Wall clock time and date at job start Mon Mar 30 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46793 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99612 * 2 1 3 5 5 N 1.46499 * 109.46840 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21684 * 119.99938 * 0.02562 * 6 5 4 8 8 C 1.46775 * 120.00079 * 180.02562 * 6 5 4 9 9 C 1.41490 * 126.51727 * 359.68867 * 8 6 5 10 10 N 1.30285 * 108.18895 * 179.81915 * 9 8 6 11 11 N 1.39890 * 109.23167 * 0.44805 * 10 9 8 12 12 C 1.46501 * 125.74961 * 179.73607 * 11 10 9 13 13 C 1.34846 * 108.50977 * 359.71370 * 11 10 9 14 14 N 1.38006 * 126.45217 * 180.02562 * 13 11 10 15 15 N 1.46496 * 109.47348 * 239.99940 * 2 1 3 16 16 C 1.36941 * 120.00198 * 84.99697 * 15 2 1 17 17 H 1.07996 * 119.99379 * 0.02562 * 16 15 2 18 18 C 1.38810 * 119.99828 * 180.02562 * 16 15 2 19 19 N 1.31617 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99611 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47352 * 60.00616 * 20 18 16 22 22 H 1.48502 * 109.47208 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47642 * 300.00345 * 20 18 16 24 24 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47312 * 300.00425 * 1 2 3 26 26 H 1.09004 * 109.46964 * 60.00223 * 1 2 3 27 27 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 29 29 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 30 30 H 1.08005 * 125.90364 * 359.97438 * 9 8 6 31 31 H 1.09003 * 109.46754 * 269.97875 * 12 11 10 32 32 H 1.09003 * 109.47177 * 29.96992 * 12 11 10 33 33 H 1.08992 * 109.47503 * 149.97162 * 12 11 10 34 34 H 0.96998 * 120.00395 * 179.97438 * 14 13 11 35 35 H 0.97002 * 119.99715 * 359.97438 * 14 13 11 36 36 H 0.97002 * 119.99429 * 265.00252 * 15 2 1 37 37 H 0.97004 * 120.00027 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4291 2.1908 7 8 3.5677 -1.8864 3.1423 8 6 5.6357 -1.5340 2.1324 9 6 6.4731 -1.0593 1.0954 10 7 7.7067 -1.3370 1.4095 11 7 7.7302 -2.0032 2.6393 12 6 8.9295 -2.4865 3.3281 13 6 6.4632 -2.1253 3.0844 14 7 6.0617 -2.7230 4.2617 15 7 2.0184 -0.6906 -1.1961 16 6 2.1492 -0.0075 -2.3758 17 1 1.8926 1.0404 -2.4241 18 6 2.6114 -0.6621 -3.5092 19 7 2.9236 -1.9393 -3.4503 20 14 2.7905 0.2699 -5.1181 21 1 3.7466 1.3916 -4.9367 22 1 3.2994 -0.6485 -6.1682 23 1 1.4686 0.8078 -5.5285 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7515 -0.1582 2.1370 28 1 1.6053 -1.7197 1.2953 29 1 3.9824 -0.4622 0.4320 30 1 6.1464 -0.5520 0.1996 31 1 9.1429 -3.5078 3.0126 32 1 9.7749 -1.8451 3.0790 33 1 8.7630 -2.4662 4.4051 34 1 5.1198 -2.7585 4.4910 35 1 6.7213 -3.1075 4.8600 36 1 2.2491 -1.6318 -1.1525 37 1 3.2462 -2.3968 -4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731587744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:41 Heat of formation + Delta-G solvation = 21.557923 kcal Electronic energy + Delta-G solvation = -20205.598277 eV Core-core repulsion = 17018.581827 eV Total energy + Delta-G solvation = -3187.016450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.28930 -40.06708 -37.77035 -35.96385 -34.95459 -34.02421 -33.39797 -30.60200 -29.74556 -28.14280 -26.71261 -25.54450 -23.42762 -21.86679 -21.52779 -20.90222 -19.35364 -18.85614 -17.77962 -17.13679 -16.89343 -16.73200 -16.50367 -15.93116 -15.63656 -15.22470 -15.09229 -14.48145 -14.24930 -13.82725 -13.64444 -13.56798 -13.48631 -13.23160 -13.01075 -12.70114 -12.44862 -12.23317 -12.18594 -11.88310 -11.63616 -11.58217 -10.93054 -10.76778 -10.04710 -9.81709 -8.96217 -8.82407 -7.85785 -5.14488 0.85153 1.24455 1.32844 1.53687 1.54961 1.60848 2.53471 2.63323 2.64480 2.79131 3.48225 3.58287 3.96468 4.04713 4.08820 4.24335 4.39865 4.48070 4.52456 4.62054 4.67603 4.71831 4.82401 4.97902 5.12157 5.32369 5.40263 5.50920 5.58554 5.61772 5.75262 6.28452 6.34533 6.52869 6.75915 6.95062 7.42053 7.46017 8.15453 8.40026 9.36784 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.005047 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.178950 B = 5546.229268 C = 6709.519961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.059 0.941 4 C 0.128 3.872 5 N -0.711 5.711 6 C 0.597 3.403 7 O -0.604 6.604 8 C -0.396 4.396 9 C 0.112 3.888 10 N -0.329 5.329 11 N -0.400 5.400 12 C 0.090 3.910 13 C 0.432 3.568 14 N -0.814 5.814 15 N -0.731 5.731 16 C -0.234 4.234 17 H 0.078 0.922 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.966 3.034 21 H -0.277 1.277 22 H -0.302 1.302 23 H -0.282 1.282 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.407 0.593 30 H 0.193 0.807 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.428 0.572 35 H 0.416 0.584 36 H 0.372 0.628 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 0.417 17.018 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.077 0.923 4 C 0.004 3.996 5 N -0.361 5.361 6 C 0.389 3.611 7 O -0.488 6.488 8 C -0.416 4.416 9 C -0.077 4.077 10 N -0.147 5.147 11 N -0.189 5.189 12 C -0.049 4.049 13 C 0.195 3.805 14 N -0.365 5.365 15 N -0.372 5.372 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.262 4.262 19 N -0.618 5.618 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.229 1.229 23 H -0.209 1.209 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.242 0.758 30 H 0.210 0.790 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.264 0.736 35 H 0.248 0.752 36 H 0.204 0.796 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.004 0.320 17.223 19.920 hybrid contribution -0.642 -0.225 -1.083 1.279 sum 9.362 0.095 16.140 18.659 Atomic orbital electron populations 1.22231 0.96808 1.01105 1.01308 1.20693 0.93556 0.95635 0.85133 0.92310 1.21514 0.79748 1.00206 0.98179 1.45644 1.07782 1.59314 1.23321 1.17185 0.85940 0.76441 0.81570 1.90586 1.70650 1.52285 1.35308 1.19382 0.93265 1.26669 1.02252 1.23994 0.89602 0.95969 0.98158 1.77055 1.20718 1.19235 0.97731 1.48476 1.04654 1.48476 1.17266 1.22226 0.84125 1.01273 0.97290 1.18074 0.85342 0.89662 0.87443 1.41689 1.13306 1.63050 1.18466 1.42594 1.78307 1.10293 1.06012 1.19545 1.34732 0.94163 0.88114 0.90407 1.25423 1.03146 0.96633 1.01007 1.69817 1.52626 1.10132 1.29204 0.85328 0.77755 0.77372 0.79960 1.20276 1.22883 1.20888 0.93951 0.90782 0.93734 0.90202 0.93302 0.75758 0.78982 0.89519 0.88068 0.87061 0.73649 0.75184 0.79563 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.49 71.98 0.68 -4.50 16 2 C 0.16 5.89 3.05 44.99 0.14 6.03 16 3 H 0.06 2.15 8.08 -2.38 -0.02 2.13 16 4 C 0.13 4.43 5.23 86.38 0.45 4.88 16 5 N -0.71 -25.23 5.38 -466.98 -2.51 -27.74 16 6 C 0.60 21.43 7.79 86.47 0.67 22.11 16 7 O -0.60 -23.06 15.14 -4.30 -0.07 -23.13 16 8 C -0.40 -12.80 6.15 -19.99 -0.12 -12.93 16 9 C 0.11 3.56 11.49 85.72 0.99 4.54 16 10 N -0.33 -9.94 12.47 -56.22 -0.70 -10.65 16 11 N -0.40 -9.52 4.00 -365.31 -1.46 -10.98 16 12 C 0.09 1.09 11.25 127.77 1.44 2.53 16 13 C 0.43 11.31 7.98 132.70 1.06 12.37 16 14 N -0.81 -15.32 9.02 -54.57 -0.49 -15.81 16 15 N -0.73 -34.74 4.56 -322.94 -1.47 -36.21 16 16 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 17 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 19 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 20 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.41 14.76 7.08 -92.71 -0.66 14.10 16 30 H 0.19 5.72 7.50 -2.91 -0.02 5.70 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 0.60 7.46 -2.39 -0.02 0.58 16 34 H 0.43 9.36 7.01 -92.71 -0.65 8.71 16 35 H 0.42 4.23 8.04 -92.71 -0.75 3.49 16 36 H 0.37 19.63 7.80 -92.71 -0.72 18.90 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -70.55 318.47 0.57 -69.98 By element: Atomic # 1 Polarization: 46.50 SS G_CDS: -1.64 Total: 44.86 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.61 Total: 20.18 kcal Atomic # 7 Polarization: -152.78 SS G_CDS: -6.36 Total: -159.13 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.13 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.55 0.57 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731587744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.538 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds