Wall clock time and date at job start Mon Mar 30 2020 00:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00120 * 2 1 3 5 5 C 1.53007 * 109.47121 * 175.00245 * 4 2 1 6 6 N 1.46500 * 109.47078 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99722 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 6 11 11 C 1.34429 * 126.81895 * 124.99841 * 10 9 7 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46496 * 109.47111 * 120.00314 * 2 1 3 16 16 C 1.36942 * 120.00232 * 275.00310 * 15 2 1 17 17 H 1.08001 * 119.99714 * 359.97438 * 16 15 2 18 18 C 1.38810 * 120.00034 * 180.02562 * 16 15 2 19 19 N 1.31615 * 120.00482 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99622 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47230 * 59.99753 * 20 18 16 22 22 H 1.48500 * 109.46905 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47195 * 299.99686 * 20 18 16 24 24 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47181 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47002 * 59.99759 * 1 2 3 27 27 H 1.09002 * 109.47279 * 55.00092 * 4 2 1 28 28 H 1.08995 * 109.47424 * 295.00270 * 4 2 1 29 29 H 1.08993 * 109.47323 * 60.00013 * 5 4 2 30 30 H 1.09001 * 109.46543 * 299.99780 * 5 4 2 31 31 H 0.96997 * 120.00182 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.47196 * 60.00345 * 9 7 6 33 33 H 1.08995 * 109.47509 * 300.00521 * 9 7 6 34 34 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 35 35 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00089 * 94.99846 * 15 2 1 37 37 H 0.96996 * 120.00487 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3739 -1.3386 -2.7758 8 8 6.1583 -0.7995 -2.0242 9 6 5.8763 -2.0490 -4.0064 10 7 7.3363 -1.9455 -4.0681 11 6 8.2124 -2.9604 -4.1662 12 7 9.4187 -2.4543 -4.1928 13 6 9.3531 -1.1258 -4.1146 14 7 8.0990 -0.7668 -4.0311 15 7 2.0182 -0.6907 1.1961 16 6 2.1490 -0.0076 2.3758 17 1 1.8925 1.0404 2.4242 18 6 2.6122 -0.6620 3.5090 19 7 2.9253 -1.9390 3.4499 20 14 2.7912 0.2700 5.1180 21 1 1.4690 0.8068 5.5288 22 1 3.3000 -0.6485 6.1680 23 1 3.7463 1.3925 4.9362 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6053 -0.2617 -2.1370 28 1 1.7516 -1.7714 -1.2057 29 1 3.9994 -1.0728 -0.4260 30 1 3.8531 0.4370 -1.3573 31 1 3.4258 -1.7342 -3.1115 32 1 5.4413 -1.5897 -4.8941 33 1 5.5883 -3.0993 -3.9627 34 1 7.9640 -4.0103 -4.2138 35 1 10.1993 -0.4547 -4.1150 36 1 2.2489 -1.6318 1.1525 37 1 3.2486 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753018850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:27 Heat of formation + Delta-G solvation = 38.337569 kcal Electronic energy + Delta-G solvation = -19637.354541 eV Core-core repulsion = 16451.065711 eV Total energy + Delta-G solvation = -3186.288830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.98617 -40.69210 -38.16724 -35.88982 -34.99108 -34.14722 -32.16087 -31.26524 -30.04353 -28.46745 -25.86401 -24.29752 -23.04308 -22.87451 -21.87327 -21.10856 -19.30980 -18.45703 -18.28928 -17.07944 -16.75985 -16.68236 -16.18611 -15.77896 -15.64178 -15.33135 -15.03042 -14.72707 -14.60028 -14.13514 -13.64056 -13.57377 -13.25346 -12.81590 -12.77894 -12.63100 -12.32828 -12.25074 -12.13546 -11.68049 -11.61058 -11.32053 -11.01337 -10.95015 -10.76738 -10.51390 -10.13548 -8.98930 -7.94689 -5.20977 0.69149 1.34487 1.44269 1.47116 1.52456 1.53364 2.02712 2.16822 2.55547 3.39725 3.53625 3.55382 3.75740 3.91605 4.00927 4.09279 4.15978 4.22745 4.35771 4.43432 4.66256 4.77808 4.88177 5.02740 5.10539 5.21207 5.25399 5.40002 5.41769 5.48280 5.52529 5.61847 5.89072 6.28829 6.53475 7.12675 7.24680 7.35007 8.13451 8.34308 9.28601 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.003761 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.827383 B = 7443.958801 C = 8339.321171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.038 0.962 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.705 5.705 7 C 0.486 3.514 8 O -0.579 6.579 9 C 0.116 3.884 10 N -0.378 5.378 11 C 0.263 3.737 12 N -0.578 5.578 13 C 0.183 3.817 14 N -0.339 5.339 15 N -0.735 5.735 16 C -0.236 4.236 17 H 0.072 0.928 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.964 3.036 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.284 1.284 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.423 0.577 32 H 0.152 0.848 33 H 0.186 0.814 34 H 0.270 0.730 35 H 0.234 0.766 36 H 0.372 0.628 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 -3.765 -22.168 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.056 0.944 4 C -0.152 4.152 5 C 0.010 3.990 6 N -0.359 5.359 7 C 0.271 3.729 8 O -0.457 6.457 9 C -0.009 4.009 10 N -0.169 5.169 11 C -0.032 4.032 12 N -0.306 5.306 13 C -0.120 4.120 14 N -0.166 5.166 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.090 0.910 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.794 3.206 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.211 1.211 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.170 0.830 33 H 0.203 0.797 34 H 0.285 0.715 35 H 0.250 0.750 36 H 0.204 0.796 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.650 -2.664 -21.483 21.711 hybrid contribution -0.014 -0.048 1.387 1.388 sum 1.637 -2.712 -20.096 20.344 Atomic orbital electron populations 1.22259 0.97044 1.01159 1.00822 1.20473 0.93222 0.95090 0.85859 0.94414 1.21904 0.92155 1.02343 0.98786 1.21048 0.95492 0.95819 0.86600 1.45740 1.06935 1.56534 1.26720 1.21384 0.82816 0.80820 0.87847 1.90828 1.56755 1.47002 1.51099 1.22010 0.74761 1.06806 0.97291 1.50169 1.07979 1.04483 1.54296 1.27063 0.83768 0.98041 0.94375 1.70522 1.24338 1.09278 1.26441 1.26480 0.95179 0.92208 0.98149 1.78103 1.05386 1.07985 1.25148 1.42634 1.78443 1.10248 1.06277 1.19562 1.34617 0.94062 0.88611 0.91018 1.25451 1.03209 0.96853 1.01245 1.69781 1.52824 1.10093 1.29291 0.85340 0.77941 0.77338 0.79966 1.20169 1.22278 1.21061 0.93397 0.95106 0.90508 0.87401 0.90429 0.94881 0.93836 0.73858 0.83031 0.79681 0.71505 0.75016 0.79562 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.49 71.98 0.68 -4.14 16 2 C 0.16 5.86 2.89 44.99 0.13 5.99 16 3 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 4 C -0.11 -2.95 4.87 30.60 0.15 -2.80 16 5 C 0.13 4.20 5.56 86.38 0.48 4.68 16 6 N -0.71 -14.77 5.56 -463.05 -2.57 -17.34 16 7 C 0.49 12.23 7.87 87.66 0.69 12.92 16 8 O -0.58 -23.16 15.73 -3.03 -0.05 -23.21 16 9 C 0.12 1.43 7.03 85.63 0.60 2.03 16 10 N -0.38 -7.92 3.41 -355.80 -1.21 -9.13 16 11 C 0.26 4.57 12.63 180.36 2.28 6.85 16 12 N -0.58 -13.95 11.19 -203.99 -2.28 -16.23 16 13 C 0.18 4.65 13.03 180.76 2.36 7.00 16 14 N -0.34 -9.84 11.80 -61.24 -0.72 -10.57 16 15 N -0.74 -35.96 4.57 -322.96 -1.48 -37.44 16 16 C -0.24 -13.20 9.93 84.03 0.83 -12.36 16 17 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 19 N -0.97 -60.08 13.06 21.65 0.28 -59.79 16 20 Si 0.96 47.40 29.55 68.60 2.03 49.43 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 23 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 1.39 7.75 -2.39 -0.02 1.37 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.42 4.36 8.47 -92.71 -0.79 3.58 16 32 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.19 0.20 8.09 -2.39 -0.02 0.18 16 34 H 0.27 1.31 8.06 -2.91 -0.02 1.28 16 35 H 0.23 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.37 19.56 7.80 -92.71 -0.72 18.84 16 37 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -89.77 324.43 2.24 -87.53 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.42 Total: 20.52 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 8.67 Total: 16.23 kcal Atomic # 7 Polarization: -142.52 SS G_CDS: -7.99 Total: -150.51 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.05 Total: -23.21 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -89.77 2.24 -87.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753018850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.871 kcal (2) G-P(sol) polarization free energy of solvation -89.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds