Wall clock time and date at job start Mon Mar 30 2020 00:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47518 * 2 1 4 4 H 1.08996 * 109.46634 * 305.00215 * 3 2 1 5 5 C 1.52995 * 109.47335 * 185.00018 * 3 2 1 6 6 N 1.46501 * 109.47321 * 184.99996 * 5 3 2 7 7 C 1.34770 * 120.00120 * 179.97438 * 6 5 3 8 8 O 1.21554 * 120.00278 * 359.97438 * 7 6 5 9 9 C 1.47807 * 119.99694 * 180.02562 * 7 6 5 10 10 C 1.40925 * 127.23221 * 179.97438 * 9 7 6 11 11 N 1.31138 * 105.77323 * 179.76872 * 10 9 7 12 12 N 1.28522 * 109.05907 * 0.22671 * 11 10 9 13 13 C 1.46497 * 124.44374 * 180.02562 * 12 11 10 14 14 N 1.28587 * 111.11004 * 359.97438 * 12 11 10 15 15 N 1.46498 * 109.46830 * 64.99754 * 3 2 1 16 16 C 1.36937 * 119.99916 * 275.00026 * 15 3 2 17 17 H 1.07994 * 120.00283 * 0.02562 * 16 15 3 18 18 C 1.38817 * 119.99863 * 180.02562 * 16 15 3 19 19 N 1.31617 * 120.00007 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99921 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47061 * 90.00608 * 20 18 16 22 22 H 1.48502 * 109.46866 * 210.00448 * 20 18 16 23 23 H 1.48497 * 109.46929 * 329.99892 * 20 18 16 24 24 H 1.08996 * 109.47456 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47071 * 300.00466 * 1 2 3 26 26 H 1.09007 * 109.46912 * 59.99807 * 1 2 3 27 27 H 1.08998 * 109.47620 * 239.99576 * 2 1 3 28 28 H 1.09006 * 109.47269 * 119.99790 * 2 1 3 29 29 H 1.08999 * 109.47187 * 64.99769 * 5 3 2 30 30 H 1.09007 * 109.46750 * 304.99676 * 5 3 2 31 31 H 0.97008 * 119.99545 * 0.02562 * 6 5 3 32 32 H 1.08002 * 127.11735 * 0.03765 * 10 9 7 33 33 H 1.09001 * 109.46928 * 89.97424 * 13 12 11 34 34 H 1.08998 * 109.47441 * 209.97511 * 13 12 11 35 35 H 1.09004 * 109.47065 * 329.97986 * 13 12 11 36 36 H 0.96999 * 120.00147 * 95.00912 * 15 3 2 37 37 H 0.97001 * 120.00094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0628 -0.0858 8 8 6.1654 2.1460 -0.2567 9 6 5.8885 4.4474 0.0356 10 6 7.2297 4.8759 -0.0238 11 7 7.1949 6.1782 0.1267 12 7 5.9737 6.5513 0.2723 13 6 5.5490 7.9401 0.4651 14 7 5.1735 5.5459 0.2255 15 7 1.6525 2.0975 1.2518 16 6 0.4157 2.6735 1.3687 17 1 -0.2742 2.6447 0.5383 18 6 0.0486 3.2946 2.5547 19 7 -1.1403 3.8478 2.6673 20 14 1.2416 3.3439 3.9913 21 1 2.0774 4.5678 3.8989 22 1 0.4805 3.3594 5.2664 23 1 2.1150 2.1436 3.9508 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8499 1.0376 -1.0960 30 1 3.9954 0.8311 0.6660 31 1 3.4411 3.5483 0.1316 32 1 8.1049 4.2598 -0.1683 33 1 5.3580 8.3995 -0.5047 34 1 4.6381 7.9618 1.0633 35 1 6.3352 8.4922 0.9802 36 1 2.2719 2.1232 1.9977 37 1 -1.3970 4.2815 3.4961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732214972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:11 Heat of formation + Delta-G solvation = 58.679874 kcal Electronic energy + Delta-G solvation = -20346.605449 eV Core-core repulsion = 17161.198727 eV Total energy + Delta-G solvation = -3185.406722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.72063 -40.64280 -38.39970 -35.37871 -34.80224 -34.21827 -33.64936 -32.06605 -30.00498 -28.73429 -25.89660 -24.77818 -23.59366 -23.11868 -21.76342 -21.28876 -19.74702 -18.78957 -18.05740 -17.90543 -17.10445 -16.90284 -16.13159 -15.87841 -15.74847 -15.29308 -14.72697 -14.63945 -14.41115 -14.16582 -13.80928 -13.68607 -13.09736 -13.04088 -12.89965 -12.85275 -12.38899 -12.12975 -12.09319 -11.88342 -11.61961 -11.57834 -11.42938 -11.33402 -10.92625 -10.53810 -10.08491 -9.28442 -7.95330 -5.26561 0.18562 0.86075 1.24343 1.38485 1.39614 1.45513 2.09256 2.15292 2.51089 2.87429 3.36357 3.58756 3.75058 3.88677 4.00220 4.26540 4.28221 4.34057 4.46311 4.47496 4.58177 4.64833 4.73784 4.83911 4.92421 5.09131 5.12283 5.21458 5.39418 5.50211 5.54510 5.75053 5.87947 6.27517 6.39636 6.96875 7.08246 7.13647 7.88638 8.06577 9.25856 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.006243 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.967788 B = 4483.922307 C = 5692.345815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.166 3.834 4 H 0.060 0.940 5 C 0.118 3.882 6 N -0.702 5.702 7 C 0.607 3.393 8 O -0.558 6.558 9 C -0.070 4.070 10 C 0.033 3.967 11 N -0.297 5.297 12 N -0.137 5.137 13 C 0.088 3.912 14 N -0.261 5.261 15 N -0.747 5.747 16 C -0.202 4.202 17 H 0.070 0.930 18 C -0.058 4.058 19 N -0.982 5.982 20 Si 0.938 3.062 21 H -0.284 1.284 22 H -0.304 1.304 23 H -0.261 1.261 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.413 0.587 32 H 0.229 0.771 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.362 0.638 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.086 3.296 -6.568 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.058 3.942 4 H 0.078 0.922 5 C -0.006 4.006 6 N -0.353 5.353 7 C 0.391 3.609 8 O -0.436 6.436 9 C -0.231 4.231 10 C -0.150 4.150 11 N -0.137 5.137 12 N -0.041 5.041 13 C -0.050 4.050 14 N -0.111 5.111 15 N -0.390 5.390 16 C -0.333 4.333 17 H 0.088 0.912 18 C -0.249 4.249 19 N -0.634 5.634 20 Si 0.768 3.232 21 H -0.211 1.211 22 H -0.231 1.231 23 H -0.186 1.186 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.246 0.754 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.195 0.805 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.014 3.993 -6.580 16.872 hybrid contribution 0.057 -0.210 1.219 1.238 sum 15.071 3.784 -5.361 16.437 Atomic orbital electron populations 1.21695 0.96415 1.00457 1.01558 1.21954 0.96081 0.96719 1.01938 1.20732 0.91149 0.93572 0.88705 0.92231 1.21785 0.93898 0.81906 1.03012 1.45929 1.06677 1.11430 1.71235 1.16750 0.82489 0.85109 0.76546 1.90759 1.56634 1.44523 1.51703 1.23059 0.93660 0.93627 1.12772 1.25204 0.98125 0.90050 1.01588 1.73993 1.05094 1.14980 1.19638 1.48610 1.00230 1.09671 1.45628 1.22774 1.04447 0.71156 1.06604 1.74472 1.24649 0.95491 1.16521 1.42838 1.15386 1.67691 1.13122 1.18973 0.91327 1.24642 0.98340 0.91171 1.25241 0.97829 1.01668 1.00208 1.69843 1.21551 1.44774 1.27192 0.85669 0.79089 0.78312 0.80175 1.21115 1.23143 1.18585 0.92695 0.93620 0.93934 0.89923 0.92527 0.88872 0.91349 0.75105 0.75420 0.86624 0.86890 0.85239 0.80537 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.18 71.98 0.66 -4.27 16 2 C -0.13 -3.82 5.61 30.59 0.17 -3.65 16 3 C 0.17 5.58 2.59 44.99 0.12 5.69 16 4 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 5 C 0.12 3.47 5.23 86.38 0.45 3.92 16 6 N -0.70 -22.31 5.39 -466.02 -2.51 -24.82 16 7 C 0.61 19.55 7.83 86.78 0.68 20.23 16 8 O -0.56 -19.62 16.95 -3.89 -0.07 -19.69 16 9 C -0.07 -2.07 7.21 42.25 0.30 -1.77 16 10 C 0.03 0.83 12.04 85.46 1.03 1.86 16 11 N -0.30 -7.21 12.01 -56.16 -0.67 -7.89 16 12 N -0.14 -3.24 4.35 -206.54 -0.90 -4.14 16 13 C 0.09 1.11 11.55 127.77 1.48 2.59 16 14 N -0.26 -7.67 11.84 -48.16 -0.57 -8.24 16 15 N -0.75 -31.54 4.31 -322.95 -1.39 -32.93 16 16 C -0.20 -10.48 8.24 84.03 0.69 -9.78 16 17 H 0.07 3.97 7.55 -2.91 -0.02 3.95 16 18 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 19 N -0.98 -60.72 13.97 21.65 0.30 -60.42 16 20 Si 0.94 44.90 27.74 68.60 1.90 46.80 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 23 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.95 5.99 -2.38 -0.01 1.94 16 26 H 0.04 1.42 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.41 13.98 7.91 -92.70 -0.73 13.25 16 32 H 0.23 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.36 15.45 5.66 -92.71 -0.52 14.93 16 37 H 0.25 15.19 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -70.00 317.09 1.92 -68.08 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.22 Total: 31.21 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.05 Total: 12.02 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -5.74 Total: -138.43 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.07 Total: -19.69 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -70.00 1.92 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732214972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.760 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds