Wall clock time and date at job start Mon Mar 30 2020 00:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46931 * 2 1 4 4 H 1.09004 * 109.47386 * 304.99947 * 3 2 1 5 5 C 1.53006 * 109.47024 * 185.00212 * 3 2 1 6 6 N 1.46500 * 109.47259 * 184.99921 * 5 3 2 7 7 C 1.34776 * 119.99869 * 179.97438 * 6 5 3 8 8 O 1.21620 * 120.00109 * 354.50218 * 7 6 5 9 9 C 1.47237 * 119.99901 * 174.49184 * 7 6 5 10 10 C 1.37008 * 127.18708 * 4.83192 * 9 7 6 11 11 N 1.33314 * 106.36801 * 180.02562 * 10 9 7 12 12 N 1.28509 * 109.44365 * 359.97438 * 11 10 9 13 13 N 1.28714 * 110.63465 * 359.71853 * 12 11 10 14 14 C 1.46507 * 126.03126 * 180.29640 * 13 12 11 15 15 N 1.46499 * 109.47328 * 65.00415 * 3 2 1 16 16 C 1.36936 * 119.99490 * 274.99624 * 15 3 2 17 17 H 1.08002 * 120.00302 * 359.97438 * 16 15 3 18 18 C 1.38817 * 119.99867 * 179.72255 * 16 15 3 19 19 N 1.31620 * 120.00066 * 180.27514 * 18 16 15 20 20 Si 1.86799 * 119.99592 * 0.28033 * 18 16 15 21 21 H 1.48498 * 109.47652 * 90.00120 * 20 18 16 22 22 H 1.48504 * 109.46824 * 210.00028 * 20 18 16 23 23 H 1.48494 * 109.47281 * 329.99497 * 20 18 16 24 24 H 1.09003 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47326 * 299.99589 * 1 2 3 26 26 H 1.08993 * 109.47397 * 60.00027 * 1 2 3 27 27 H 1.09000 * 109.46692 * 240.00061 * 2 1 3 28 28 H 1.08999 * 109.47085 * 120.00268 * 2 1 3 29 29 H 1.09004 * 109.46905 * 305.00332 * 5 3 2 30 30 H 1.08998 * 109.46948 * 64.99421 * 5 3 2 31 31 H 0.96996 * 119.99819 * 0.02562 * 6 5 3 32 32 H 1.07999 * 126.81301 * 0.02562 * 10 9 7 33 33 H 1.09001 * 109.47110 * 271.33738 * 14 13 12 34 34 H 1.08998 * 109.47519 * 31.34061 * 14 13 12 35 35 H 1.09001 * 109.46726 * 151.34265 * 14 13 12 36 36 H 0.97001 * 120.00407 * 95.00007 * 15 3 2 37 37 H 0.96997 * 119.99626 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3857 3.0629 -0.0859 8 8 6.1730 2.1386 -0.1569 9 6 5.8775 4.4507 -0.0875 10 6 5.1373 5.5917 0.0771 11 7 5.9949 6.6098 0.0034 12 7 7.1814 6.1563 -0.1912 13 7 7.1720 4.8705 -0.2478 14 6 8.3388 4.0082 -0.4517 15 7 1.6524 2.0974 1.2518 16 6 0.4156 2.6734 1.3688 17 1 -0.2740 2.6452 0.5381 18 6 0.0462 3.2890 2.5569 19 7 -1.1446 3.8379 2.6711 20 14 1.2393 3.3385 3.9933 21 1 2.0702 4.5661 3.9048 22 1 0.4785 3.3466 5.2686 23 1 2.1176 2.1420 3.9487 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9954 0.8310 0.6658 30 1 3.8498 1.0376 -1.0961 31 1 3.4410 3.5482 0.1315 32 1 4.0708 5.6540 0.2352 33 1 8.4985 3.8595 -1.5196 34 1 9.2194 4.4791 -0.0147 35 1 8.1666 3.0445 0.0276 36 1 2.2720 2.1231 1.9978 37 1 -1.4025 4.2684 3.5012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732197988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:07 Heat of formation + Delta-G solvation = 72.128874 kcal Electronic energy + Delta-G solvation = -20484.500322 eV Core-core repulsion = 17299.676792 eV Total energy + Delta-G solvation = -3184.823529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.37309 -39.56249 -37.02490 -34.91000 -33.97488 -32.48209 -31.54159 -30.33272 -28.46328 -27.97890 -24.54601 -23.32015 -22.63656 -21.87713 -20.61847 -20.10450 -18.38713 -17.47983 -16.91843 -16.70246 -15.86583 -15.58938 -14.76525 -14.52902 -14.30664 -13.98178 -13.51118 -13.31167 -13.17025 -13.03185 -12.91655 -12.56803 -12.16654 -11.65541 -11.27122 -11.22290 -11.03076 -10.82822 -10.48187 -10.38214 -10.33479 -10.17479 -10.06687 -9.62439 -9.55783 -9.07577 -9.00390 -7.42823 -5.87569 -3.24722 0.83407 1.97464 2.22504 3.01926 3.11608 3.29798 3.32994 3.40243 4.24098 4.41099 4.49042 4.64279 4.82586 4.93697 5.07298 5.14333 5.18219 5.38012 5.46924 5.63750 5.77763 5.81044 5.88108 5.90964 6.17315 6.23795 6.29431 6.41719 6.49868 6.60062 6.85261 7.23069 7.43471 7.86959 8.01406 8.24503 8.30303 9.07572 9.79845 9.98175 11.29797 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.005894 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.245076 B = 4749.143910 C = 5745.222883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.167 3.833 4 H 0.066 0.934 5 C 0.113 3.887 6 N -0.696 5.696 7 C 0.593 3.407 8 O -0.548 6.548 9 C -0.070 4.070 10 C 0.007 3.993 11 N -0.273 5.273 12 N -0.065 5.065 13 N -0.258 5.258 14 C 0.076 3.924 15 N -0.747 5.747 16 C -0.246 4.246 17 H 0.096 0.904 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.877 3.123 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.278 1.278 24 H 0.033 0.967 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.414 0.586 32 H 0.203 0.797 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.362 0.638 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.114 -3.230 -7.104 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.084 0.916 5 C -0.011 4.011 6 N -0.347 5.347 7 C 0.376 3.624 8 O -0.426 6.426 9 C -0.204 4.204 10 C -0.154 4.154 11 N -0.135 5.135 12 N -0.046 5.046 13 N -0.055 5.055 14 C -0.065 4.065 15 N -0.391 5.391 16 C -0.376 4.376 17 H 0.113 0.887 18 C -0.186 4.186 19 N -0.575 5.575 20 Si 0.707 3.293 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.204 1.204 24 H 0.052 0.948 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.252 0.748 32 H 0.220 0.780 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.195 0.805 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.312 -2.552 -7.282 17.147 hybrid contribution -0.125 -0.632 1.306 1.456 sum 15.187 -3.184 -5.976 16.628 Atomic orbital electron populations 1.21778 0.95091 0.99787 1.03845 1.22036 0.97475 0.97663 1.00157 1.20567 0.89403 0.93244 0.91023 0.91647 1.21864 0.95942 0.81397 1.01912 1.45720 1.05920 1.11737 1.71324 1.16675 0.83290 0.85140 0.77277 1.90758 1.55331 1.44939 1.51598 1.22006 0.85815 0.97262 1.15289 1.24074 1.01857 0.87143 1.02278 1.74903 0.95314 1.26740 1.16586 1.78251 1.17949 0.90749 1.17643 1.47607 1.07702 1.06275 1.43881 1.22553 0.84412 0.94663 1.04848 1.42852 1.17057 1.67639 1.11531 1.19037 0.90831 1.27856 0.99847 0.88655 1.24652 0.96267 1.00261 0.97402 1.69683 1.19066 1.42013 1.26732 0.86690 0.81062 0.77811 0.83746 1.20951 1.21777 1.20421 0.94817 0.89316 0.93814 0.93510 0.92609 0.91243 0.90907 0.74802 0.78035 0.88826 0.88117 0.86392 0.80506 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.18 37.16 0.34 -2.15 16 2 C -0.13 -2.01 5.61 -26.74 -0.15 -2.16 16 3 C 0.17 2.67 2.59 -67.93 -0.18 2.49 16 4 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 1.56 5.24 -4.04 -0.02 1.54 16 6 N -0.70 -9.62 5.38 -61.44 -0.33 -9.96 16 7 C 0.59 8.43 7.80 -12.60 -0.10 8.34 16 8 O -0.55 -8.57 14.82 5.26 0.08 -8.50 16 9 C -0.07 -0.95 6.98 -82.33 -0.57 -1.53 16 10 C 0.01 0.10 11.55 -17.35 -0.20 -0.10 16 11 N -0.27 -4.23 12.35 30.47 0.38 -3.86 16 12 N -0.07 -0.95 13.14 60.35 0.79 -0.16 16 13 N -0.26 -3.31 3.79 -64.11 -0.24 -3.56 16 14 C 0.08 0.66 11.00 59.85 0.66 1.32 16 15 N -0.75 -14.90 4.31 -53.42 -0.23 -15.13 16 16 C -0.25 -6.01 8.23 -15.06 -0.12 -6.14 16 17 H 0.10 2.52 7.55 -52.49 -0.40 2.12 16 18 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -27.15 13.97 55.49 0.78 -26.37 16 20 Si 0.88 20.65 27.74 -169.99 -4.72 15.93 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.25 6.51 56.52 0.37 -5.88 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 1.82 5.99 -51.93 -0.31 1.51 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.41 5.70 7.17 -40.82 -0.29 5.41 16 32 H 0.20 2.34 7.56 -52.49 -0.40 1.94 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 1.10 6.31 -51.93 -0.33 0.77 16 36 H 0.36 7.39 5.66 -40.82 -0.23 7.16 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -30.68 311.67 -4.17 -34.85 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.93 Total: 10.25 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.44 Total: 1.80 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 1.14 Total: -59.03 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.72 Total: 15.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.68 -4.17 -34.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732197988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.976 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds