Wall clock time and date at job start Mon Mar 30 2020 00:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46604 * 2 1 4 4 C 1.52996 * 109.47339 * 120.00546 * 2 1 3 5 5 N 1.46500 * 109.47136 * 175.00150 * 4 2 1 6 6 C 1.46500 * 119.99953 * 269.99970 * 5 4 2 7 7 C 1.34773 * 120.00003 * 89.99637 * 5 4 2 8 8 O 1.21559 * 120.00335 * 3.37948 * 7 5 4 9 9 C 1.47802 * 119.99820 * 183.37820 * 7 5 4 10 10 C 1.40926 * 127.23545 * 173.43630 * 9 7 5 11 11 N 1.31135 * 105.77628 * 179.77358 * 10 9 7 12 12 N 1.28518 * 109.05621 * 0.22144 * 11 10 9 13 13 C 1.46497 * 124.44239 * 180.02562 * 12 11 10 14 14 N 1.28584 * 111.11643 * 0.02562 * 12 11 10 15 15 N 1.46499 * 109.46734 * 240.00781 * 2 1 3 16 16 C 1.36934 * 120.00648 * 84.99696 * 15 2 1 17 17 H 1.08007 * 119.99471 * 0.02562 * 16 15 2 18 18 C 1.38807 * 120.00116 * 179.97438 * 16 15 2 19 19 N 1.31611 * 120.00414 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46843 * 89.99869 * 20 18 16 22 22 H 1.48498 * 109.46945 * 210.00001 * 20 18 16 23 23 H 1.48499 * 109.47200 * 330.00298 * 20 18 16 24 24 H 1.08999 * 109.46984 * 299.99524 * 1 2 3 25 25 H 1.08997 * 109.47541 * 59.99849 * 1 2 3 26 26 H 1.09002 * 109.46604 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47366 * 54.99945 * 4 2 1 28 28 H 1.09005 * 109.46678 * 294.99835 * 4 2 1 29 29 H 1.09006 * 109.46848 * 264.06924 * 6 5 4 30 30 H 1.09005 * 109.46904 * 24.06399 * 6 5 4 31 31 H 1.08993 * 109.47330 * 144.06827 * 6 5 4 32 32 H 1.08005 * 127.11360 * 0.03688 * 10 9 7 33 33 H 1.09004 * 109.47188 * 89.98075 * 13 12 11 34 34 H 1.08998 * 109.47126 * 209.98135 * 13 12 11 35 35 H 1.09005 * 109.47026 * 329.97967 * 13 12 11 36 36 H 0.97001 * 119.99588 * 264.99691 * 15 2 1 37 37 H 0.97004 * 120.00616 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9919 0.5609 7 6 4.2676 0.1492 1.7154 8 8 3.7500 1.0859 2.2919 9 6 5.7387 0.0800 1.5904 10 6 6.6735 1.0664 1.9635 11 7 7.8517 0.5685 1.6744 12 7 7.6995 -0.6027 1.1678 13 6 8.7993 -1.4630 0.7245 14 7 6.4553 -0.9205 1.1011 15 7 2.0183 -0.6905 -1.1963 16 6 2.1490 -0.0073 -2.3758 17 1 1.8925 1.0407 -2.4241 18 6 2.6121 -0.6615 -3.5091 19 7 2.9261 -1.9383 -3.4499 20 14 2.7911 0.2707 -5.1180 21 1 4.1534 0.8558 -5.2022 22 1 2.5812 -0.6605 -6.2556 23 1 1.7811 1.3578 -5.1753 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.6055 -1.7199 1.2950 28 1 1.7517 -0.1584 2.1369 29 1 4.3784 -2.7262 1.3260 30 1 3.4321 -2.4353 -0.1534 31 1 5.0327 -1.6814 0.0420 32 1 6.4633 2.0311 2.4013 33 1 9.1275 -2.0896 1.5539 34 1 8.4583 -2.0950 -0.0955 35 1 9.6303 -0.8446 0.3852 36 1 2.2490 -1.6316 -1.1528 37 1 3.2501 -2.3954 -4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725518873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:43 Heat of formation + Delta-G solvation = 105.123146 kcal Electronic energy + Delta-G solvation = -20915.475205 eV Core-core repulsion = 17732.082414 eV Total energy + Delta-G solvation = -3183.392790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.53905 -39.33752 -36.29017 -34.30777 -33.70434 -32.59787 -31.84467 -28.87693 -28.10217 -26.71261 -25.81123 -23.83186 -22.95733 -21.93746 -20.29839 -19.14155 -17.27952 -17.24667 -16.94837 -16.55944 -15.66691 -15.07732 -14.71853 -14.51176 -13.92447 -13.51674 -13.36640 -13.03960 -12.98494 -12.45985 -12.22475 -12.10915 -12.03520 -11.60941 -11.40524 -11.25108 -10.85212 -10.68274 -10.55836 -10.39092 -10.21494 -10.00365 -9.81299 -9.58321 -9.33431 -8.91040 -8.11512 -6.92233 -5.75769 -3.02166 1.49402 2.06014 2.22270 3.32534 3.43473 3.49262 3.50517 3.61350 4.02383 4.60994 4.76952 4.85162 5.03662 5.13495 5.15821 5.52104 5.58041 5.65109 5.76762 5.82184 5.95210 6.03215 6.04452 6.17458 6.30681 6.39554 6.42184 6.66679 6.79600 6.88401 6.91105 7.18519 7.71530 7.75978 8.19336 8.43750 8.49248 9.55017 10.11568 10.47264 11.47187 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.006813 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.079358 B = 4108.690979 C = 5174.452375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.052 0.948 4 C 0.110 3.890 5 N -0.577 5.577 6 C 0.082 3.918 7 C 0.605 3.395 8 O -0.542 6.542 9 C -0.034 4.034 10 C 0.031 3.969 11 N -0.297 5.297 12 N -0.151 5.151 13 C 0.105 3.895 14 N -0.240 5.240 15 N -0.720 5.720 16 C -0.229 4.229 17 H 0.068 0.932 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.903 3.097 21 H -0.292 1.292 22 H -0.292 1.292 23 H -0.283 1.283 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.206 0.794 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.381 0.619 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -1.288 10.850 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.013 4.013 5 N -0.307 5.307 6 C -0.061 4.061 7 C 0.390 3.610 8 O -0.418 6.418 9 C -0.197 4.197 10 C -0.152 4.152 11 N -0.137 5.137 12 N -0.054 5.054 13 C -0.035 4.035 14 N -0.088 5.088 15 N -0.363 5.363 16 C -0.360 4.360 17 H 0.086 0.914 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.734 3.266 21 H -0.220 1.220 22 H -0.219 1.219 23 H -0.208 1.208 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.223 0.777 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.217 0.783 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.048 -1.507 10.585 14.006 hybrid contribution -0.398 0.602 -0.928 1.176 sum 8.651 -0.905 9.657 12.996 Atomic orbital electron populations 1.22362 0.98655 1.00869 1.00322 1.20679 0.92082 0.96302 0.86678 0.93000 1.21935 0.78183 1.01525 0.99688 1.47445 1.06700 1.20930 1.55619 1.22131 1.00330 0.86570 0.97119 1.16673 0.82869 0.82416 0.79073 1.90755 1.73063 1.33565 1.44445 1.23139 0.96489 0.93361 1.06715 1.24764 0.86279 1.01718 1.02469 1.73938 1.26571 0.97817 1.15340 1.48140 1.05053 1.10893 1.41269 1.22204 0.85724 0.93431 1.02140 1.74704 0.91348 1.25540 1.17193 1.42463 1.78149 1.10446 1.05233 1.19234 1.35733 0.93798 0.87274 0.91403 1.24652 1.02503 0.95981 0.97828 1.69629 1.51497 1.08547 1.28737 0.86245 0.77716 0.78658 0.83940 1.22007 1.21857 1.20837 0.94222 0.92545 0.93447 0.90632 0.89807 0.93754 0.89680 0.89124 0.77742 0.89099 0.87478 0.87857 0.78322 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.15 3.14 3.20 -67.93 -0.22 2.92 16 3 H 0.05 1.18 8.08 -51.93 -0.42 0.76 16 4 C 0.11 1.92 5.05 -4.04 -0.02 1.90 16 5 N -0.58 -10.54 2.73 -182.71 -0.50 -11.04 16 6 C 0.08 1.42 9.17 59.85 0.55 1.97 16 7 C 0.60 11.46 7.68 -12.35 -0.09 11.36 16 8 O -0.54 -11.10 16.52 5.31 0.09 -11.01 16 9 C -0.03 -0.59 6.86 -82.68 -0.57 -1.16 16 10 C 0.03 0.47 12.05 -16.83 -0.20 0.27 16 11 N -0.30 -4.29 12.01 30.90 0.37 -3.92 16 12 N -0.15 -2.06 4.34 -16.63 -0.07 -2.13 16 13 C 0.10 0.83 11.55 59.85 0.69 1.52 16 14 N -0.24 -3.83 8.72 33.42 0.29 -3.54 16 15 N -0.72 -17.59 4.57 -53.42 -0.24 -17.83 16 16 C -0.23 -6.33 9.93 -15.06 -0.15 -6.48 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.40 5.50 -17.44 -0.10 -0.50 16 19 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 20 Si 0.90 22.56 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.18 8.07 -51.93 -0.42 0.77 16 28 H 0.08 1.39 7.38 -51.93 -0.38 1.01 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.62 5.79 -51.93 -0.30 1.32 16 31 H 0.09 1.70 5.38 -51.93 -0.28 1.42 16 32 H 0.21 2.55 8.06 -52.48 -0.42 2.13 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.38 9.58 5.41 -40.82 -0.22 9.36 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -33.38 314.60 -4.33 -37.71 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.95 Total: 6.83 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 0.24 Total: 9.22 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 0.57 Total: -65.03 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.38 -4.33 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.833 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds