Wall clock time and date at job start Mon Mar 30 2020 00:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21589 * 120.00004 * 359.97438 * 7 6 5 9 9 C 1.47525 * 120.00061 * 179.97438 * 7 6 5 10 10 C 1.36594 * 125.76746 * 179.71244 * 9 7 6 11 11 N 1.34821 * 106.83665 * 179.89721 * 10 9 7 12 12 C 1.46496 * 126.59262 * 180.10907 * 11 10 9 13 13 N 1.40215 * 106.81186 * 0.35939 * 11 10 9 14 14 N 1.28764 * 108.36381 * 359.76868 * 13 11 10 15 15 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 16 16 C 1.36936 * 120.00314 * 274.99849 * 15 3 2 17 17 H 1.08001 * 120.00159 * 0.02562 * 16 15 3 18 18 C 1.38811 * 119.99842 * 180.02562 * 16 15 3 19 19 N 1.31624 * 119.99540 * 179.72505 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 26 26 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 27 27 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 28 28 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 29 29 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 30 30 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 31 31 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 32 32 H 1.07992 * 126.58143 * 0.03998 * 10 9 7 33 33 H 1.08994 * 109.47258 * 270.27290 * 12 11 10 34 34 H 1.08994 * 109.47583 * 30.27599 * 12 11 10 35 35 H 1.09008 * 109.47207 * 150.27547 * 12 11 10 36 36 H 0.97000 * 120.00040 * 94.99981 * 15 3 2 37 37 H 0.96999 * 119.99889 * 180.27497 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1654 2.1463 -0.2589 9 6 5.8872 4.4453 0.0332 10 6 7.1974 4.8271 -0.0253 11 7 7.2209 6.1667 0.1249 12 6 8.4085 7.0245 0.1278 13 7 5.8906 6.5804 0.2837 14 7 5.1328 5.5411 0.2243 15 7 1.6524 2.0975 1.2518 16 6 0.4156 2.6734 1.3688 17 1 -0.2743 2.6446 0.5383 18 6 0.0486 3.2944 2.5547 19 7 -1.1382 3.8528 2.6653 20 14 1.2421 3.3451 3.9909 21 1 1.0351 2.1507 4.8488 22 1 2.6352 3.3499 3.4768 23 1 1.0047 4.5748 4.7887 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8935 -0.5138 0.8900 29 1 3.9954 0.8312 0.6659 30 1 3.8499 1.0377 -1.0961 31 1 3.4409 3.5484 0.1308 32 1 8.0505 4.1803 -0.1671 33 1 8.7869 7.1177 1.1457 34 1 9.1771 6.5830 -0.5065 35 1 8.1451 8.0110 -0.2537 36 1 2.2718 2.1231 1.9978 37 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732196110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:03 Heat of formation + Delta-G solvation = 71.124827 kcal Electronic energy + Delta-G solvation = -20213.278169 eV Core-core repulsion = 17028.411101 eV Total energy + Delta-G solvation = -3184.867068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.23719 -39.18630 -36.80122 -34.82763 -33.71359 -32.28232 -31.08014 -30.20315 -28.60232 -27.59063 -24.23308 -22.94273 -22.36059 -22.02100 -20.30572 -19.97245 -18.27691 -17.37199 -16.37877 -16.12643 -15.78202 -15.42708 -14.68954 -14.56585 -14.13800 -13.91033 -13.52546 -13.41147 -13.13364 -12.81804 -12.72558 -12.38827 -12.19726 -11.52333 -11.30145 -11.10497 -10.92051 -10.67308 -10.52115 -10.35159 -10.26150 -9.98333 -9.89893 -9.42634 -9.38678 -8.91356 -8.71157 -7.27458 -5.74499 -3.10120 1.03384 1.75126 1.90360 3.38517 3.41725 3.44802 3.45967 3.50209 4.16792 4.19329 4.62570 4.62866 4.69035 4.89745 4.93640 5.23619 5.26035 5.34400 5.51170 5.72384 5.82847 5.93133 5.95131 6.09116 6.17417 6.32133 6.51242 6.57421 6.62440 6.80623 6.98568 7.34017 7.71466 7.99347 8.01070 8.40769 8.43944 9.21787 9.94476 10.13309 11.43258 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.005640 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.817563 B = 4963.066658 C = 6067.566762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.111 3.889 6 N -0.698 5.698 7 C 0.600 3.400 8 O -0.553 6.553 9 C -0.097 4.097 10 C 0.088 3.912 11 N -0.369 5.369 12 C 0.089 3.911 13 N -0.066 5.066 14 N -0.194 5.194 15 N -0.746 5.746 16 C -0.241 4.241 17 H 0.095 0.905 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.879 3.121 21 H -0.286 1.286 22 H -0.277 1.277 23 H -0.292 1.292 24 H 0.032 0.968 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.419 0.581 32 H 0.204 0.796 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.362 0.638 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.212 1.656 -6.798 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.013 4.013 6 N -0.349 5.349 7 C 0.383 3.617 8 O -0.431 6.431 9 C -0.237 4.237 10 C -0.069 4.069 11 N -0.154 5.154 12 C -0.052 4.052 13 N -0.046 5.046 14 N -0.068 5.068 15 N -0.390 5.390 16 C -0.370 4.370 17 H 0.113 0.887 18 C -0.187 4.187 19 N -0.579 5.579 20 Si 0.710 3.290 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.219 1.219 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.256 0.744 32 H 0.221 0.779 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.601 2.331 -6.747 19.924 hybrid contribution 1.321 -0.259 1.140 1.764 sum 19.922 2.072 -5.607 20.800 Atomic orbital electron populations 1.21783 0.95210 0.99662 1.03838 1.22036 0.97363 0.97779 1.00090 1.20554 0.89707 0.93053 0.90913 0.91853 1.21800 0.95749 0.82117 1.01637 1.45850 1.06775 1.11321 1.70959 1.16760 0.82885 0.85105 0.76926 1.90765 1.56393 1.44350 1.51620 1.21586 0.90657 0.95083 1.16360 1.23325 1.00028 0.85081 0.98427 1.50418 1.09489 1.06283 1.49180 1.22159 0.83075 0.95442 1.04560 1.82063 0.82743 1.17421 1.22406 1.74749 1.26354 0.96553 1.09160 1.42824 1.16835 1.67648 1.11676 1.19044 0.90472 1.27713 0.99786 0.88717 1.24629 0.96317 1.00225 0.97540 1.69691 1.19514 1.41861 1.26805 0.86631 0.81379 0.77166 0.83857 1.21307 1.20266 1.21890 0.94895 0.89312 0.93866 0.93529 0.92643 0.91592 0.91121 0.74354 0.77897 0.89327 0.88506 0.88110 0.80496 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.18 37.16 0.34 -2.34 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.17 3.05 2.59 -67.93 -0.18 2.88 16 4 H 0.06 1.19 8.08 -51.93 -0.42 0.78 16 5 C 0.11 1.83 5.23 -4.05 -0.02 1.81 16 6 N -0.70 -12.11 5.38 -61.36 -0.33 -12.44 16 7 C 0.60 10.14 7.82 -12.47 -0.10 10.04 16 8 O -0.55 -10.01 16.86 5.29 0.09 -9.92 16 9 C -0.10 -1.49 6.99 -83.55 -0.58 -2.07 16 10 C 0.09 0.98 11.31 -16.83 -0.19 0.79 16 11 N -0.37 -3.82 4.03 -67.86 -0.27 -4.10 16 12 C 0.09 0.39 11.51 59.84 0.69 1.08 16 13 N -0.07 -0.98 13.79 60.35 0.83 -0.15 16 14 N -0.19 -3.30 12.04 32.85 0.40 -2.90 16 15 N -0.75 -16.66 4.31 -53.43 -0.23 -16.89 16 16 C -0.24 -6.39 8.24 -15.06 -0.12 -6.52 16 17 H 0.10 2.69 7.55 -52.49 -0.40 2.29 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 20 Si 0.88 22.26 27.74 -169.99 -4.72 17.55 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.73 6.51 56.52 0.37 -6.36 16 23 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 1.94 5.99 -51.93 -0.31 1.63 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.42 7.80 7.82 -40.82 -0.32 7.48 16 32 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.36 8.26 5.65 -40.82 -0.23 8.03 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -34.13 317.58 -4.16 -38.28 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.07 Total: 10.28 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.41 Total: 3.46 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 1.17 Total: -64.44 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.72 Total: 17.55 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.13 -4.16 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732196110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.408 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds