Wall clock time and date at job start Mon Mar 30 2020 00:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21600 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.47523 * 120.00470 * 179.97438 * 16 15 14 19 19 C 1.36592 * 125.77727 * 179.71660 * 18 16 15 20 20 N 1.34810 * 106.84084 * 179.89915 * 19 18 16 21 21 C 1.46504 * 126.59178 * 180.10441 * 20 19 18 22 22 N 1.40207 * 106.81483 * 0.35693 * 20 19 18 23 23 N 1.28765 * 108.36427 * 359.77233 * 22 20 19 24 24 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 26 26 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 27 27 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 28 28 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 32 32 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 33 33 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 34 34 H 1.08003 * 126.57588 * 0.03642 * 19 18 16 35 35 H 1.08994 * 109.47306 * 270.27434 * 21 20 19 36 36 H 1.09007 * 109.47171 * 30.27796 * 21 20 19 37 37 H 1.08999 * 109.46808 * 150.27002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6288 -1.4453 -3.7796 18 6 1.6057 0.3486 -4.8675 19 6 1.8950 0.0077 -6.1581 20 7 1.3577 0.9621 -6.9440 21 6 1.4099 1.0205 -8.4070 22 7 0.7443 1.8914 -6.0919 23 7 0.9099 1.4986 -4.8768 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.1264 -0.7995 1.2056 28 1 1.6054 -1.7198 1.2950 29 1 1.1483 0.8591 2.3518 30 1 0.6807 1.9070 5.4838 31 1 3.1264 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2953 33 1 1.1483 0.8592 -2.3518 34 1 2.4462 -0.8612 -6.4861 35 1 2.3006 1.5667 -8.7172 36 1 1.4456 0.0082 -8.8099 37 1 0.5222 1.5297 -8.7822 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732339453.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:17 Heat of formation + Delta-G solvation = 37.963776 kcal Electronic energy + Delta-G solvation = -19347.518129 eV Core-core repulsion = 16161.213089 eV Total energy + Delta-G solvation = -3186.305039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.21009 -40.52833 -38.20296 -35.99675 -35.57249 -34.06437 -32.23237 -31.66345 -28.86640 -27.74086 -27.07361 -24.90542 -23.76170 -23.12870 -21.63036 -21.20786 -19.44523 -18.80404 -17.33440 -17.24814 -17.07817 -16.49709 -16.41502 -15.67895 -15.56295 -15.37263 -15.25522 -14.64866 -14.25984 -14.02769 -13.92394 -13.57015 -13.55390 -13.12812 -12.94488 -12.75335 -12.29439 -12.20699 -12.15066 -11.98267 -11.72837 -11.63840 -11.32593 -11.24189 -10.91244 -10.44187 -10.04258 -8.97411 -7.93241 -5.21755 0.15910 0.59457 1.18889 1.48607 1.51937 1.57936 2.11024 2.22554 2.58516 3.19011 3.40199 3.50008 3.73361 3.89904 3.96949 3.98497 4.10440 4.35516 4.39216 4.50208 4.56592 4.69659 4.73471 4.74246 4.82959 4.95636 5.05976 5.15370 5.31808 5.39988 5.45939 5.48189 5.51715 6.29042 6.40144 6.88430 7.10901 7.35638 8.11631 8.35315 9.30237 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.056114 B = 0.002817 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.860858 B = 9937.194040 C =10280.382178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.158 3.842 5 N -0.743 5.743 6 C -0.246 4.246 7 H 0.076 0.924 8 C -0.077 4.077 9 N -0.970 5.970 10 Si 0.975 3.025 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.278 1.278 14 C 0.139 3.861 15 N -0.705 5.705 16 C 0.604 3.396 17 O -0.569 6.569 18 C -0.128 4.128 19 C 0.112 3.888 20 N -0.351 5.351 21 C 0.074 3.926 22 N -0.094 5.094 23 N -0.228 5.228 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.025 0.975 29 H 0.376 0.624 30 H 0.251 0.749 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.240 0.760 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -2.653 -29.668 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.386 5.386 6 C -0.378 4.378 7 H 0.094 0.906 8 C -0.269 4.269 9 N -0.621 5.621 10 Si 0.804 3.196 11 H -0.204 1.204 12 H -0.222 1.222 13 H -0.204 1.204 14 C 0.015 3.985 15 N -0.356 5.356 16 C 0.389 3.611 17 O -0.448 6.448 18 C -0.268 4.268 19 C -0.047 4.047 20 N -0.136 5.136 21 C -0.065 4.065 22 N -0.075 5.075 23 N -0.102 5.102 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.208 0.792 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.256 0.744 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.876 -2.183 -29.616 29.709 hybrid contribution 0.242 -0.229 1.111 1.159 sum 1.117 -2.412 -28.506 28.629 Atomic orbital electron populations 1.21722 0.94146 1.02010 1.01445 1.21348 0.97016 1.00064 0.93104 0.90704 1.20721 0.96698 0.94134 0.85328 1.42536 1.66932 1.27739 1.01409 1.19617 1.27819 1.05376 0.84976 0.90650 1.25581 1.01736 0.97947 1.01647 1.69813 1.45052 1.18020 1.29174 0.85191 0.77895 0.77159 0.79392 1.20398 1.22157 1.20378 1.21247 1.00066 0.95055 0.82163 1.45793 1.56630 1.28050 1.05093 1.16936 0.78518 0.83443 0.82193 1.90787 1.42149 1.24982 1.86854 1.21485 1.11684 0.98370 0.95275 1.23873 0.95909 0.95625 0.89280 1.50751 1.35797 1.16128 1.10894 1.22742 1.06626 1.07781 0.69317 1.81930 1.19139 1.13210 0.93208 1.74619 1.11419 1.09730 1.14387 0.92569 0.93870 0.91336 0.95884 0.95713 0.79195 0.94000 0.91202 0.90866 0.75033 0.74370 0.87385 0.85068 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.94 71.98 0.64 -3.57 16 2 C -0.10 -3.06 2.46 -10.79 -0.03 -3.09 16 3 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.16 6.36 5.65 86.38 0.49 6.85 16 5 N -0.74 -38.28 5.33 -343.46 -1.83 -40.12 16 6 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 7 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 8 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 9 N -0.97 -60.17 13.06 21.65 0.28 -59.88 16 10 Si 0.97 46.82 29.55 68.60 2.03 48.84 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.14 3.85 5.06 86.38 0.44 4.28 16 15 N -0.71 -18.23 5.28 -466.27 -2.46 -20.69 16 16 C 0.60 16.06 7.82 86.69 0.68 16.73 16 17 O -0.57 -17.53 16.86 -4.03 -0.07 -17.60 16 18 C -0.13 -2.89 6.99 40.81 0.29 -2.60 16 19 C 0.11 1.60 11.31 83.85 0.95 2.54 16 20 N -0.35 -4.49 4.03 -368.59 -1.49 -5.98 16 21 C 0.07 0.07 11.51 127.77 1.47 1.54 16 22 N -0.09 -2.05 13.78 37.02 0.51 -1.54 16 23 N -0.23 -5.70 12.04 -49.99 -0.60 -6.31 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.58 7.18 -2.39 -0.02 1.56 16 26 H 0.07 1.78 7.18 -2.39 -0.02 1.77 16 27 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.38 20.44 6.85 -92.71 -0.63 19.80 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.41 10.05 7.34 -92.71 -0.68 9.37 16 34 H 0.24 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.13 -0.67 8.14 -2.38 -0.02 -0.69 16 37 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -76.42 322.52 2.38 -74.03 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.22 Total: 23.73 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.23 Total: 5.51 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -5.59 Total: -134.52 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.07 Total: -17.60 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.42 2.38 -74.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732339453.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.998 kcal (2) G-P(sol) polarization free energy of solvation -76.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds