Wall clock time and date at job start Mon Mar 30 2020 00:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47705 * 2 1 4 4 C 1.52997 * 109.46743 * 239.99461 * 2 1 3 5 5 C 1.53003 * 109.46776 * 175.00586 * 4 2 1 6 6 N 1.46505 * 109.47172 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99824 * 5.13046 * 7 6 5 9 9 C 1.47236 * 119.99551 * 185.12889 * 7 6 5 10 10 C 1.37001 * 127.19356 * 354.39676 * 9 7 6 11 11 N 1.33316 * 106.37230 * 180.24225 * 10 9 7 12 12 N 1.28512 * 109.44185 * 359.55435 * 11 10 9 13 13 N 1.28720 * 110.63474 * 0.46297 * 12 11 10 14 14 C 1.46493 * 126.03591 * 179.72150 * 13 12 11 15 15 N 1.46508 * 109.46633 * 119.99733 * 2 1 3 16 16 C 1.36931 * 120.00131 * 274.99603 * 15 2 1 17 17 H 1.08006 * 119.99983 * 0.02562 * 16 15 2 18 18 C 1.38811 * 119.99979 * 180.02562 * 16 15 2 19 19 N 1.31615 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47520 * 59.99658 * 20 18 16 22 22 H 1.48506 * 109.46904 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47168 * 299.99374 * 20 18 16 24 24 H 1.08990 * 109.47792 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46863 * 300.00678 * 1 2 3 26 26 H 1.08999 * 109.47048 * 60.00036 * 1 2 3 27 27 H 1.08994 * 109.47289 * 55.00562 * 4 2 1 28 28 H 1.08998 * 109.47208 * 295.00022 * 4 2 1 29 29 H 1.08994 * 109.47231 * 59.99940 * 5 4 2 30 30 H 1.09004 * 109.47096 * 300.00012 * 5 4 2 31 31 H 0.97004 * 119.99318 * 359.97438 * 6 5 4 32 32 H 1.07999 * 126.81125 * 359.97235 * 10 9 7 33 33 H 1.09003 * 109.46887 * 274.07070 * 14 13 12 34 34 H 1.09000 * 109.47346 * 34.06420 * 14 13 12 35 35 H 1.08992 * 109.47452 * 154.07138 * 14 13 12 36 36 H 0.97000 * 119.99804 * 95.00383 * 15 2 1 37 37 H 0.97001 * 119.99587 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0531 -1.3037 -2.5100 7 6 5.3740 -1.3400 -2.7752 8 8 6.1675 -0.8819 -1.9755 9 6 5.8562 -1.9343 -4.0330 10 6 5.1107 -2.5829 -4.9818 11 7 5.9611 -2.9540 -5.9390 12 7 7.1471 -2.5660 -5.6315 13 7 7.1447 -1.9535 -4.4994 14 6 8.3129 -1.3785 -3.8282 15 7 2.0183 -0.6906 1.1963 16 6 2.1491 -0.0075 2.3758 17 1 1.8919 1.0404 2.4243 18 6 2.6122 -0.6617 3.5091 19 7 2.9250 -1.9388 3.4500 20 14 2.7899 0.2701 5.1183 21 1 1.4673 0.8061 5.5288 22 1 3.2989 -0.6483 6.1685 23 1 3.7445 1.3931 4.9373 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2619 -2.1369 28 1 1.7515 -1.7716 -1.2054 29 1 3.9993 -1.0730 -0.4259 30 1 3.8532 0.4367 -1.3573 31 1 3.4256 -1.7353 -3.1109 32 1 4.0459 -2.7623 -4.9569 33 1 8.8064 -2.1482 -3.2347 34 1 9.0080 -0.9939 -4.5744 35 1 7.9937 -0.5658 -3.1759 36 1 2.2490 -1.6318 1.1528 37 1 3.2483 -2.3960 4.2421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731724518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:12 Heat of formation + Delta-G solvation = 67.975278 kcal Electronic energy + Delta-G solvation = -19839.804439 eV Core-core repulsion = 16654.800796 eV Total energy + Delta-G solvation = -3185.003643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.49762 -39.56160 -36.71351 -35.10326 -34.36337 -32.46677 -31.64315 -29.31747 -28.36053 -28.01257 -24.61559 -23.70407 -22.95157 -21.90230 -20.82210 -19.82130 -18.26740 -17.26115 -17.02212 -16.79872 -15.89302 -15.43333 -14.79942 -14.66620 -14.23918 -13.95391 -13.56189 -13.52973 -13.23260 -13.06013 -12.56569 -12.28986 -12.09084 -11.61094 -11.37251 -11.19246 -10.97424 -10.78518 -10.69714 -10.45640 -10.37768 -10.20373 -9.94751 -9.74029 -9.66679 -9.06760 -8.91665 -6.98815 -5.77784 -3.06839 0.74051 1.88506 2.08689 2.96092 3.01952 3.43689 3.48443 3.49083 4.09183 4.30384 4.51925 4.58376 4.76198 4.82082 5.15106 5.17886 5.31410 5.38369 5.51114 5.61092 5.68642 5.80045 5.99006 6.09719 6.12860 6.22508 6.30391 6.35530 6.51617 6.62821 6.81490 7.01881 7.31377 7.68847 7.95415 8.11947 8.40460 9.51951 10.07936 10.42418 11.44676 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.003854 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.405275 B = 7263.033644 C = 8024.829960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.123 3.877 6 N -0.708 5.708 7 C 0.589 3.411 8 O -0.530 6.530 9 C -0.064 4.064 10 C -0.002 4.002 11 N -0.275 5.275 12 N -0.064 5.064 13 N -0.255 5.255 14 C 0.075 3.925 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.400 0.600 32 H 0.199 0.801 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.383 0.617 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 1.079 -16.435 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.001 3.999 6 N -0.358 5.358 7 C 0.372 3.628 8 O -0.406 6.406 9 C -0.199 4.199 10 C -0.163 4.163 11 N -0.137 5.137 12 N -0.045 5.045 13 N -0.051 5.051 14 C -0.066 4.066 15 N -0.366 5.366 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.215 0.785 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.217 0.783 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.256 1.088 -16.851 17.685 hybrid contribution -0.730 0.273 1.619 1.797 sum 4.526 1.361 -15.232 15.949 Atomic orbital electron populations 1.22426 0.99039 1.00905 1.00028 1.20147 0.91963 0.95558 0.85913 0.93234 1.22084 0.93422 1.02123 0.99616 1.21597 0.94804 0.97090 0.86437 1.45806 1.05853 1.56310 1.27873 1.16677 0.83391 0.79275 0.83448 1.90839 1.54583 1.47521 1.47691 1.22100 0.86008 1.10992 1.00789 1.23890 1.01521 0.99945 0.90903 1.74879 0.95544 1.19165 1.24149 1.78268 1.17576 1.10002 0.98688 1.47650 1.08104 1.35236 1.14153 1.22597 0.84410 1.01186 0.98391 1.42452 1.78140 1.10654 1.05356 1.19172 1.36761 0.93850 0.87383 0.91248 1.24717 1.02053 0.95931 0.98023 1.69640 1.50755 1.08657 1.29006 0.86301 0.77746 0.78663 0.83665 1.21333 1.21742 1.21249 0.93471 0.92690 0.94524 0.91664 0.91336 0.89113 0.91331 0.76511 0.78454 0.88457 0.88060 0.86337 0.78273 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.17 3.12 2.89 -67.93 -0.20 2.93 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.82 4.87 -26.73 -0.13 -1.95 16 5 C 0.12 1.81 5.57 -4.04 -0.02 1.78 16 6 N -0.71 -8.30 5.55 -61.44 -0.34 -8.64 16 7 C 0.59 7.94 7.79 -12.61 -0.10 7.84 16 8 O -0.53 -8.91 14.85 5.27 0.08 -8.83 16 9 C -0.06 -0.77 6.98 -82.33 -0.57 -1.34 16 10 C 0.00 -0.02 11.54 -17.36 -0.20 -0.22 16 11 N -0.27 -3.58 12.35 30.47 0.38 -3.20 16 12 N -0.06 -0.84 13.14 60.35 0.79 -0.05 16 13 N -0.26 -3.00 3.79 -64.13 -0.24 -3.25 16 14 C 0.07 0.63 10.98 59.84 0.66 1.29 16 15 N -0.72 -16.97 4.57 -53.42 -0.24 -17.21 16 16 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 17 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 20 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.71 7.75 -51.93 -0.40 1.31 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.40 3.31 7.51 -40.82 -0.31 3.01 16 32 H 0.20 1.26 7.56 -52.49 -0.40 0.86 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.12 1.12 6.36 -51.93 -0.33 0.79 16 36 H 0.38 9.61 7.80 -40.82 -0.32 9.29 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -33.28 320.05 -4.62 -37.90 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.10 Total: 7.29 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.46 Total: 0.99 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 1.07 Total: -59.27 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.28 -4.62 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731724518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.870 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds