Wall clock time and date at job start Mon Mar 30 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47140 * 2 1 4 4 N 1.28519 * 124.44647 * 90.02179 * 3 2 1 5 5 C 1.31135 * 109.06379 * 180.02562 * 4 3 2 6 6 C 1.40925 * 105.77211 * 359.97438 * 5 4 3 7 7 C 1.47799 * 127.23340 * 180.02562 * 6 5 4 8 8 O 1.21561 * 120.00305 * 0.26942 * 7 6 5 9 9 N 1.34784 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46956 * 325.00197 * 10 9 7 12 12 C 1.52995 * 109.47022 * 84.99732 * 10 9 7 13 13 C 1.52999 * 109.47155 * 205.00183 * 10 9 7 14 14 N 1.46494 * 109.47192 * 55.00114 * 13 10 9 15 15 C 1.36943 * 119.99885 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99679 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00029 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99922 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47181 * 59.99890 * 19 17 15 21 21 H 1.48493 * 109.47471 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47018 * 300.00217 * 19 17 15 23 23 N 1.28596 * 124.44487 * 270.34111 * 3 2 1 24 24 H 1.09000 * 109.47409 * 300.00014 * 1 2 3 25 25 H 1.09002 * 109.46877 * 60.00210 * 1 2 3 26 26 H 1.08996 * 109.46810 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47409 * 239.99986 * 2 1 3 28 28 H 1.09002 * 109.46877 * 119.99790 * 2 1 3 29 29 H 1.07993 * 127.11481 * 180.02562 * 5 4 3 30 30 H 0.96999 * 120.00044 * 359.97438 * 9 7 6 31 31 H 1.09005 * 109.47314 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.47831 * 300.00098 * 12 10 9 33 33 H 1.08996 * 109.47227 * 60.00172 * 12 10 9 34 34 H 1.09001 * 109.46859 * 174.99873 * 13 10 9 35 35 H 1.09000 * 109.46643 * 294.99576 * 13 10 9 36 36 H 0.97004 * 120.00480 * 359.97438 * 14 13 10 37 37 H 0.96999 * 120.00028 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0598 5 6 2.6819 3.2587 0.7120 6 6 2.6848 3.2678 -0.6972 7 6 3.0788 4.3831 -1.5835 8 8 3.4561 5.4352 -1.1055 9 7 3.0255 4.2315 -2.9217 10 6 3.4155 5.3371 -3.8002 11 1 3.1242 6.2835 -3.3445 12 6 4.9315 5.3151 -4.0052 13 6 2.7157 5.1854 -5.1523 14 7 1.2689 5.0866 -4.9449 15 6 0.4315 4.9435 -6.0190 16 1 0.8377 4.9038 -7.0189 17 6 -0.9394 4.8494 -5.8225 18 7 -1.4344 4.8972 -4.6038 19 14 -2.0817 4.6534 -7.2874 20 1 -1.7380 3.4083 -8.0201 21 1 -3.4867 4.5773 -6.8130 22 1 -1.9284 5.8195 -8.1941 23 7 2.2548 2.0691 -1.0605 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9679 4.0663 1.3694 30 1 2.7289 3.3904 -3.3031 31 1 5.2219 6.1379 -4.6585 32 1 5.4302 5.4232 -3.0420 33 1 5.2229 4.3688 -4.4609 34 1 2.9352 6.0531 -5.7744 35 1 3.0743 4.2831 -5.6477 36 1 0.9040 5.1218 -4.0468 37 1 -2.3924 4.8318 -4.4665 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754264899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:33 Heat of formation + Delta-G solvation = 79.789156 kcal Electronic energy + Delta-G solvation = -20234.031643 eV Core-core repulsion = 17049.540289 eV Total energy + Delta-G solvation = -3184.491355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.57614 -39.30762 -36.15073 -34.90488 -33.64694 -32.69186 -31.25972 -30.42577 -29.70517 -25.72090 -25.15923 -23.83889 -22.58054 -21.54225 -20.85533 -19.98477 -17.81810 -17.18810 -16.85212 -16.52770 -15.78518 -15.08385 -14.78342 -14.44064 -14.31256 -13.83114 -13.63329 -13.26814 -12.94684 -12.41113 -12.39306 -12.19781 -12.11567 -11.82838 -11.63645 -11.56196 -10.93421 -10.89605 -10.81016 -10.46252 -10.35213 -10.07267 -9.87596 -9.72531 -9.39747 -8.89999 -8.67927 -6.94184 -5.75874 -3.05847 1.45743 2.02685 2.14621 3.39626 3.43758 3.47922 3.49025 3.55777 3.99142 4.58122 4.61056 4.64585 4.85810 4.98996 5.13362 5.29084 5.36592 5.47911 5.52333 5.56288 5.68444 5.74770 5.87287 6.02604 6.04975 6.13120 6.21325 6.42708 6.48854 6.57265 6.71432 6.94494 7.68733 7.82514 8.21337 8.41448 8.48753 9.53166 10.09713 10.44946 11.46222 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.005803 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.625824 B = 4823.653398 C = 6303.303693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.135 3.865 3 N -0.143 5.143 4 N -0.295 5.295 5 C 0.031 3.969 6 C -0.041 4.041 7 C 0.610 3.390 8 O -0.538 6.538 9 N -0.693 5.693 10 C 0.132 3.868 11 H 0.090 0.910 12 C -0.158 4.158 13 C 0.144 3.856 14 N -0.731 5.731 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 N -0.241 5.241 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.206 0.794 30 H 0.410 0.590 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 -9.323 9.106 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 N -0.047 5.047 4 N -0.135 5.135 5 C -0.152 4.152 6 C -0.204 4.204 7 C 0.393 3.607 8 O -0.413 6.413 9 N -0.344 5.344 10 C 0.028 3.972 11 H 0.108 0.892 12 C -0.216 4.216 13 C 0.016 3.984 14 N -0.376 5.376 15 C -0.374 4.374 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.212 1.212 23 N -0.089 5.089 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.223 0.777 30 H 0.246 0.754 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.009 -9.863 9.252 16.249 hybrid contribution -0.812 0.322 -0.666 1.098 sum 8.197 -9.541 8.586 15.229 Atomic orbital electron populations 1.22210 0.92775 1.03960 1.04275 1.22071 0.96405 0.74165 1.05814 1.48251 1.43833 1.13380 0.99193 1.73944 1.17993 1.05736 1.15798 1.24795 1.01566 0.95129 0.93755 1.23144 1.08714 0.93762 0.94800 1.16610 0.77556 0.84760 0.81822 1.90775 1.48239 1.26777 1.75542 1.45850 1.65729 1.18028 1.04784 1.21329 0.94045 0.90540 0.91279 0.89209 1.22106 0.95456 1.02093 1.01982 1.20988 0.86154 0.98844 0.92392 1.42355 0.99415 1.88543 1.07333 1.19171 0.88037 1.42420 0.87734 0.91174 1.24753 0.96822 1.02837 0.96407 1.69672 1.11997 1.57119 1.19075 0.86265 0.80127 0.77908 0.81833 1.21300 1.21753 1.21244 1.74442 1.14209 1.04712 1.15558 0.91381 0.90737 0.89551 0.87135 0.87305 0.77715 0.75377 0.91479 0.92308 0.92530 0.94690 0.95741 0.77970 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16 2 C 0.13 1.17 7.24 -4.04 -0.03 1.14 16 3 N -0.14 -1.93 3.94 -10.61 -0.04 -1.97 16 4 N -0.30 -4.15 12.01 30.90 0.37 -3.78 16 5 C 0.03 0.45 12.04 -16.83 -0.20 0.25 16 6 C -0.04 -0.68 7.21 -82.68 -0.60 -1.27 16 7 C 0.61 10.99 7.79 -12.35 -0.10 10.89 16 8 O -0.54 -10.65 16.62 5.31 0.09 -10.56 16 9 N -0.69 -12.13 4.51 -54.76 -0.25 -12.38 16 10 C 0.13 2.29 2.73 -67.93 -0.19 2.10 16 11 H 0.09 1.71 7.58 -51.92 -0.39 1.32 16 12 C -0.16 -2.19 9.48 37.16 0.35 -1.83 16 13 C 0.14 2.85 5.82 -4.05 -0.02 2.82 16 14 N -0.73 -18.47 5.43 -59.91 -0.33 -18.79 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 N -0.24 -3.82 11.84 33.42 0.40 -3.42 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.21 2.43 8.06 -52.49 -0.42 2.01 16 30 H 0.41 7.21 8.37 -40.82 -0.34 6.87 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.39 10.50 7.33 -40.82 -0.30 10.20 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -33.68 325.24 -5.04 -38.71 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.23 Total: 11.91 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.65 Total: 5.64 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: 0.88 Total: -67.96 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.68 -5.04 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754264899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.501 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds