Wall clock time and date at job start Mon Mar 30 2020 00:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21600 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.47523 * 120.00470 * 179.97438 * 16 15 14 19 19 C 1.36592 * 125.77727 * 179.71660 * 18 16 15 20 20 N 1.34810 * 106.84084 * 179.89915 * 19 18 16 21 21 C 1.46504 * 126.59178 * 180.10441 * 20 19 18 22 22 N 1.40207 * 106.81483 * 0.35693 * 20 19 18 23 23 N 1.28765 * 108.36427 * 359.77233 * 22 20 19 24 24 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 26 26 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 27 27 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 28 28 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 32 32 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 33 33 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 34 34 H 1.08003 * 126.57588 * 0.03642 * 19 18 16 35 35 H 1.08994 * 109.47306 * 270.27434 * 21 20 19 36 36 H 1.09007 * 109.47171 * 30.27796 * 21 20 19 37 37 H 1.08999 * 109.46808 * 150.27002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6288 -1.4453 -3.7796 18 6 1.6057 0.3486 -4.8675 19 6 1.8950 0.0077 -6.1581 20 7 1.3577 0.9621 -6.9440 21 6 1.4099 1.0205 -8.4070 22 7 0.7443 1.8914 -6.0919 23 7 0.9099 1.4986 -4.8768 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.1264 -0.7995 1.2056 28 1 1.6054 -1.7198 1.2950 29 1 1.1483 0.8591 2.3518 30 1 0.6807 1.9070 5.4838 31 1 3.1264 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2953 33 1 1.1483 0.8592 -2.3518 34 1 2.4462 -0.8612 -6.4861 35 1 2.3006 1.5667 -8.7172 36 1 1.4456 0.0082 -8.8099 37 1 0.5222 1.5297 -8.7822 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732339453.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:18 Heat of formation + Delta-G solvation = 65.368298 kcal Electronic energy + Delta-G solvation = -19346.329779 eV Core-core repulsion = 16161.213089 eV Total energy + Delta-G solvation = -3185.116690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47471 -39.44072 -36.76520 -35.04630 -34.28730 -32.44931 -31.26048 -29.97713 -28.34792 -26.49782 -25.40325 -23.56810 -22.56999 -22.16597 -20.58504 -19.90358 -18.31639 -17.01722 -16.59975 -16.31091 -16.09520 -15.33496 -14.91120 -14.67272 -14.30242 -14.08108 -13.68780 -13.59734 -13.49240 -12.97611 -12.56828 -12.43777 -12.24505 -11.98062 -11.58193 -11.00937 -10.85843 -10.74567 -10.65639 -10.52667 -10.38350 -10.20721 -9.95884 -9.63034 -9.61334 -8.97499 -8.82723 -6.87465 -5.72354 -3.00688 0.81799 1.49424 1.68689 3.12216 3.19917 3.47818 3.51843 3.53072 3.95301 3.98619 4.46454 4.47474 4.63245 4.68725 4.75976 5.02288 5.11320 5.28550 5.47218 5.48773 5.62184 5.88492 5.95668 6.03346 6.04037 6.17251 6.32699 6.45826 6.51407 6.72411 6.83980 6.93037 7.41408 7.70398 7.74087 8.14066 8.46891 9.57854 10.15880 10.50637 11.50627 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.056114 B = 0.002817 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.860858 B = 9937.194040 C =10280.382178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.707 5.707 16 C 0.601 3.399 17 O -0.543 6.543 18 C -0.099 4.099 19 C 0.092 3.908 20 N -0.366 5.366 21 C 0.088 3.912 22 N -0.066 5.066 23 N -0.203 5.203 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.409 0.591 34 H 0.206 0.794 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 -1.669 -27.698 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.358 5.358 16 C 0.385 3.615 17 O -0.420 6.420 18 C -0.238 4.238 19 C -0.065 4.065 20 N -0.151 5.151 21 C -0.053 4.053 22 N -0.047 5.047 23 N -0.076 5.076 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.245 0.755 34 H 0.222 0.778 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.291 -1.201 -27.589 27.616 hybrid contribution 0.397 -0.504 0.683 0.937 sum 0.687 -1.705 -26.906 26.968 Atomic orbital electron populations 1.21801 0.94596 1.01918 1.01680 1.21563 0.96833 1.00615 0.94031 0.90385 1.20571 0.96596 0.94180 0.85367 1.42341 1.67048 1.27609 1.00548 1.19196 1.28661 1.05443 0.83661 0.91212 1.24740 1.01060 0.97455 0.97839 1.69652 1.43455 1.16670 1.28562 0.86251 0.77977 0.77686 0.84177 1.21291 1.21735 1.21296 1.21489 1.00301 0.95260 0.82622 1.45870 1.56576 1.28014 1.05313 1.16730 0.79237 0.83741 0.81788 1.90811 1.40892 1.23844 1.86438 1.21562 1.09739 0.97809 0.94733 1.23382 0.97358 0.95304 0.90450 1.50394 1.37786 1.17589 1.09315 1.22203 1.05416 1.05179 0.72551 1.82026 1.17794 1.11781 0.93050 1.74658 1.10571 1.09063 1.13358 0.92844 0.91129 0.93696 0.96107 0.95984 0.78160 0.93494 0.91036 0.91037 0.75520 0.77754 0.89165 0.88343 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.94 37.16 0.33 -1.90 16 2 C -0.11 -1.79 2.46 -90.62 -0.22 -2.01 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.16 3.25 5.65 -4.04 -0.02 3.23 16 5 N -0.73 -18.63 5.33 -59.91 -0.32 -18.95 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 10 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 C 0.13 1.81 5.06 -4.04 -0.02 1.79 16 15 N -0.71 -9.40 5.28 -61.35 -0.32 -9.72 16 16 C 0.60 8.26 7.82 -12.48 -0.10 8.17 16 17 O -0.54 -8.67 16.86 5.28 0.09 -8.58 16 18 C -0.10 -1.17 6.99 -83.55 -0.58 -1.76 16 19 C 0.09 0.77 11.31 -16.84 -0.19 0.58 16 20 N -0.37 -2.78 4.03 -67.85 -0.27 -3.06 16 21 C 0.09 0.19 11.51 59.85 0.69 0.88 16 22 N -0.07 -0.75 13.78 60.35 0.83 0.08 16 23 N -0.20 -2.58 12.04 32.85 0.40 -2.19 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.28 7.18 -51.93 -0.37 0.90 16 26 H 0.04 0.60 7.18 -51.93 -0.37 0.23 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.38 10.22 6.85 -40.82 -0.28 9.94 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.41 5.09 7.34 -40.82 -0.30 4.79 16 34 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.10 -0.03 8.14 -51.93 -0.42 -0.46 16 37 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -35.21 322.52 -4.50 -39.72 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.10 Total: 6.46 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.36 Total: 1.52 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 1.03 Total: -61.66 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.21 -4.50 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732339453.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.084 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds