Wall clock time and date at job start Mon Mar 30 2020 00:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46604 * 2 1 4 4 C 1.52996 * 109.47339 * 120.00546 * 2 1 3 5 5 N 1.46500 * 109.47136 * 175.00150 * 4 2 1 6 6 C 1.46500 * 119.99953 * 269.99970 * 5 4 2 7 7 C 1.34773 * 120.00003 * 89.99637 * 5 4 2 8 8 O 1.21559 * 120.00335 * 3.37948 * 7 5 4 9 9 C 1.47802 * 119.99820 * 183.37820 * 7 5 4 10 10 C 1.40926 * 127.23545 * 173.43630 * 9 7 5 11 11 N 1.31135 * 105.77628 * 179.77358 * 10 9 7 12 12 N 1.28518 * 109.05621 * 0.22144 * 11 10 9 13 13 C 1.46497 * 124.44239 * 180.02562 * 12 11 10 14 14 N 1.28584 * 111.11643 * 0.02562 * 12 11 10 15 15 N 1.46499 * 109.46734 * 240.00781 * 2 1 3 16 16 C 1.36934 * 120.00648 * 84.99696 * 15 2 1 17 17 H 1.08007 * 119.99471 * 0.02562 * 16 15 2 18 18 C 1.38807 * 120.00116 * 179.97438 * 16 15 2 19 19 N 1.31611 * 120.00414 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46843 * 89.99869 * 20 18 16 22 22 H 1.48498 * 109.46945 * 210.00001 * 20 18 16 23 23 H 1.48499 * 109.47200 * 330.00298 * 20 18 16 24 24 H 1.08999 * 109.46984 * 299.99524 * 1 2 3 25 25 H 1.08997 * 109.47541 * 59.99849 * 1 2 3 26 26 H 1.09002 * 109.46604 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47366 * 54.99945 * 4 2 1 28 28 H 1.09005 * 109.46678 * 294.99835 * 4 2 1 29 29 H 1.09006 * 109.46848 * 264.06924 * 6 5 4 30 30 H 1.09005 * 109.46904 * 24.06399 * 6 5 4 31 31 H 1.08993 * 109.47330 * 144.06827 * 6 5 4 32 32 H 1.08005 * 127.11360 * 0.03688 * 10 9 7 33 33 H 1.09004 * 109.47188 * 89.98075 * 13 12 11 34 34 H 1.08998 * 109.47126 * 209.98135 * 13 12 11 35 35 H 1.09005 * 109.47026 * 329.97967 * 13 12 11 36 36 H 0.97001 * 119.99588 * 264.99691 * 15 2 1 37 37 H 0.97004 * 120.00616 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9919 0.5609 7 6 4.2676 0.1492 1.7154 8 8 3.7500 1.0859 2.2919 9 6 5.7387 0.0800 1.5904 10 6 6.6735 1.0664 1.9635 11 7 7.8517 0.5685 1.6744 12 7 7.6995 -0.6027 1.1678 13 6 8.7993 -1.4630 0.7245 14 7 6.4553 -0.9205 1.1011 15 7 2.0183 -0.6905 -1.1963 16 6 2.1490 -0.0073 -2.3758 17 1 1.8925 1.0407 -2.4241 18 6 2.6121 -0.6615 -3.5091 19 7 2.9261 -1.9383 -3.4499 20 14 2.7911 0.2707 -5.1180 21 1 4.1534 0.8558 -5.2022 22 1 2.5812 -0.6605 -6.2556 23 1 1.7811 1.3578 -5.1753 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.6055 -1.7199 1.2950 28 1 1.7517 -0.1584 2.1369 29 1 4.3784 -2.7262 1.3260 30 1 3.4321 -2.4353 -0.1534 31 1 5.0327 -1.6814 0.0420 32 1 6.4633 2.0311 2.4013 33 1 9.1275 -2.0896 1.5539 34 1 8.4583 -2.0950 -0.0955 35 1 9.6303 -0.8446 0.3852 36 1 2.2490 -1.6316 -1.1528 37 1 3.2501 -2.3954 -4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725518873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:42 Heat of formation + Delta-G solvation = 81.474184 kcal Electronic energy + Delta-G solvation = -20916.500701 eV Core-core repulsion = 17732.082414 eV Total energy + Delta-G solvation = -3184.418286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.67704 -40.78917 -37.92117 -35.91532 -34.77340 -34.09210 -33.44201 -30.72294 -29.14396 -28.13103 -27.16291 -25.74506 -24.33974 -23.01459 -21.88036 -20.57403 -19.27272 -18.40715 -18.06730 -17.90164 -17.10904 -16.71771 -16.28332 -15.78003 -15.63096 -15.19700 -14.89596 -14.06040 -13.81672 -13.76709 -13.67456 -13.64820 -13.48822 -13.09299 -12.91673 -12.79512 -12.74618 -12.47775 -12.18258 -11.95559 -11.74499 -11.58091 -11.40941 -11.25045 -10.95012 -10.44954 -9.59136 -8.93239 -7.91329 -5.16376 0.25026 0.88777 1.29715 1.44652 1.45306 1.53294 1.97766 2.23871 2.56382 2.87562 3.42114 3.62139 3.89156 3.98966 4.12632 4.28727 4.31847 4.34965 4.48614 4.50651 4.64810 4.67196 4.72211 4.76934 4.89209 4.91136 5.05902 5.20533 5.28703 5.40395 5.53621 5.63823 5.68423 6.28730 6.34583 6.95634 7.13406 7.39024 8.12949 8.40503 9.31212 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.006813 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.079358 B = 4108.690979 C = 5174.452375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.025 0.975 4 C 0.115 3.885 5 N -0.582 5.582 6 C 0.092 3.908 7 C 0.600 3.400 8 O -0.565 6.565 9 C -0.066 4.066 10 C 0.027 3.973 11 N -0.297 5.297 12 N -0.140 5.140 13 C 0.088 3.912 14 N -0.247 5.247 15 N -0.725 5.725 16 C -0.233 4.233 17 H 0.061 0.939 18 C -0.066 4.066 19 N -0.958 5.958 20 Si 0.959 3.041 21 H -0.294 1.294 22 H -0.292 1.292 23 H -0.277 1.277 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.223 0.777 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.378 0.622 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.939 -1.542 11.403 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.043 0.957 4 C -0.008 4.008 5 N -0.311 5.311 6 C -0.051 4.051 7 C 0.386 3.614 8 O -0.444 6.444 9 C -0.227 4.227 10 C -0.155 4.155 11 N -0.138 5.138 12 N -0.045 5.045 13 C -0.049 4.049 14 N -0.097 5.097 15 N -0.368 5.368 16 C -0.365 4.365 17 H 0.079 0.921 18 C -0.259 4.259 19 N -0.609 5.609 20 Si 0.789 3.211 21 H -0.222 1.222 22 H -0.219 1.219 23 H -0.202 1.202 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.212 0.788 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.681 -1.749 11.160 14.877 hybrid contribution -0.511 0.668 -1.067 1.358 sum 9.169 -1.081 10.093 13.679 Atomic orbital electron populations 1.22197 0.96440 1.01593 1.00883 1.20826 0.93576 0.94852 0.86657 0.95708 1.21922 0.78025 1.02539 0.98329 1.47555 1.07024 1.21088 1.55411 1.22026 0.99054 0.86645 0.97367 1.16939 0.83767 0.82052 0.78648 1.90722 1.73798 1.34312 1.45560 1.22996 0.95962 0.94786 1.08940 1.25095 0.85977 1.02211 1.02235 1.73950 1.26121 0.98200 1.15530 1.48756 1.05318 1.10910 1.39467 1.22768 0.84791 0.93718 1.03644 1.74634 0.92362 1.25496 1.17192 1.42539 1.78421 1.10265 1.05562 1.19448 1.34770 0.93676 0.88593 0.92112 1.25283 1.03214 0.96868 1.00486 1.69747 1.52575 1.09513 1.29095 0.85358 0.77420 0.77649 0.80650 1.22192 1.21880 1.20187 0.91105 0.94517 0.92593 0.88411 0.88581 0.91084 0.91519 0.90479 0.76027 0.86296 0.86657 0.85763 0.78762 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.49 71.98 0.68 -4.60 16 2 C 0.15 6.11 3.20 44.99 0.14 6.25 16 3 H 0.02 1.14 8.08 -2.39 -0.02 1.12 16 4 C 0.11 3.88 5.05 86.38 0.44 4.31 16 5 N -0.58 -20.95 2.73 -850.25 -2.32 -23.27 16 6 C 0.09 3.16 9.17 127.77 1.17 4.33 16 7 C 0.60 22.65 7.68 86.77 0.67 23.31 16 8 O -0.57 -23.17 16.52 -3.90 -0.06 -23.23 16 9 C -0.07 -2.25 6.86 42.24 0.29 -1.96 16 10 C 0.03 0.80 12.05 85.46 1.03 1.83 16 11 N -0.30 -8.16 12.01 -56.16 -0.67 -8.83 16 12 N -0.14 -3.57 4.34 -206.54 -0.90 -4.47 16 13 C 0.09 1.17 11.55 127.77 1.48 2.65 16 14 N -0.25 -7.65 8.72 -48.16 -0.42 -8.07 16 15 N -0.72 -35.56 4.57 -322.94 -1.47 -37.03 16 16 C -0.23 -12.95 9.93 84.03 0.83 -12.12 16 17 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 18 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 19 N -0.96 -56.24 13.06 21.65 0.28 -55.95 16 20 Si 0.96 46.50 29.55 68.60 2.03 48.53 16 21 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.10 2.87 8.07 -2.39 -0.02 2.85 16 28 H 0.10 3.04 7.38 -2.38 -0.02 3.02 16 29 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.07 2.54 5.79 -2.38 -0.01 2.52 16 31 H 0.08 2.88 5.38 -2.39 -0.01 2.87 16 32 H 0.22 5.38 8.06 -2.91 -0.02 5.35 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.12 1.15 8.14 -2.38 -0.02 1.14 16 36 H 0.38 19.06 5.41 -92.71 -0.50 18.56 16 37 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.14 314.60 4.24 -66.90 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.58 Total: 24.67 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 7.20 Total: 20.76 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -5.50 Total: -137.63 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -71.14 4.24 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725518873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.375 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds