Wall clock time and date at job start Mon Mar 30 2020 00:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46931 * 2 1 4 4 H 1.09004 * 109.47386 * 304.99947 * 3 2 1 5 5 C 1.53006 * 109.47024 * 185.00212 * 3 2 1 6 6 N 1.46500 * 109.47259 * 184.99921 * 5 3 2 7 7 C 1.34776 * 119.99869 * 179.97438 * 6 5 3 8 8 O 1.21620 * 120.00109 * 354.50218 * 7 6 5 9 9 C 1.47237 * 119.99901 * 174.49184 * 7 6 5 10 10 C 1.37008 * 127.18708 * 4.83192 * 9 7 6 11 11 N 1.33314 * 106.36801 * 180.02562 * 10 9 7 12 12 N 1.28509 * 109.44365 * 359.97438 * 11 10 9 13 13 N 1.28714 * 110.63465 * 359.71853 * 12 11 10 14 14 C 1.46507 * 126.03126 * 180.29640 * 13 12 11 15 15 N 1.46499 * 109.47328 * 65.00415 * 3 2 1 16 16 C 1.36936 * 119.99490 * 274.99624 * 15 3 2 17 17 H 1.08002 * 120.00302 * 359.97438 * 16 15 3 18 18 C 1.38817 * 119.99867 * 179.72255 * 16 15 3 19 19 N 1.31620 * 120.00066 * 180.27514 * 18 16 15 20 20 Si 1.86799 * 119.99592 * 0.28033 * 18 16 15 21 21 H 1.48498 * 109.47652 * 90.00120 * 20 18 16 22 22 H 1.48504 * 109.46824 * 210.00028 * 20 18 16 23 23 H 1.48494 * 109.47281 * 329.99497 * 20 18 16 24 24 H 1.09003 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47326 * 299.99589 * 1 2 3 26 26 H 1.08993 * 109.47397 * 60.00027 * 1 2 3 27 27 H 1.09000 * 109.46692 * 240.00061 * 2 1 3 28 28 H 1.08999 * 109.47085 * 120.00268 * 2 1 3 29 29 H 1.09004 * 109.46905 * 305.00332 * 5 3 2 30 30 H 1.08998 * 109.46948 * 64.99421 * 5 3 2 31 31 H 0.96996 * 119.99819 * 0.02562 * 6 5 3 32 32 H 1.07999 * 126.81301 * 0.02562 * 10 9 7 33 33 H 1.09001 * 109.47110 * 271.33738 * 14 13 12 34 34 H 1.08998 * 109.47519 * 31.34061 * 14 13 12 35 35 H 1.09001 * 109.46726 * 151.34265 * 14 13 12 36 36 H 0.97001 * 120.00407 * 95.00007 * 15 3 2 37 37 H 0.96997 * 119.99626 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3857 3.0629 -0.0859 8 8 6.1730 2.1386 -0.1569 9 6 5.8775 4.4507 -0.0875 10 6 5.1373 5.5917 0.0771 11 7 5.9949 6.6098 0.0034 12 7 7.1814 6.1563 -0.1912 13 7 7.1720 4.8705 -0.2478 14 6 8.3388 4.0082 -0.4517 15 7 1.6524 2.0974 1.2518 16 6 0.4156 2.6734 1.3688 17 1 -0.2740 2.6452 0.5381 18 6 0.0462 3.2890 2.5569 19 7 -1.1446 3.8379 2.6711 20 14 1.2393 3.3385 3.9933 21 1 2.0702 4.5661 3.9048 22 1 0.4785 3.3466 5.2686 23 1 2.1176 2.1420 3.9487 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9954 0.8310 0.6658 30 1 3.8498 1.0376 -1.0961 31 1 3.4410 3.5482 0.1315 32 1 4.0708 5.6540 0.2352 33 1 8.4985 3.8595 -1.5196 34 1 9.2194 4.4791 -0.0147 35 1 8.1666 3.0445 0.0276 36 1 2.2720 2.1231 1.9978 37 1 -1.4025 4.2684 3.5012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732197988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:07 Heat of formation + Delta-G solvation = 48.889416 kcal Electronic energy + Delta-G solvation = -20485.508060 eV Core-core repulsion = 17299.676792 eV Total energy + Delta-G solvation = -3185.831268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.41545 -40.70704 -38.41313 -35.94982 -35.20939 -34.19534 -32.63936 -32.03512 -29.67491 -28.94062 -25.86272 -24.78460 -23.94250 -22.98342 -21.82873 -21.38878 -19.79742 -18.95832 -17.92359 -17.76711 -17.09092 -16.95009 -16.08572 -15.93408 -15.52765 -15.22222 -14.73942 -14.62002 -14.40965 -14.26913 -14.06274 -13.90476 -13.25681 -13.06145 -12.88678 -12.81883 -12.37153 -12.24400 -12.06663 -11.85297 -11.59285 -11.40214 -11.33522 -11.25188 -10.89627 -10.70072 -10.13643 -9.26170 -7.92309 -5.24115 -0.21175 1.04676 1.14018 1.42482 1.43321 1.50551 1.93125 2.07527 2.54422 3.24299 3.38999 3.41290 3.63757 3.69046 3.89617 3.97851 4.21923 4.35738 4.48258 4.51559 4.59556 4.60818 4.75551 4.85347 4.87838 5.11010 5.12340 5.22993 5.29183 5.36292 5.56118 5.76851 5.91834 6.29922 6.32244 6.90301 7.17224 7.18167 7.91790 8.09216 9.28736 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.005894 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.245076 B = 4749.143910 C = 5745.222883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.166 3.834 4 H 0.065 0.935 5 C 0.122 3.878 6 N -0.695 5.695 7 C 0.599 3.401 8 O -0.560 6.560 9 C -0.077 4.077 10 C 0.006 3.994 11 N -0.302 5.302 12 N -0.076 5.076 13 N -0.250 5.250 14 C 0.067 3.933 15 N -0.747 5.747 16 C -0.202 4.202 17 H 0.071 0.929 18 C -0.057 4.057 19 N -0.983 5.983 20 Si 0.935 3.065 21 H -0.279 1.279 22 H -0.310 1.310 23 H -0.258 1.258 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.415 0.585 32 H 0.217 0.783 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.363 0.637 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.352 -4.645 -8.001 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.058 3.942 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.346 5.346 7 C 0.383 3.617 8 O -0.440 6.440 9 C -0.212 4.212 10 C -0.155 4.155 11 N -0.164 5.164 12 N -0.057 5.057 13 N -0.047 5.047 14 C -0.072 4.072 15 N -0.390 5.390 16 C -0.333 4.333 17 H 0.089 0.911 18 C -0.249 4.249 19 N -0.634 5.634 20 Si 0.765 3.235 21 H -0.206 1.206 22 H -0.238 1.238 23 H -0.183 1.183 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.252 0.748 32 H 0.234 0.766 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.196 0.804 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.620 -4.005 -8.219 19.851 hybrid contribution -0.790 -0.295 1.438 1.667 sum 16.830 -4.301 -6.780 18.647 Atomic orbital electron populations 1.21699 0.96580 1.00352 1.01599 1.21963 0.95956 0.97010 1.01879 1.20746 0.91161 0.93432 0.88884 0.91729 1.21784 0.93755 0.81466 1.03175 1.45703 1.05893 1.11800 1.71209 1.16615 0.83132 0.85063 0.76876 1.90756 1.55605 1.45307 1.52325 1.21989 0.86325 0.96971 1.15908 1.24379 1.02539 0.86888 1.01736 1.74876 0.95921 1.27753 1.17842 1.78192 1.17767 0.91539 1.18158 1.47957 1.08382 1.06106 1.42299 1.22901 0.83889 0.94016 1.06389 1.42846 1.15381 1.67615 1.13192 1.18958 0.91455 1.24736 0.98155 0.91131 1.25252 0.97691 1.01778 1.00170 1.69845 1.21514 1.44966 1.27075 0.85722 0.79193 0.78551 0.80082 1.20584 1.23754 1.18306 0.92960 0.93632 0.93847 0.89969 0.92632 0.91233 0.88644 0.74765 0.76603 0.86845 0.85723 0.86814 0.80386 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.18 71.98 0.66 -3.99 16 2 C -0.13 -3.48 5.61 30.59 0.17 -3.31 16 3 C 0.17 4.85 2.59 44.99 0.12 4.97 16 4 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 2.95 5.24 86.38 0.45 3.41 16 6 N -0.70 -17.37 5.38 -466.55 -2.51 -19.88 16 7 C 0.60 15.54 7.80 86.61 0.68 16.21 16 8 O -0.56 -15.96 14.82 -4.10 -0.06 -16.02 16 9 C -0.08 -1.97 6.98 40.41 0.28 -1.69 16 10 C 0.01 0.15 11.55 84.18 0.97 1.13 16 11 N -0.30 -9.09 12.35 -57.50 -0.71 -9.80 16 12 N -0.08 -2.11 13.14 37.02 0.49 -1.62 16 13 N -0.25 -5.93 3.79 -356.75 -1.35 -7.28 16 14 C 0.07 0.99 11.00 127.77 1.41 2.40 16 15 N -0.75 -28.51 4.31 -322.93 -1.39 -29.90 16 16 C -0.20 -9.85 8.23 84.03 0.69 -9.16 16 17 H 0.07 3.79 7.55 -2.91 -0.02 3.77 16 18 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 19 N -0.98 -59.30 13.97 21.65 0.30 -58.99 16 20 Si 0.93 42.78 27.74 68.60 1.90 44.68 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.31 -15.05 7.11 99.48 0.71 -14.35 16 23 H -0.26 -10.76 6.51 99.48 0.65 -10.11 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.04 1.85 5.99 -2.39 -0.01 1.84 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.41 10.49 7.17 -92.71 -0.66 9.82 16 32 H 0.22 4.73 7.56 -2.91 -0.02 4.71 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.85 6.31 -2.39 -0.02 1.84 16 36 H 0.36 13.95 5.66 -92.71 -0.52 13.42 16 37 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -66.59 311.67 2.42 -64.17 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.15 Total: 27.32 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.90 Total: 7.33 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -5.17 Total: -127.48 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.06 Total: -16.02 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.90 Total: 44.68 kcal Total: -66.59 2.42 -64.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732197988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.061 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds