Wall clock time and date at job start Mon Mar 30 2020 00:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47355 * 2 1 4 4 C 1.52999 * 109.47351 * 239.99651 * 2 1 3 5 5 N 1.46498 * 109.47070 * 185.00321 * 4 2 1 6 6 C 1.46506 * 120.00239 * 90.00054 * 5 4 2 7 7 C 1.34777 * 119.99828 * 269.71859 * 5 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 5 4 9 9 C 1.50699 * 119.99772 * 180.27730 * 7 5 4 10 10 N 1.46506 * 109.46888 * 180.02562 * 9 7 5 11 11 C 1.34426 * 126.82426 * 125.00020 * 10 9 7 12 12 N 1.30829 * 108.08067 * 179.97438 * 11 10 9 13 13 C 1.33243 * 109.82449 * 359.97438 * 12 11 10 14 14 N 1.30708 * 108.94615 * 359.75242 * 13 12 11 15 15 N 1.46500 * 109.47016 * 119.99251 * 2 1 3 16 16 C 1.36933 * 120.00493 * 275.00168 * 15 2 1 17 17 H 1.07998 * 119.99815 * 359.97438 * 16 15 2 18 18 C 1.38809 * 120.00375 * 179.97438 * 16 15 2 19 19 N 1.31619 * 120.00022 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00384 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47047 * 59.99839 * 20 18 16 22 22 H 1.48498 * 109.47775 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47242 * 300.00243 * 20 18 16 24 24 H 1.09000 * 109.47159 * 300.00652 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00310 * 1 2 3 26 26 H 1.08994 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47367 * 64.99648 * 4 2 1 28 28 H 1.09001 * 109.46864 * 304.99822 * 4 2 1 29 29 H 1.08999 * 109.46892 * 269.72399 * 6 5 4 30 30 H 1.09000 * 109.46803 * 29.71572 * 6 5 4 31 31 H 1.09000 * 109.47214 * 149.72366 * 6 5 4 32 32 H 1.08999 * 109.47685 * 300.00183 * 9 7 5 33 33 H 1.08997 * 109.47517 * 60.00530 * 9 7 5 34 34 H 1.08004 * 125.96052 * 359.97438 * 11 10 9 35 35 H 1.08001 * 125.52155 * 179.97438 * 13 12 11 36 36 H 0.97003 * 119.99999 * 95.00011 * 15 2 1 37 37 H 0.96997 * 120.00281 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1904 6 6 4.1258 -1.9920 -0.5609 7 6 4.2676 0.1464 -1.7205 8 8 3.7496 1.1113 -2.2416 9 6 5.7695 0.0352 -1.6655 10 7 6.3697 1.2095 -2.3035 11 6 7.2656 2.0518 -1.7604 12 7 7.5525 2.9678 -2.6494 13 6 6.8631 2.7441 -3.7674 14 7 6.1286 1.6750 -3.6064 15 7 2.0183 -0.6905 1.1963 16 6 2.1490 -0.0073 2.3758 17 1 1.8926 1.0407 2.4241 18 6 2.6112 -0.6617 3.5094 19 7 2.9243 -1.9387 3.4504 20 14 2.7903 0.2704 5.1182 21 1 1.4683 0.8084 5.5284 22 1 3.2991 -0.6478 6.1685 23 1 3.7464 1.3922 4.9367 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.7517 -0.1585 -2.1369 28 1 1.6054 -1.7199 -1.2950 29 1 4.2842 -1.7914 0.4987 30 1 3.4746 -2.8589 -0.6732 31 1 5.0841 -2.1929 -1.0399 32 1 6.0922 -0.0177 -0.6258 33 1 6.0866 -0.8658 -2.1906 34 1 7.6767 1.9842 -0.7640 35 1 6.9070 3.3464 -4.6628 36 1 2.2490 -1.6316 1.1528 37 1 3.2476 -2.3959 4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725518815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:00 Heat of formation + Delta-G solvation = 58.727644 kcal Electronic energy + Delta-G solvation = -20684.231090 eV Core-core repulsion = 17498.826439 eV Total energy + Delta-G solvation = -3185.404650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.99912 -40.89798 -37.94856 -35.85881 -35.00628 -33.90243 -32.15395 -30.79803 -29.48516 -28.01920 -26.58742 -25.51191 -23.21183 -22.89460 -21.80620 -20.31463 -19.26421 -18.49608 -18.08872 -17.08775 -16.97581 -16.43286 -16.18814 -15.74139 -15.52661 -15.25443 -15.00409 -14.47494 -14.19114 -13.80530 -13.62662 -13.57615 -13.25718 -13.11870 -12.83068 -12.77192 -12.66585 -12.49137 -12.21728 -11.88304 -11.63618 -11.31921 -11.02352 -10.96407 -10.75423 -10.47328 -9.59607 -8.93049 -7.90949 -5.16242 0.68068 1.29446 1.48070 1.49580 1.54728 1.55211 2.02202 2.11001 2.57722 3.32301 3.42734 3.52802 3.70046 3.89779 4.03458 4.05764 4.13464 4.30049 4.39481 4.41811 4.64421 4.67837 4.73462 4.85098 5.03282 5.19883 5.22722 5.25057 5.35740 5.50222 5.53861 5.63904 5.84773 6.31330 6.39982 7.09407 7.14539 7.40241 8.11431 8.42602 9.30790 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.005463 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.999353 B = 5124.205725 C = 5820.110432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.017 0.983 4 C 0.119 3.881 5 N -0.593 5.593 6 C 0.074 3.926 7 C 0.494 3.506 8 O -0.572 6.572 9 C 0.114 3.886 10 N -0.374 5.374 11 C 0.259 3.741 12 N -0.574 5.574 13 C 0.184 3.816 14 N -0.333 5.333 15 N -0.721 5.721 16 C -0.237 4.237 17 H 0.056 0.944 18 C -0.056 4.056 19 N -0.955 5.955 20 Si 0.956 3.044 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.285 1.285 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.258 0.742 35 H 0.240 0.760 36 H 0.381 0.619 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -0.964 -10.685 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.035 0.965 4 C -0.005 4.005 5 N -0.324 5.324 6 C -0.068 4.068 7 C 0.281 3.719 8 O -0.451 6.451 9 C -0.011 4.011 10 N -0.165 5.165 11 C -0.036 4.036 12 N -0.302 5.302 13 C -0.118 4.118 14 N -0.160 5.160 15 N -0.363 5.363 16 C -0.369 4.369 17 H 0.074 0.926 18 C -0.250 4.250 19 N -0.605 5.605 20 Si 0.787 3.213 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.211 1.211 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.274 0.726 35 H 0.256 0.744 36 H 0.215 0.785 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.746 -0.454 -11.302 13.170 hybrid contribution -0.223 0.198 1.453 1.483 sum 6.523 -0.256 -9.849 11.816 Atomic orbital electron populations 1.22228 0.97187 1.01528 1.00489 1.20716 0.93074 0.94593 0.87101 0.96465 1.21747 0.79396 1.01969 0.97382 1.47673 1.06545 1.21808 1.56362 1.22089 0.99587 0.86743 0.98396 1.20954 0.90284 0.82453 0.78177 1.90730 1.75407 1.32594 1.46358 1.21931 0.89713 0.87352 1.02066 1.50126 1.32738 1.23428 1.10203 1.26910 0.89737 0.85763 1.01239 1.70538 1.29913 1.27258 1.02470 1.26554 0.91909 0.94459 0.98912 1.78065 1.24060 1.16570 0.97349 1.42387 1.78395 1.10267 1.05251 1.19334 1.35325 0.93518 0.88715 0.92646 1.25193 1.02968 0.96743 1.00089 1.69717 1.52263 1.09309 1.29247 0.85485 0.77486 0.77576 0.80767 1.21556 1.21748 1.21112 0.94668 0.91856 0.92441 0.90321 0.88542 0.92760 0.89961 0.87965 0.82167 0.83439 0.72600 0.74403 0.78542 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.49 71.98 0.68 -4.70 16 2 C 0.15 6.04 3.20 44.99 0.14 6.19 16 3 H 0.02 0.78 8.08 -2.38 -0.02 0.76 16 4 C 0.12 3.74 5.08 86.38 0.44 4.18 16 5 N -0.59 -17.34 2.73 -846.76 -2.31 -19.65 16 6 C 0.07 1.75 9.01 127.77 1.15 2.90 16 7 C 0.49 15.43 7.71 87.66 0.68 16.10 16 8 O -0.57 -23.27 15.33 -3.04 -0.05 -23.32 16 9 C 0.11 2.43 5.58 85.63 0.48 2.91 16 10 N -0.37 -9.80 3.40 -355.80 -1.21 -11.01 16 11 C 0.26 5.95 12.63 180.36 2.28 8.22 16 12 N -0.57 -15.58 11.19 -204.00 -2.28 -17.86 16 13 C 0.18 4.95 13.03 180.77 2.36 7.31 16 14 N -0.33 -10.32 11.83 -61.25 -0.72 -11.04 16 15 N -0.72 -32.95 4.40 -322.95 -1.42 -34.37 16 16 C -0.24 -12.48 9.93 84.03 0.83 -11.65 16 17 H 0.06 3.00 7.83 -2.91 -0.02 2.97 16 18 C -0.06 -3.01 5.50 84.86 0.47 -2.54 16 19 N -0.96 -52.43 13.06 21.65 0.28 -52.14 16 20 Si 0.96 44.10 29.55 68.60 2.03 46.12 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.53 7.42 -2.39 -0.02 2.51 16 28 H 0.10 2.61 7.89 -2.39 -0.02 2.59 16 29 H 0.05 1.70 7.41 -2.39 -0.02 1.68 16 30 H 0.08 1.80 7.89 -2.39 -0.02 1.78 16 31 H 0.10 1.50 6.44 -2.39 -0.02 1.48 16 32 H 0.16 2.49 8.05 -2.39 -0.02 2.47 16 33 H 0.15 2.15 7.40 -2.39 -0.02 2.14 16 34 H 0.26 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.24 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.38 17.61 6.27 -92.71 -0.58 17.02 16 37 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -75.06 317.50 4.32 -70.75 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.50 Total: 23.61 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 9.50 Total: 28.92 kcal Atomic # 7 Polarization: -138.41 SS G_CDS: -7.67 Total: -146.08 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -75.06 4.32 -70.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.473 kcal (2) G-P(sol) polarization free energy of solvation -75.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds