Wall clock time and date at job start Mon Mar 30 2020 00:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47355 * 2 1 4 4 C 1.52999 * 109.47351 * 239.99651 * 2 1 3 5 5 N 1.46498 * 109.47070 * 185.00321 * 4 2 1 6 6 C 1.46506 * 120.00239 * 90.00054 * 5 4 2 7 7 C 1.34777 * 119.99828 * 269.71859 * 5 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 5 4 9 9 C 1.50699 * 119.99772 * 180.27730 * 7 5 4 10 10 N 1.46506 * 109.46888 * 180.02562 * 9 7 5 11 11 C 1.34426 * 126.82426 * 125.00020 * 10 9 7 12 12 N 1.30829 * 108.08067 * 179.97438 * 11 10 9 13 13 C 1.33243 * 109.82449 * 359.97438 * 12 11 10 14 14 N 1.30708 * 108.94615 * 359.75242 * 13 12 11 15 15 N 1.46500 * 109.47016 * 119.99251 * 2 1 3 16 16 C 1.36933 * 120.00493 * 275.00168 * 15 2 1 17 17 H 1.07998 * 119.99815 * 359.97438 * 16 15 2 18 18 C 1.38809 * 120.00375 * 179.97438 * 16 15 2 19 19 N 1.31619 * 120.00022 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00384 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47047 * 59.99839 * 20 18 16 22 22 H 1.48498 * 109.47775 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47242 * 300.00243 * 20 18 16 24 24 H 1.09000 * 109.47159 * 300.00652 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00310 * 1 2 3 26 26 H 1.08994 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47367 * 64.99648 * 4 2 1 28 28 H 1.09001 * 109.46864 * 304.99822 * 4 2 1 29 29 H 1.08999 * 109.46892 * 269.72399 * 6 5 4 30 30 H 1.09000 * 109.46803 * 29.71572 * 6 5 4 31 31 H 1.09000 * 109.47214 * 149.72366 * 6 5 4 32 32 H 1.08999 * 109.47685 * 300.00183 * 9 7 5 33 33 H 1.08997 * 109.47517 * 60.00530 * 9 7 5 34 34 H 1.08004 * 125.96052 * 359.97438 * 11 10 9 35 35 H 1.08001 * 125.52155 * 179.97438 * 13 12 11 36 36 H 0.97003 * 119.99999 * 95.00011 * 15 2 1 37 37 H 0.96997 * 120.00281 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1904 6 6 4.1258 -1.9920 -0.5609 7 6 4.2676 0.1464 -1.7205 8 8 3.7496 1.1113 -2.2416 9 6 5.7695 0.0352 -1.6655 10 7 6.3697 1.2095 -2.3035 11 6 7.2656 2.0518 -1.7604 12 7 7.5525 2.9678 -2.6494 13 6 6.8631 2.7441 -3.7674 14 7 6.1286 1.6750 -3.6064 15 7 2.0183 -0.6905 1.1963 16 6 2.1490 -0.0073 2.3758 17 1 1.8926 1.0407 2.4241 18 6 2.6112 -0.6617 3.5094 19 7 2.9243 -1.9387 3.4504 20 14 2.7903 0.2704 5.1182 21 1 1.4683 0.8084 5.5284 22 1 3.2991 -0.6478 6.1685 23 1 3.7464 1.3922 4.9367 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.7517 -0.1585 -2.1369 28 1 1.6054 -1.7199 -1.2950 29 1 4.2842 -1.7914 0.4987 30 1 3.4746 -2.8589 -0.6732 31 1 5.0841 -2.1929 -1.0399 32 1 6.0922 -0.0177 -0.6258 33 1 6.0866 -0.8658 -2.1906 34 1 7.6767 1.9842 -0.7640 35 1 6.9070 3.3464 -4.6628 36 1 2.2490 -1.6316 1.1528 37 1 3.2476 -2.3959 4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725518815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:00 Heat of formation + Delta-G solvation = 80.628883 kcal Electronic energy + Delta-G solvation = -20683.281381 eV Core-core repulsion = 17498.826439 eV Total energy + Delta-G solvation = -3184.454941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00264 -39.64004 -36.43711 -34.39092 -33.89975 -32.11583 -31.13212 -29.10885 -28.27946 -26.84149 -25.26448 -23.66538 -22.13312 -21.92145 -20.30137 -19.05165 -17.45864 -17.37040 -16.90113 -15.92518 -15.67200 -15.02208 -14.71287 -14.64100 -14.10807 -13.83430 -13.66741 -13.19893 -12.86511 -12.44188 -12.34850 -12.24166 -11.95622 -11.79976 -11.47148 -11.30734 -10.89807 -10.76421 -10.43552 -10.16267 -10.15796 -9.98731 -9.72047 -9.69979 -9.35645 -9.00049 -8.27108 -7.02345 -5.85517 -3.12474 1.66742 2.22533 2.75506 3.03329 3.23412 3.38158 3.43179 3.44726 4.33996 4.38001 4.52990 4.64103 4.86206 4.90967 5.25814 5.33830 5.44115 5.48833 5.59866 5.72738 5.83132 6.06006 6.21540 6.21908 6.24837 6.30882 6.47881 6.57223 6.68393 6.77460 6.81973 7.07893 7.57563 7.65037 8.11542 8.33251 8.34441 9.45663 10.01117 10.37975 11.37102 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.005463 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.999353 B = 5124.205725 C = 5820.110432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.050 0.950 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.072 3.928 7 C 0.503 3.497 8 O -0.523 6.523 9 C 0.111 3.889 10 N -0.365 5.365 11 C 0.256 3.744 12 N -0.549 5.549 13 C 0.187 3.813 14 N -0.292 5.292 15 N -0.720 5.720 16 C -0.232 4.232 17 H 0.067 0.933 18 C -0.012 4.012 19 N -0.936 5.936 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.287 1.287 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.219 0.781 35 H 0.214 0.786 36 H 0.382 0.618 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 -0.263 -10.578 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.068 0.932 4 C -0.010 4.010 5 N -0.324 5.324 6 C -0.071 4.071 7 C 0.288 3.712 8 O -0.398 6.398 9 C -0.015 4.015 10 N -0.156 5.156 11 C -0.041 4.041 12 N -0.276 5.276 13 C -0.116 4.116 14 N -0.119 5.119 15 N -0.362 5.362 16 C -0.364 4.364 17 H 0.085 0.915 18 C -0.208 4.208 19 N -0.585 5.585 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.214 1.214 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.235 0.765 35 H 0.231 0.769 36 H 0.216 0.784 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.903 0.262 -11.185 12.650 hybrid contribution 0.066 -0.056 1.439 1.441 sum 5.969 0.206 -9.746 11.431 Atomic orbital electron populations 1.22363 0.98734 1.00870 1.00329 1.20644 0.92030 0.96211 0.86715 0.93175 1.21889 0.78249 1.01341 0.99537 1.47543 1.06905 1.21183 1.56793 1.22024 0.97320 0.87600 1.00193 1.20170 0.88397 0.83339 0.79308 1.90755 1.74104 1.30739 1.44224 1.21704 0.93068 0.86624 1.00076 1.50007 1.32298 1.22704 1.10543 1.26083 0.90768 0.86966 1.00264 1.70513 1.28998 1.26236 1.01867 1.25960 0.92803 0.94762 0.98069 1.78137 1.22623 1.15304 0.95791 1.42389 1.78213 1.10435 1.05193 1.19188 1.36033 0.93788 0.87345 0.91516 1.24649 1.02405 0.95952 0.97794 1.69615 1.51399 1.08521 1.28976 0.86319 0.77843 0.78605 0.83729 1.21360 1.21703 1.21423 0.92546 0.94303 0.93426 0.90163 0.90768 0.89417 0.90872 0.92322 0.84944 0.86675 0.76465 0.76934 0.78384 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.54 16 2 C 0.15 3.03 3.20 -67.93 -0.22 2.81 16 3 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 4 C 0.11 1.84 5.08 -4.04 -0.02 1.82 16 5 N -0.59 -9.09 2.73 -181.57 -0.50 -9.58 16 6 C 0.07 0.93 9.01 59.85 0.54 1.47 16 7 C 0.50 8.14 7.71 -10.99 -0.08 8.06 16 8 O -0.52 -10.60 15.33 5.55 0.09 -10.52 16 9 C 0.11 1.33 5.58 -5.19 -0.03 1.30 16 10 N -0.36 -5.08 3.40 -63.81 -0.22 -5.30 16 11 C 0.26 3.19 12.63 -90.66 -1.14 2.04 16 12 N -0.55 -7.79 11.19 -15.83 -0.18 -7.97 16 13 C 0.19 2.58 13.03 -91.82 -1.20 1.39 16 14 N -0.29 -4.62 11.83 29.29 0.35 -4.27 16 15 N -0.72 -16.51 4.40 -53.43 -0.23 -16.75 16 16 C -0.23 -6.10 9.93 -15.06 -0.15 -6.25 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.94 -25.89 13.06 55.49 0.72 -25.17 16 20 Si 0.90 21.57 29.55 -169.99 -5.02 16.54 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 28 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 29 H 0.09 1.44 7.41 -51.93 -0.38 1.05 16 30 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 31 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 32 H 0.13 1.25 8.05 -51.93 -0.42 0.83 16 33 H 0.12 1.06 7.40 -51.93 -0.38 0.67 16 34 H 0.22 1.74 8.06 -52.48 -0.42 1.31 16 35 H 0.21 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.38 8.93 6.27 -40.82 -0.26 8.67 16 37 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -34.32 317.50 -7.31 -41.63 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.06 Total: 6.94 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -2.05 Total: 9.65 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -0.05 Total: -69.03 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.32 -7.31 -41.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.261 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds