08998 * 109.47252 * 60.00349 * 19 17 16 36 36 H 1.07993 * 125.96930 * 359.97438 * 21 20 19 37 37 H 1.08002 * 125.52286 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8925 1.0404 -2.4242 7 6 2.6114 -0.6620 -3.5092 8 7 2.9236 -1.9392 -3.4503 9 14 2.7903 0.2701 -5.1182 10 1 3.7462 1.3918 -4.9368 11 1 3.2981 -0.6487 -6.1686 12 1 1.4682 0.8078 -5.5285 13 6 2.0401 -0.7211 1.2493 14 1 3.1264 -0.6441 1.2952 15 6 1.6354 -2.1954 1.1880 16 7 1.4559 -0.1035 2.4423 17 6 2.0914 -0.1936 3.6276 18 8 3.1469 -0.7855 3.7062 19 6 1.4901 0.4412 4.8549 20 7 2.3657 0.2050 6.0056 21 6 2.8877 1.1341 6.8249 22 7 3.6118 0.5204 7.7254 23 6 3.5768 -0.7947 7.5141 24 7 2.8222 -1.0375 6.4748 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 2.2491 -1.6317 -1.1526 29 1 3.2470 -2.3964 -4.2423 30 1 0.5491 -2.2724 1.1421 31 1 2.0700 -2.6548 0.3003 32 1 1.9991 -2.7093 2.0778 33 1 0.6118 0.3702 2.3794 34 1 1.3837 1.5141 4.6941 35 1 0.5105 0.0038 5.0475 36 1 2.7359 2.2009 6.7526 37 1 4.0861 -1.5395 8.1077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717437617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:24 Heat of formation + Delta-G solvation = 49.251272 kcal Electronic energy + Delta-G solvation = -20054.955608 eV Core-core repulsion = 16869.140032 eV Total energy + Delta-G solvation = -3185.815577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.96866 -40.93373 -38.47414 -35.62784 -34.97170 -33.57560 -32.13678 -31.24221 -29.81618 -28.78073 -26.16538 -25.02039 -23.27635 -22.86346 -21.59434 -20.70058 -19.49586 -18.46479 -18.29540 -16.84873 -16.70409 -16.61099 -16.14026 -15.84093 -15.60991 -15.33219 -15.00476 -14.74713 -14.49105 -14.03570 -13.74386 -13.39121 -13.11256 -13.00473 -12.78409 -12.74558 -12.62420 -12.19184 -12.02448 -11.66770 -11.60706 -11.31661 -10.99102 -10.94329 -10.74559 -10.49207 -10.13521 -9.03766 -7.94138 -5.23135 0.71543 1.34860 1.48020 1.50733 1.55181 1.56676 2.03932 2.15004 2.58058 3.39901 3.53716 3.56787 3.75557 3.89530 3.98639 4.06845 4.12281 4.19184 4.31357 4.44856 4.60647 4.68801 4.87282 4.97444 5.01205 5.19887 5.26378 5.27607 5.47354 5.50083 5.54717 5.66123 5.91265 6.27897 6.53753 7.14832 7.24208 7.34276 8.09687 8.31154 9.29403 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042039 B = 0.003408 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.889667 B = 8214.523534 C = 8270.742516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.051 0.949 4 N -0.737 5.737 5 C -0.239 4.239 6 H 0.080 0.920 7 C -0.077 4.077 8 N -0.972 5.972 9 Si 0.972 3.028 10 H -0.279 1.279 11 H -0.300 1.300 12 H -0.275 1.275 13 C 0.153 3.847 14 H 0.050 0.950 15 C -0.149 4.149 16 N -0.699 5.699 17 C 0.492 3.508 18 O -0.573 6.573 19 C 0.114 3.886 20 N -0.377 5.377 21 C 0.264 3.736 22 N -0.578 5.578 23 C 0.183 3.817 24 N -0.339 5.339 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.375 0.625 29 H 0.250 0.750 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.419 0.581 34 H 0.188 0.812 35 H 0.149 0.851 36 H 0.270 0.730 37 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 9.331 19.641 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.379 5.379 5 C -0.371 4.371 6 H 0.098 0.902 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.802 3.198 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.201 1.201 13 C 0.047 3.953 14 H 0.069 0.931 15 C -0.208 4.208 16 N -0.355 5.355 17 C 0.278 3.722 18 O -0.450 6.450 19 C -0.011 4.011 20 N -0.168 5.168 21 C -0.032 4.032 22 N -0.306 5.306 23 C -0.120 4.120 24 N -0.166 5.166 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.259 0.741 34 H 0.205 0.795 35 H 0.166 0.834 36 H 0.285 0.715 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.803 8.505 19.483 22.645 hybrid contribution 0.246 -0.160 -1.436 1.465 sum -7.557 8.345 18.047 21.271 Atomic orbital electron populations 1.22369 0.96258 1.01600 1.01554 1.20560 0.94088 0.94902 0.84760 0.93106 1.42690 1.78714 1.10531 1.05975 1.19603 1.35055 0.94360 0.88065 0.90184 1.25561 1.02936 0.96848 1.01569 1.69811 1.52573 1.10318 1.29517 0.85226 0.78042 0.77222 0.79349 1.20538 1.22636 1.20086 1.20812 0.97064 0.92878 0.84530 0.93139 1.22018 1.02402 0.95709 1.00634 1.45859 1.26345 1.56506 1.06754 1.21297 0.84901 0.80388 0.85632 1.90803 1.24719 1.43815 1.85698 1.22008 0.93327 1.06632 0.79106 1.50148 1.38381 1.04380 1.23895 1.27059 0.90420 0.99529 0.86161 1.70524 1.24957 1.06349 1.28770 1.26459 0.97390 0.93809 0.94358 1.78115 1.18935 1.04616 1.14901 0.93266 0.89668 0.93902 0.79149 0.94118 0.90535 0.93346 0.93680 0.74094 0.79511 0.83388 0.71488 0.75116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 9.01 71.98 0.65 -3.78 16 2 C 0.17 5.83 2.93 44.99 0.13 5.96 16 3 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 4 N -0.74 -35.55 5.03 -322.94 -1.63 -37.18 16 5 C -0.24 -12.80 9.93 84.04 0.83 -11.97 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 7 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 8 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 9 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.15 4.92 2.62 44.99 0.12 5.04 16 14 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 15 C -0.15 -4.98 9.00 71.98 0.65 -4.33 16 16 N -0.70 -14.78 4.99 -442.55 -2.21 -16.99 16 17 C 0.49 11.48 7.83 87.66 0.69 12.17 16 18 O -0.57 -20.87 15.41 -3.01 -0.05 -20.92 16 19 C 0.11 1.28 7.03 85.63 0.60 1.88 16 20 N -0.38 -7.24 3.40 -355.79 -1.21 -8.45 16 21 C 0.26 4.09 12.63 180.36 2.28 6.37 16 22 N -0.58 -12.93 11.19 -204.00 -2.28 -15.21 16 23 C 0.18 4.35 13.03 180.77 2.36 6.71 16 24 N -0.34 -9.26 11.83 -61.25 -0.72 -9.99 16 25 H 0.05 1.44 6.56 -2.38 -0.02 1.43 16 26 H 0.08 1.47 6.29 -2.39 -0.02 1.46 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.37 19.74 5.77 -92.71 -0.54 19.21 16 29 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.08 2.21 6.56 -2.39 -0.02 2.20 16 31 H 0.05 1.90 6.29 -2.39 -0.02 1.88 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.42 5.23 6.58 -92.71 -0.61 4.62 16 34 H 0.19 -0.06 8.09 -2.38 -0.02 -0.08 16 35 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.27 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.23 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -84.95 313.78 2.94 -82.01 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.04 Total: 24.13 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 8.77 Total: 14.16 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -7.77 Total: -146.81 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.92 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -84.95 2.94 -82.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717437617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.261 kcal (2) G-P(sol) polarization free energy of solvation -84.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds