Wall clock time and date at job start Mon Mar 30 2020 00:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.36940 * 120.00276 * 274.99870 * 4 2 1 6 6 H 1.08002 * 119.99359 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00221 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00226 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47360 * 89.99777 * 9 7 5 11 11 H 1.48498 * 109.47518 * 209.99876 * 9 7 5 12 12 H 1.48507 * 109.46892 * 329.99954 * 9 7 5 13 13 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 14 14 H 1.09001 * 109.46992 * 174.99449 * 13 2 1 15 15 C 1.52996 * 109.47276 * 294.99872 * 13 2 1 16 16 N 1.46510 * 109.47089 * 54.99980 * 13 2 1 17 17 C 1.34774 * 119.99669 * 154.99962 * 16 13 2 18 18 O 1.21277 * 120.00249 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99604 * 180.02562 * 17 16 13 20 20 N 1.46499 * 109.47046 * 179.97438 * 19 17 16 21 21 C 1.34427 * 126.82524 * 124.99643 * 20 19 17 22 22 N 1.30831 * 108.07866 * 179.97438 * 21 20 19 23 23 C 1.33238 * 109.82782 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.94562 * 359.75255 * 23 22 21 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 29 29 H 0.97001 * 120.00480 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47120 * 180.02562 * 15 13 2 31 31 H 1.08998 * 109.47375 * 300.00219 * 15 13 2 32 32 H 1.09000 * 109.46912 * 60.00396 * 15 13 2 33 33 H 0.96996 * 119.99772 * 335.00277 * 16 13 2 34 34 H 1.08999 * 109.47188 * 299.99543 * 19 17 16 35 35 H 1.08996 * 109.47321 * 59.99804 * 19 17 16 36 36 H 1.07999 * 125.96141 * 0.02562 * 21 20 19 37 37 H 1.08006 * 125.52203 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3758 6 1 1.8919 1.0402 2.4243 7 6 2.6123 -0.6619 3.5089 8 7 2.7376 -0.0055 4.6429 9 14 3.0579 -2.4739 3.4247 10 1 4.4907 -2.6150 3.0608 11 1 2.8189 -3.1046 4.7477 12 1 2.2183 -3.1429 2.3985 13 6 2.0401 -0.7212 -1.2492 14 1 3.1264 -0.6441 -1.2952 15 6 1.6354 -2.1954 -1.1881 16 7 1.4559 -0.1035 -2.4424 17 6 2.0913 -0.1936 -3.6275 18 8 3.1469 -0.7855 -3.7062 19 6 1.4907 0.4423 -4.8548 20 7 2.3661 0.2059 -6.0054 21 6 2.0236 -0.3604 -7.1755 22 7 3.0857 -0.3894 -7.9388 23 6 4.1209 0.1464 -7.2934 24 7 3.7287 0.5302 -6.1071 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 3.0616 -0.4626 5.4347 30 1 1.9991 -2.7092 -2.0779 31 1 2.0699 -2.6549 -0.3004 32 1 0.5490 -2.2723 -1.1422 33 1 0.6119 0.3703 -2.3794 34 1 0.5108 0.0057 -5.0476 35 1 1.3851 1.5151 -4.6934 36 1 1.0425 -0.7266 -7.4397 37 1 5.1209 0.2502 -7.6880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717437618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:27 Heat of formation + Delta-G solvation = 80.060749 kcal Electronic energy + Delta-G solvation = -20127.330421 eV Core-core repulsion = 16942.850843 eV Total energy + Delta-G solvation = -3184.479577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24265 -39.92204 -37.24450 -34.22395 -34.14824 -31.98218 -31.36347 -30.10435 -28.71250 -28.01238 -24.60756 -23.31970 -22.23358 -22.16565 -20.60154 -19.45507 -18.21284 -17.60660 -17.34088 -16.03357 -15.72515 -15.17594 -14.97710 -14.73293 -14.38737 -14.20903 -13.95548 -13.65924 -13.18794 -12.80028 -12.65466 -12.24560 -12.01375 -11.87682 -11.62216 -11.19900 -10.95777 -10.69328 -10.43924 -10.43055 -10.20895 -10.11125 -9.94071 -9.70609 -9.60465 -9.07734 -9.01712 -7.38318 -5.83950 -3.21099 1.42425 1.95436 2.41894 2.81343 3.01561 3.32346 3.36127 3.41745 4.08766 4.15386 4.42733 4.52870 4.61590 4.67171 5.04492 5.10474 5.19031 5.31166 5.49207 5.53645 5.80293 5.90479 5.99057 6.03071 6.15323 6.19520 6.25242 6.35608 6.48286 6.53079 6.63711 6.88392 7.37996 7.88613 7.90357 8.08293 8.34416 9.11743 9.84057 10.02134 11.34015 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038532 B = 0.003708 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.485207 B = 7549.232318 C = 7749.256865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.743 5.743 5 C -0.247 4.247 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.135 3.865 14 H 0.090 0.910 15 C -0.161 4.161 16 N -0.715 5.715 17 C 0.497 3.503 18 O -0.512 6.512 19 C 0.110 3.890 20 N -0.368 5.368 21 C 0.252 3.748 22 N -0.546 5.546 23 C 0.190 3.810 24 N -0.286 5.286 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.363 0.637 29 H 0.261 0.739 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.400 0.600 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.219 0.781 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 0.246 -21.996 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.388 5.388 5 C -0.377 4.377 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.579 5.579 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.203 1.203 13 C 0.030 3.970 14 H 0.108 0.892 15 C -0.220 4.220 16 N -0.370 5.370 17 C 0.280 3.720 18 O -0.385 6.385 19 C -0.017 4.017 20 N -0.160 5.160 21 C -0.045 4.045 22 N -0.273 5.273 23 C -0.113 4.113 24 N -0.113 5.113 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.198 0.802 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.236 0.764 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.235 0.765 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.040 0.216 -21.576 22.407 hybrid contribution -0.407 -1.161 0.277 1.261 sum -6.447 -0.945 -21.299 22.273 Atomic orbital electron populations 1.22513 0.98778 1.01286 1.00330 1.20326 0.92376 0.95920 0.85074 0.92044 1.42792 1.79887 1.09450 1.06674 1.19035 1.37518 0.95626 0.85519 0.89079 1.24651 1.01113 0.97514 0.95532 1.69692 1.52209 1.35648 1.00301 0.86616 0.78676 0.86666 0.76924 1.20876 1.21581 1.20324 1.21373 0.99292 0.92648 0.83702 0.89173 1.22166 1.01801 0.95948 1.02037 1.46118 1.25881 1.56951 1.08026 1.20368 0.85737 0.81328 0.84599 1.90810 1.21425 1.41372 1.84932 1.21620 0.92542 1.03999 0.83539 1.49982 1.08057 1.45404 1.12533 1.26055 1.00394 0.95308 0.82703 1.70517 0.98851 1.24649 1.33306 1.26026 0.99848 0.96652 0.88744 1.78233 0.89643 1.23476 1.19927 0.92907 0.91791 0.94551 0.80223 0.92933 0.92855 0.91293 0.92086 0.76397 0.85207 0.86247 0.76516 0.76748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.01 37.16 0.33 -2.14 16 2 C 0.17 3.01 2.93 -67.93 -0.20 2.81 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.74 -16.67 4.84 -53.43 -0.26 -16.93 16 5 C -0.25 -6.73 10.41 -15.06 -0.16 -6.88 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 8 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 9 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 13 C 0.13 2.04 2.62 -67.93 -0.18 1.86 16 14 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 15 C -0.16 -2.38 9.00 37.16 0.33 -2.04 16 16 N -0.72 -7.93 4.99 -53.80 -0.27 -8.20 16 17 C 0.50 5.97 7.83 -10.98 -0.09 5.88 16 18 O -0.51 -8.87 15.41 5.56 0.09 -8.79 16 19 C 0.11 0.79 7.03 -5.19 -0.04 0.75 16 20 N -0.37 -3.86 3.40 -63.81 -0.22 -4.08 16 21 C 0.25 2.23 12.63 -90.66 -1.14 1.08 16 22 N -0.55 -6.29 11.19 -15.83 -0.18 -6.46 16 23 C 0.19 2.24 13.03 -91.82 -1.20 1.04 16 24 N -0.29 -3.92 11.83 29.29 0.35 -3.57 16 25 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.38 6.29 -51.93 -0.33 0.05 16 28 H 0.36 8.08 3.63 -40.82 -0.15 7.94 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.13 6.29 -51.93 -0.33 0.80 16 32 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.40 3.14 6.58 -40.82 -0.27 2.87 16 34 H 0.13 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.22 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -37.50 310.66 -6.86 -44.36 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.69 Total: 7.42 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.42 Total: 2.50 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.20 Total: -67.22 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -37.50 -6.86 -44.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717437618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.417 kcal (2) G-P(sol) polarization free energy of solvation -37.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds