Wall clock time and date at job start Mon Mar 30 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46793 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99612 * 2 1 3 5 5 N 1.46499 * 109.46840 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21684 * 119.99938 * 0.02562 * 6 5 4 8 8 C 1.46775 * 120.00079 * 180.02562 * 6 5 4 9 9 C 1.41490 * 126.51727 * 359.68867 * 8 6 5 10 10 N 1.30285 * 108.18895 * 179.81915 * 9 8 6 11 11 N 1.39890 * 109.23167 * 0.44805 * 10 9 8 12 12 C 1.46501 * 125.74961 * 179.73607 * 11 10 9 13 13 C 1.34846 * 108.50977 * 359.71370 * 11 10 9 14 14 N 1.38006 * 126.45217 * 180.02562 * 13 11 10 15 15 N 1.46496 * 109.47348 * 239.99940 * 2 1 3 16 16 C 1.36941 * 120.00198 * 84.99697 * 15 2 1 17 17 H 1.07996 * 119.99379 * 0.02562 * 16 15 2 18 18 C 1.38810 * 119.99828 * 180.02562 * 16 15 2 19 19 N 1.31617 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99611 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47352 * 60.00616 * 20 18 16 22 22 H 1.48502 * 109.47208 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47642 * 300.00345 * 20 18 16 24 24 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47312 * 300.00425 * 1 2 3 26 26 H 1.09004 * 109.46964 * 60.00223 * 1 2 3 27 27 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 29 29 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 30 30 H 1.08005 * 125.90364 * 359.97438 * 9 8 6 31 31 H 1.09003 * 109.46754 * 269.97875 * 12 11 10 32 32 H 1.09003 * 109.47177 * 29.96992 * 12 11 10 33 33 H 1.08992 * 109.47503 * 149.97162 * 12 11 10 34 34 H 0.96998 * 120.00395 * 179.97438 * 14 13 11 35 35 H 0.97002 * 119.99715 * 359.97438 * 14 13 11 36 36 H 0.97002 * 119.99429 * 265.00252 * 15 2 1 37 37 H 0.97004 * 120.00027 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4291 2.1908 7 8 3.5677 -1.8864 3.1423 8 6 5.6357 -1.5340 2.1324 9 6 6.4731 -1.0593 1.0954 10 7 7.7067 -1.3370 1.4095 11 7 7.7302 -2.0032 2.6393 12 6 8.9295 -2.4865 3.3281 13 6 6.4632 -2.1253 3.0844 14 7 6.0617 -2.7230 4.2617 15 7 2.0184 -0.6906 -1.1961 16 6 2.1492 -0.0075 -2.3758 17 1 1.8926 1.0404 -2.4241 18 6 2.6114 -0.6621 -3.5092 19 7 2.9236 -1.9393 -3.4503 20 14 2.7905 0.2699 -5.1181 21 1 3.7466 1.3916 -4.9367 22 1 3.2994 -0.6485 -6.1682 23 1 1.4686 0.8078 -5.5285 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7515 -0.1582 2.1370 28 1 1.6053 -1.7197 1.2953 29 1 3.9824 -0.4622 0.4320 30 1 6.1464 -0.5520 0.1996 31 1 9.1429 -3.5078 3.0126 32 1 9.7749 -1.8451 3.0790 33 1 8.7630 -2.4662 4.4051 34 1 5.1198 -2.7585 4.4910 35 1 6.7213 -3.1075 4.8600 36 1 2.2491 -1.6318 -1.1525 37 1 3.2462 -2.3968 -4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731587744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:41 Heat of formation + Delta-G solvation = 46.690612 kcal Electronic energy + Delta-G solvation = -20204.508442 eV Core-core repulsion = 17018.581827 eV Total energy + Delta-G solvation = -3185.926615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20380 -38.68526 -36.15997 -34.92661 -33.31169 -33.02426 -31.70719 -28.92739 -28.44251 -27.21439 -25.38548 -23.59555 -22.20841 -20.74685 -20.04755 -19.63414 -17.93526 -17.28985 -16.59994 -16.00032 -15.76175 -15.36206 -14.97330 -14.51342 -14.27807 -13.67330 -13.53647 -13.26322 -12.89065 -12.83531 -12.77102 -12.12069 -12.01511 -11.81096 -11.30983 -11.22438 -10.82047 -10.74290 -10.67963 -10.30466 -9.95878 -9.65528 -9.41658 -8.98300 -8.92281 -8.46663 -7.71993 -6.97953 -5.75513 -3.05624 1.94979 2.25033 2.46691 3.45018 3.50145 3.50928 3.64503 3.88123 3.96528 4.43272 4.59989 4.91332 5.02903 5.15841 5.33907 5.52353 5.54241 5.57897 5.67056 5.86284 6.04730 6.18786 6.26546 6.31351 6.43289 6.64070 6.68849 6.83232 6.98710 7.15676 7.31637 7.42231 7.70935 7.87608 8.22694 8.41971 8.84972 9.53745 10.09572 10.45380 11.46270 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.005047 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.178950 B = 5546.229268 C = 6709.519961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.119 3.881 5 N -0.709 5.709 6 C 0.601 3.399 7 O -0.585 6.585 8 C -0.364 4.364 9 C 0.121 3.879 10 N -0.310 5.310 11 N -0.405 5.405 12 C 0.104 3.896 13 C 0.427 3.573 14 N -0.832 5.832 15 N -0.723 5.723 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.409 0.591 30 H 0.193 0.807 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.431 0.569 35 H 0.396 0.604 36 H 0.386 0.614 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 -0.214 15.570 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.006 4.006 5 N -0.359 5.359 6 C 0.391 3.609 7 O -0.468 6.468 8 C -0.384 4.384 9 C -0.069 4.069 10 N -0.128 5.128 11 N -0.194 5.194 12 C -0.038 4.038 13 C 0.193 3.807 14 N -0.383 5.383 15 N -0.366 5.366 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.214 1.214 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.210 0.790 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.268 0.732 35 H 0.224 0.776 36 H 0.220 0.780 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.434 -0.340 15.719 18.335 hybrid contribution -0.503 -0.020 -0.788 0.936 sum 8.931 -0.360 14.930 17.401 Atomic orbital electron populations 1.22362 0.98460 1.01200 1.00256 1.20515 0.92566 0.95774 0.86293 0.92907 1.21620 0.79691 1.00885 0.98359 1.45640 1.07818 1.59133 1.23312 1.16923 0.85152 0.76895 0.81954 1.90613 1.70075 1.51384 1.34710 1.19370 0.93895 1.24411 1.00686 1.23942 0.89383 0.95616 0.97946 1.77149 1.20891 1.18615 0.96172 1.48175 1.03705 1.49377 1.18100 1.21745 0.85755 1.00552 0.95731 1.18043 0.85150 0.90367 0.87111 1.41737 1.12897 1.64247 1.19402 1.42465 1.78049 1.10853 1.05199 1.19177 1.36995 0.93837 0.87375 0.91200 1.24724 1.02062 0.95875 0.97931 1.69657 1.50517 1.08579 1.28981 0.86309 0.77728 0.78617 0.83730 1.21238 1.21801 1.21389 0.93259 0.94257 0.92425 0.92062 0.92039 0.75507 0.79043 0.90910 0.88872 0.90365 0.73246 0.77582 0.78030 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 2 C 0.16 3.03 3.05 -67.93 -0.21 2.82 16 3 H 0.05 1.01 8.08 -51.92 -0.42 0.59 16 4 C 0.12 2.10 5.23 -4.04 -0.02 2.08 16 5 N -0.71 -12.55 5.38 -61.59 -0.33 -12.89 16 6 C 0.60 10.80 7.79 -12.81 -0.10 10.70 16 7 O -0.58 -11.30 15.14 5.20 0.08 -11.22 16 8 C -0.36 -5.92 6.15 -104.81 -0.64 -6.56 16 9 C 0.12 1.89 11.49 -16.97 -0.20 1.70 16 10 N -0.31 -4.77 12.47 30.88 0.39 -4.38 16 11 N -0.41 -5.16 4.00 -66.82 -0.27 -5.43 16 12 C 0.10 0.77 11.25 59.85 0.67 1.44 16 13 C 0.43 5.89 7.98 -153.79 -1.23 4.66 16 14 N -0.83 -8.70 9.02 31.40 0.28 -8.42 16 15 N -0.72 -17.15 4.56 -53.42 -0.24 -17.40 16 16 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 20 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.41 7.30 7.08 -40.82 -0.29 7.01 16 30 H 0.19 2.74 7.50 -52.48 -0.39 2.35 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.36 7.46 -51.93 -0.39 -0.03 16 34 H 0.43 5.06 7.01 -40.82 -0.29 4.78 16 35 H 0.40 2.61 8.04 -40.82 -0.33 2.29 16 36 H 0.39 9.98 7.80 -40.82 -0.32 9.66 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -32.92 318.47 -6.14 -39.06 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -4.93 Total: 18.23 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.62 Total: 7.43 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: 0.55 Total: -75.15 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.92 -6.14 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731587744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.748 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds