Wall clock time and date at job start Mon Mar 30 2020 00:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47705 * 2 1 4 4 C 1.52997 * 109.46743 * 239.99461 * 2 1 3 5 5 C 1.53003 * 109.46776 * 175.00586 * 4 2 1 6 6 N 1.46505 * 109.47172 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99824 * 5.13046 * 7 6 5 9 9 C 1.47236 * 119.99551 * 185.12889 * 7 6 5 10 10 C 1.37001 * 127.19356 * 354.39676 * 9 7 6 11 11 N 1.33316 * 106.37230 * 180.24225 * 10 9 7 12 12 N 1.28512 * 109.44185 * 359.55435 * 11 10 9 13 13 N 1.28720 * 110.63474 * 0.46297 * 12 11 10 14 14 C 1.46493 * 126.03591 * 179.72150 * 13 12 11 15 15 N 1.46508 * 109.46633 * 119.99733 * 2 1 3 16 16 C 1.36931 * 120.00131 * 274.99603 * 15 2 1 17 17 H 1.08006 * 119.99983 * 0.02562 * 16 15 2 18 18 C 1.38811 * 119.99979 * 180.02562 * 16 15 2 19 19 N 1.31615 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99803 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47520 * 59.99658 * 20 18 16 22 22 H 1.48506 * 109.46904 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47168 * 299.99374 * 20 18 16 24 24 H 1.08990 * 109.47792 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46863 * 300.00678 * 1 2 3 26 26 H 1.08999 * 109.47048 * 60.00036 * 1 2 3 27 27 H 1.08994 * 109.47289 * 55.00562 * 4 2 1 28 28 H 1.08998 * 109.47208 * 295.00022 * 4 2 1 29 29 H 1.08994 * 109.47231 * 59.99940 * 5 4 2 30 30 H 1.09004 * 109.47096 * 300.00012 * 5 4 2 31 31 H 0.97004 * 119.99318 * 359.97438 * 6 5 4 32 32 H 1.07999 * 126.81125 * 359.97235 * 10 9 7 33 33 H 1.09003 * 109.46887 * 274.07070 * 14 13 12 34 34 H 1.09000 * 109.47346 * 34.06420 * 14 13 12 35 35 H 1.08992 * 109.47452 * 154.07138 * 14 13 12 36 36 H 0.97000 * 119.99804 * 95.00383 * 15 2 1 37 37 H 0.97001 * 119.99587 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0531 -1.3037 -2.5100 7 6 5.3740 -1.3400 -2.7752 8 8 6.1675 -0.8819 -1.9755 9 6 5.8562 -1.9343 -4.0330 10 6 5.1107 -2.5829 -4.9818 11 7 5.9611 -2.9540 -5.9390 12 7 7.1471 -2.5660 -5.6315 13 7 7.1447 -1.9535 -4.4994 14 6 8.3129 -1.3785 -3.8282 15 7 2.0183 -0.6906 1.1963 16 6 2.1491 -0.0075 2.3758 17 1 1.8919 1.0404 2.4243 18 6 2.6122 -0.6617 3.5091 19 7 2.9250 -1.9388 3.4500 20 14 2.7899 0.2701 5.1183 21 1 1.4673 0.8061 5.5288 22 1 3.2989 -0.6483 6.1685 23 1 3.7445 1.3931 4.9373 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2619 -2.1369 28 1 1.7515 -1.7716 -1.2054 29 1 3.9993 -1.0730 -0.4259 30 1 3.8532 0.4367 -1.3573 31 1 3.4256 -1.7353 -3.1109 32 1 4.0459 -2.7623 -4.9569 33 1 8.8064 -2.1482 -3.2347 34 1 9.0080 -0.9939 -4.5744 35 1 7.9937 -0.5658 -3.1759 36 1 2.2490 -1.6318 1.1528 37 1 3.2483 -2.3960 4.2421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731724518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:12 Heat of formation + Delta-G solvation = 42.223556 kcal Electronic energy + Delta-G solvation = -19840.921117 eV Core-core repulsion = 16654.800796 eV Total energy + Delta-G solvation = -3186.120321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.39955 -40.67386 -38.13644 -36.20494 -35.47455 -34.19316 -32.73805 -30.91364 -29.58536 -28.96321 -25.98896 -25.29485 -24.00512 -22.94874 -21.93888 -21.16472 -19.40367 -19.02738 -17.92351 -17.76943 -17.02151 -16.82988 -16.31016 -15.65627 -15.58842 -15.30193 -15.14462 -14.48131 -14.28832 -14.12404 -13.90835 -13.54548 -13.24381 -13.19789 -12.77363 -12.60166 -12.32580 -12.26428 -12.20515 -12.09467 -11.65224 -11.56552 -11.32306 -11.22907 -10.90192 -10.68772 -10.15620 -8.94536 -7.90115 -5.16287 -0.18784 1.04434 1.17851 1.48429 1.50382 1.55999 1.94850 2.02695 2.59488 3.27407 3.39901 3.44482 3.69874 3.95612 4.00002 4.03141 4.18364 4.25777 4.40871 4.50171 4.61942 4.70868 4.81919 4.91312 4.92209 5.06516 5.12469 5.22712 5.27384 5.37054 5.44844 5.57540 5.66111 6.33086 6.33961 6.98281 7.20466 7.39549 8.18340 8.38891 9.33129 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.003854 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.405275 B = 7263.033644 C = 8024.829960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.045 0.955 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.690 5.690 7 C 0.591 3.409 8 O -0.570 6.570 9 C -0.080 4.080 10 C 0.017 3.983 11 N -0.300 5.300 12 N -0.078 5.078 13 N -0.254 5.254 14 C 0.068 3.932 15 N -0.735 5.735 16 C -0.233 4.233 17 H 0.074 0.926 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.964 3.036 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.281 1.281 24 H 0.044 0.956 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.421 0.579 32 H 0.239 0.761 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.372 0.628 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 1.697 -18.199 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.063 0.937 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.342 5.342 7 C 0.375 3.625 8 O -0.449 6.449 9 C -0.214 4.214 10 C -0.144 4.144 11 N -0.161 5.161 12 N -0.059 5.059 13 N -0.052 5.052 14 C -0.071 4.071 15 N -0.376 5.376 16 C -0.365 4.365 17 H 0.092 0.908 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.794 3.206 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.207 1.207 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.259 0.741 32 H 0.255 0.745 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.204 0.796 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.081 1.731 -18.685 19.204 hybrid contribution -0.391 0.133 2.076 2.117 sum 3.690 1.865 -16.609 17.115 Atomic orbital electron populations 1.22275 0.97303 1.01032 1.00826 1.20463 0.93036 0.95330 0.85640 0.93713 1.21943 0.92228 1.02409 0.99049 1.21249 0.95513 0.96373 0.85782 1.45521 1.05781 1.55744 1.27141 1.16867 0.83464 0.78618 0.83516 1.90827 1.55678 1.49339 1.49099 1.21982 0.86582 1.12253 1.00621 1.24554 1.02958 0.97732 0.89185 1.74873 0.95949 1.20125 1.25197 1.78238 1.17960 1.10555 0.99158 1.47938 1.08793 1.34584 1.13844 1.22808 0.84091 1.01123 0.99077 1.42659 1.78376 1.10272 1.06302 1.19564 1.34331 0.94104 0.88537 0.90816 1.25434 1.03381 0.96784 1.01166 1.69791 1.52942 1.10114 1.29207 0.85353 0.77870 0.77366 0.80057 1.20474 1.22584 1.20744 0.93659 0.95091 0.90512 0.87214 0.90685 0.93814 0.92014 0.74072 0.74465 0.87536 0.85444 0.87397 0.79582 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.49 71.98 0.68 -4.01 16 2 C 0.16 5.58 2.89 44.99 0.13 5.71 16 3 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 4 C -0.12 -2.88 4.87 30.59 0.15 -2.73 16 5 C 0.13 3.81 5.57 86.38 0.48 4.29 16 6 N -0.69 -14.83 5.55 -466.56 -2.59 -17.41 16 7 C 0.59 15.40 7.79 86.61 0.67 16.08 16 8 O -0.57 -19.43 14.85 -4.07 -0.06 -19.49 16 9 C -0.08 -1.78 6.98 40.41 0.28 -1.50 16 10 C 0.02 0.31 11.54 84.18 0.97 1.28 16 11 N -0.30 -7.26 12.35 -57.51 -0.71 -7.97 16 12 N -0.08 -1.95 13.14 37.02 0.49 -1.46 16 13 N -0.25 -5.73 3.79 -356.79 -1.35 -7.08 16 14 C 0.07 1.12 10.98 127.77 1.40 2.53 16 15 N -0.74 -34.52 4.57 -322.93 -1.48 -36.00 16 16 C -0.23 -12.54 9.93 84.03 0.83 -11.70 16 17 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 18 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 19 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 20 Si 0.96 46.06 29.55 68.60 2.03 48.09 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.68 7.75 -2.39 -0.02 1.66 16 30 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.42 5.46 7.51 -92.71 -0.70 4.76 16 32 H 0.24 2.01 7.56 -2.91 -0.02 1.98 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 2.05 6.36 -2.39 -0.02 2.04 16 36 H 0.37 18.96 7.80 -92.71 -0.72 18.24 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -74.06 320.05 2.36 -71.70 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -0.32 Total: 22.13 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 6.08 Total: 6.12 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -5.36 Total: -128.54 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.06 Total: -19.49 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.06 2.36 -71.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731724518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.919 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds