Wall clock time and date at job start Mon Mar 30 2020 00:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.36940 * 120.00276 * 274.99870 * 4 2 1 6 6 H 1.08002 * 119.99359 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00221 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00226 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47360 * 89.99777 * 9 7 5 11 11 H 1.48498 * 109.47518 * 209.99876 * 9 7 5 12 12 H 1.48507 * 109.46892 * 329.99954 * 9 7 5 13 13 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 14 14 H 1.09001 * 109.46992 * 174.99449 * 13 2 1 15 15 C 1.52996 * 109.47276 * 294.99872 * 13 2 1 16 16 N 1.46510 * 109.47089 * 54.99980 * 13 2 1 17 17 C 1.34774 * 119.99669 * 154.99962 * 16 13 2 18 18 O 1.21277 * 120.00249 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99604 * 180.02562 * 17 16 13 20 20 N 1.46499 * 109.47046 * 179.97438 * 19 17 16 21 21 C 1.34427 * 126.82524 * 124.99643 * 20 19 17 22 22 N 1.30831 * 108.07866 * 179.97438 * 21 20 19 23 23 C 1.33238 * 109.82782 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.94562 * 359.75255 * 23 22 21 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 29 29 H 0.97001 * 120.00480 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47120 * 180.02562 * 15 13 2 31 31 H 1.08998 * 109.47375 * 300.00219 * 15 13 2 32 32 H 1.09000 * 109.46912 * 60.00396 * 15 13 2 33 33 H 0.96996 * 119.99772 * 335.00277 * 16 13 2 34 34 H 1.08999 * 109.47188 * 299.99543 * 19 17 16 35 35 H 1.08996 * 109.47321 * 59.99804 * 19 17 16 36 36 H 1.07999 * 125.96141 * 0.02562 * 21 20 19 37 37 H 1.08006 * 125.52203 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3758 6 1 1.8919 1.0402 2.4243 7 6 2.6123 -0.6619 3.5089 8 7 2.7376 -0.0055 4.6429 9 14 3.0579 -2.4739 3.4247 10 1 4.4907 -2.6150 3.0608 11 1 2.8189 -3.1046 4.7477 12 1 2.2183 -3.1429 2.3985 13 6 2.0401 -0.7212 -1.2492 14 1 3.1264 -0.6441 -1.2952 15 6 1.6354 -2.1954 -1.1881 16 7 1.4559 -0.1035 -2.4424 17 6 2.0913 -0.1936 -3.6275 18 8 3.1469 -0.7855 -3.7062 19 6 1.4907 0.4423 -4.8548 20 7 2.3661 0.2059 -6.0054 21 6 2.0236 -0.3604 -7.1755 22 7 3.0857 -0.3894 -7.9388 23 6 4.1209 0.1464 -7.2934 24 7 3.7287 0.5302 -6.1071 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 3.0616 -0.4626 5.4347 30 1 1.9991 -2.7092 -2.0779 31 1 2.0699 -2.6549 -0.3004 32 1 0.5490 -2.2723 -1.1422 33 1 0.6119 0.3703 -2.3794 34 1 0.5108 0.0057 -5.0476 35 1 1.3851 1.5151 -4.6934 36 1 1.0425 -0.7266 -7.4397 37 1 5.1209 0.2502 -7.6880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717437618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:27 Heat of formation + Delta-G solvation = 52.187397 kcal Electronic energy + Delta-G solvation = -20128.539100 eV Core-core repulsion = 16942.850843 eV Total energy + Delta-G solvation = -3185.688257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.97386 -40.96257 -38.59772 -35.70361 -34.97693 -33.73785 -32.14636 -31.58709 -30.09913 -28.79547 -26.10631 -24.84104 -23.24833 -22.86134 -21.60585 -20.81190 -20.00671 -18.46343 -18.29735 -16.97147 -16.83080 -16.55413 -15.98375 -15.87318 -15.69320 -15.51162 -15.07426 -14.73256 -14.53877 -14.12173 -13.84791 -13.57312 -13.24425 -13.13798 -12.89947 -12.73615 -12.67494 -12.18923 -11.95707 -11.80394 -11.62565 -11.32721 -11.02307 -10.99029 -10.75339 -10.51162 -10.15003 -9.36495 -8.04349 -5.37875 0.71548 1.33983 1.34742 1.38527 1.44536 1.53781 2.03377 2.14149 2.45787 3.27588 3.49991 3.56243 3.66346 3.73341 3.84430 4.01599 4.11481 4.19633 4.25977 4.44707 4.56732 4.62867 4.83234 4.93068 4.97038 5.13808 5.23646 5.27250 5.44410 5.49605 5.62623 5.76338 5.91514 6.19657 6.51969 7.05563 7.14547 7.22407 7.81445 7.98336 9.17022 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038532 B = 0.003708 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.485207 B = 7549.232318 C = 7749.256865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 H 0.047 0.953 4 N -0.750 5.750 5 C -0.226 4.226 6 H 0.062 0.938 7 C -0.061 4.061 8 N -0.983 5.983 9 Si 0.945 3.055 10 H -0.285 1.285 11 H -0.294 1.294 12 H -0.249 1.249 13 C 0.148 3.852 14 H 0.054 0.946 15 C -0.154 4.154 16 N -0.700 5.700 17 C 0.494 3.506 18 O -0.571 6.571 19 C 0.113 3.887 20 N -0.377 5.377 21 C 0.265 3.735 22 N -0.578 5.578 23 C 0.183 3.817 24 N -0.341 5.341 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.366 0.634 29 H 0.257 0.743 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.420 0.580 34 H 0.191 0.809 35 H 0.145 0.855 36 H 0.271 0.729 37 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -0.655 -24.609 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 H 0.065 0.935 4 N -0.395 5.395 5 C -0.357 4.357 6 H 0.080 0.920 7 C -0.253 4.253 8 N -0.633 5.633 9 Si 0.772 3.228 10 H -0.211 1.211 11 H -0.221 1.221 12 H -0.173 1.173 13 C 0.042 3.958 14 H 0.072 0.928 15 C -0.213 4.213 16 N -0.355 5.355 17 C 0.279 3.721 18 O -0.449 6.449 19 C -0.012 4.012 20 N -0.168 5.168 21 C -0.031 4.031 22 N -0.306 5.306 23 C -0.120 4.120 24 N -0.168 5.168 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.201 0.799 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.208 0.792 35 H 0.163 0.837 36 H 0.286 0.714 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.728 -0.659 -24.252 25.783 hybrid contribution 0.363 -0.771 1.001 1.315 sum -8.365 -1.431 -23.251 24.751 Atomic orbital electron populations 1.22348 0.95663 1.02214 1.01637 1.20536 0.94403 0.94901 0.84227 0.93495 1.42830 1.80318 1.09611 1.06781 1.19016 1.35014 0.94570 0.87143 0.92039 1.25418 1.02399 1.02173 0.95318 1.69863 1.54653 1.37625 1.01192 0.85572 0.78471 0.81453 0.77282 1.21130 1.22064 1.17310 1.20867 0.97423 0.93241 0.84298 0.92758 1.22098 1.03082 0.94984 1.01099 1.45840 1.26382 1.56614 1.06698 1.21254 0.84846 0.80207 0.85752 1.90801 1.24131 1.44056 1.85869 1.22010 0.93564 1.05449 0.80149 1.50144 1.07282 1.45578 1.13791 1.27067 1.01491 0.92984 0.81524 1.70522 0.99674 1.25859 1.34545 1.26445 1.00879 0.96164 0.88480 1.78134 0.92116 1.25442 1.21063 0.92114 0.94329 0.89487 0.79947 0.93363 0.92850 0.93187 0.89767 0.74048 0.79243 0.83743 0.71379 0.75211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 9.01 71.98 0.65 -3.52 16 2 C 0.17 5.62 2.93 44.99 0.13 5.75 16 3 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 4 N -0.75 -33.32 4.84 -322.95 -1.56 -34.89 16 5 C -0.23 -12.54 10.41 84.03 0.87 -11.66 16 6 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 7 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 8 N -0.98 -62.61 13.97 21.65 0.30 -62.30 16 9 Si 0.94 45.30 27.74 68.60 1.90 47.20 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 11 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 12 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 13 C 0.15 4.26 2.62 44.99 0.12 4.38 16 14 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 15 C -0.15 -4.19 9.00 71.98 0.65 -3.55 16 16 N -0.70 -13.26 4.99 -442.53 -2.21 -15.47 16 17 C 0.49 10.54 7.83 87.66 0.69 11.23 16 18 O -0.57 -19.44 15.41 -3.02 -0.05 -19.49 16 19 C 0.11 1.12 7.03 85.63 0.60 1.72 16 20 N -0.38 -6.80 3.40 -355.81 -1.21 -8.01 16 21 C 0.26 3.75 12.63 180.36 2.28 6.02 16 22 N -0.58 -12.31 11.19 -204.01 -2.28 -14.60 16 23 C 0.18 4.23 13.03 180.77 2.36 6.58 16 24 N -0.34 -9.09 11.83 -61.25 -0.72 -9.82 16 25 H 0.06 1.52 6.56 -2.39 -0.02 1.51 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.38 6.29 -2.39 -0.02 1.37 16 28 H 0.37 15.86 3.63 -92.71 -0.34 15.53 16 29 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.05 1.55 6.29 -2.39 -0.02 1.53 16 32 H 0.08 1.88 6.56 -2.39 -0.02 1.86 16 33 H 0.42 4.50 6.58 -92.71 -0.61 3.89 16 34 H 0.19 -0.42 8.09 -2.39 -0.02 -0.44 16 35 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.27 0.37 8.06 -2.91 -0.02 0.34 16 37 H 0.23 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -87.95 310.66 3.08 -84.88 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.10 Total: 18.66 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 8.81 Total: 13.83 kcal Atomic # 7 Polarization: -137.40 SS G_CDS: -7.68 Total: -145.08 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -87.95 3.08 -84.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717437618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.063 kcal (2) G-P(sol) polarization free energy of solvation -87.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds