Wall clock time and date at job start Mon Mar 30 2020 00:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00120 * 2 1 3 5 5 C 1.53007 * 109.47121 * 175.00245 * 4 2 1 6 6 N 1.46500 * 109.47078 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99722 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 6 11 11 C 1.34429 * 126.81895 * 124.99841 * 10 9 7 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46496 * 109.47111 * 120.00314 * 2 1 3 16 16 C 1.36942 * 120.00232 * 275.00310 * 15 2 1 17 17 H 1.08001 * 119.99714 * 359.97438 * 16 15 2 18 18 C 1.38810 * 120.00034 * 180.02562 * 16 15 2 19 19 N 1.31615 * 120.00482 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99622 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47230 * 59.99753 * 20 18 16 22 22 H 1.48500 * 109.46905 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47195 * 299.99686 * 20 18 16 24 24 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47181 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47002 * 59.99759 * 1 2 3 27 27 H 1.09002 * 109.47279 * 55.00092 * 4 2 1 28 28 H 1.08995 * 109.47424 * 295.00270 * 4 2 1 29 29 H 1.08993 * 109.47323 * 60.00013 * 5 4 2 30 30 H 1.09001 * 109.46543 * 299.99780 * 5 4 2 31 31 H 0.96997 * 120.00182 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.47196 * 60.00345 * 9 7 6 33 33 H 1.08995 * 109.47509 * 300.00521 * 9 7 6 34 34 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 35 35 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00089 * 94.99846 * 15 2 1 37 37 H 0.96996 * 120.00487 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3739 -1.3386 -2.7758 8 8 6.1583 -0.7995 -2.0242 9 6 5.8763 -2.0490 -4.0064 10 7 7.3363 -1.9455 -4.0681 11 6 8.2124 -2.9604 -4.1662 12 7 9.4187 -2.4543 -4.1928 13 6 9.3531 -1.1258 -4.1146 14 7 8.0990 -0.7668 -4.0311 15 7 2.0182 -0.6907 1.1961 16 6 2.1490 -0.0076 2.3758 17 1 1.8925 1.0404 2.4242 18 6 2.6122 -0.6620 3.5090 19 7 2.9253 -1.9390 3.4499 20 14 2.7912 0.2700 5.1180 21 1 1.4690 0.8068 5.5288 22 1 3.3000 -0.6485 6.1680 23 1 3.7463 1.3925 4.9362 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6053 -0.2617 -2.1370 28 1 1.7516 -1.7714 -1.2057 29 1 3.9994 -1.0728 -0.4260 30 1 3.8531 0.4370 -1.3573 31 1 3.4258 -1.7342 -3.1115 32 1 5.4413 -1.5897 -4.8941 33 1 5.5883 -3.0993 -3.9627 34 1 7.9640 -4.0103 -4.2138 35 1 10.1993 -0.4547 -4.1150 36 1 2.2489 -1.6318 1.1525 37 1 3.2486 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753018850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:27 Heat of formation + Delta-G solvation = 66.685021 kcal Electronic energy + Delta-G solvation = -19636.125303 eV Core-core repulsion = 16451.065711 eV Total energy + Delta-G solvation = -3185.059592 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16562 -39.59544 -36.67578 -34.49732 -34.14390 -32.30022 -31.29612 -29.77462 -28.55480 -27.47731 -23.95279 -23.02676 -22.09668 -22.01334 -20.71819 -19.73202 -17.62911 -17.50254 -17.13433 -16.03425 -15.63649 -15.32285 -14.92969 -14.75271 -14.26868 -14.05438 -13.63719 -13.51908 -13.37127 -12.67298 -12.53118 -12.09053 -11.96504 -11.58874 -11.13461 -10.95074 -10.76333 -10.67482 -10.41268 -10.28910 -10.13856 -10.01087 -9.86348 -9.65874 -9.55236 -8.99366 -8.88743 -6.97298 -5.76486 -3.05395 1.49245 2.03473 2.52013 2.88749 3.10282 3.45403 3.50201 3.50687 4.16895 4.23205 4.51505 4.60117 4.64480 4.74444 5.11688 5.22428 5.33930 5.53060 5.62910 5.82969 6.01380 6.06128 6.13127 6.27860 6.31980 6.34071 6.39288 6.54676 6.60658 6.65220 6.82855 7.02719 7.44425 7.70452 7.95756 8.17050 8.41917 9.53356 10.09253 10.43690 11.46113 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.003761 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.827383 B = 7443.958801 C = 8339.321171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.725 5.725 7 C 0.493 3.507 8 O -0.506 6.506 9 C 0.111 3.889 10 N -0.369 5.369 11 C 0.254 3.746 12 N -0.546 5.546 13 C 0.190 3.810 14 N -0.288 5.288 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.219 0.781 35 H 0.216 0.784 36 H 0.383 0.617 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -2.993 -19.791 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.378 5.378 7 C 0.275 3.725 8 O -0.379 6.379 9 C -0.016 4.016 10 N -0.160 5.160 11 C -0.043 4.043 12 N -0.273 5.273 13 C -0.112 4.112 14 N -0.115 5.115 15 N -0.366 5.366 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.230 0.770 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.235 0.765 35 H 0.232 0.768 36 H 0.217 0.783 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.206 -1.904 -19.029 19.391 hybrid contribution -0.430 -0.309 0.738 0.908 sum 2.776 -2.213 -18.291 18.633 Atomic orbital electron populations 1.22425 0.99091 1.00833 1.00009 1.20148 0.91913 0.95596 0.85985 0.93293 1.22061 0.93682 1.01839 0.99452 1.21492 0.94505 0.97224 0.86704 1.46025 1.06537 1.57372 1.27866 1.20349 0.83219 0.81850 0.87044 1.90848 1.54979 1.43839 1.48270 1.21608 0.76487 1.04043 0.99439 1.49982 1.06760 1.05028 1.54272 1.26072 0.84736 0.96498 0.96996 1.70521 1.22540 1.09278 1.24959 1.26021 0.94889 0.91507 0.98829 1.78203 1.04374 1.05481 1.23400 1.42441 1.78146 1.10619 1.05365 1.19180 1.36745 0.93848 0.87363 0.91249 1.24716 1.02018 0.95949 0.98063 1.69634 1.50815 1.08688 1.29016 0.86293 0.77750 0.78698 0.83608 1.21316 1.21714 1.21221 0.93519 0.92685 0.94565 0.91858 0.91547 0.89634 0.91702 0.76950 0.86475 0.85213 0.76456 0.76751 0.78326 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.49 37.15 0.35 -2.41 16 2 C 0.17 3.24 2.89 -67.94 -0.20 3.04 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.87 4.87 -26.73 -0.13 -2.00 16 5 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 6 N -0.73 -8.35 5.56 -60.29 -0.33 -8.68 16 7 C 0.49 6.53 7.87 -10.98 -0.09 6.44 16 8 O -0.51 -9.84 15.73 5.56 0.09 -9.75 16 9 C 0.11 0.89 7.03 -5.19 -0.04 0.85 16 10 N -0.37 -4.23 3.41 -63.81 -0.22 -4.45 16 11 C 0.25 2.52 12.63 -90.65 -1.14 1.38 16 12 N -0.55 -6.85 11.19 -15.83 -0.18 -7.02 16 13 C 0.19 2.41 13.03 -91.81 -1.20 1.21 16 14 N -0.29 -4.18 11.80 29.29 0.35 -3.84 16 15 N -0.72 -17.47 4.57 -53.43 -0.24 -17.71 16 16 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 20 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.72 7.75 -51.93 -0.40 1.32 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.40 2.88 8.47 -40.82 -0.35 2.53 16 32 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.13 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.22 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.22 1.95 8.06 -52.49 -0.42 1.52 16 36 H 0.38 9.83 7.80 -40.82 -0.32 9.51 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -38.08 324.43 -7.91 -46.00 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.26 Total: 7.16 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.71 Total: 3.24 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: 0.10 Total: -69.15 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -38.08 -7.91 -46.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753018850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.683 kcal (2) G-P(sol) polarization free energy of solvation -38.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds