Wall clock time and date at job start Mon Mar 30 2020 00:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47140 * 2 1 4 4 N 1.28519 * 124.44647 * 90.02179 * 3 2 1 5 5 C 1.31135 * 109.06379 * 180.02562 * 4 3 2 6 6 C 1.40925 * 105.77211 * 359.97438 * 5 4 3 7 7 C 1.47799 * 127.23340 * 180.02562 * 6 5 4 8 8 O 1.21561 * 120.00305 * 0.26942 * 7 6 5 9 9 N 1.34784 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46956 * 325.00197 * 10 9 7 12 12 C 1.52995 * 109.47022 * 84.99732 * 10 9 7 13 13 C 1.52999 * 109.47155 * 205.00183 * 10 9 7 14 14 N 1.46494 * 109.47192 * 55.00114 * 13 10 9 15 15 C 1.36943 * 119.99885 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99679 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00029 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99922 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47181 * 59.99890 * 19 17 15 21 21 H 1.48493 * 109.47471 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47018 * 300.00217 * 19 17 15 23 23 N 1.28596 * 124.44487 * 270.34111 * 3 2 1 24 24 H 1.09000 * 109.47409 * 300.00014 * 1 2 3 25 25 H 1.09002 * 109.46877 * 60.00210 * 1 2 3 26 26 H 1.08996 * 109.46810 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47409 * 239.99986 * 2 1 3 28 28 H 1.09002 * 109.46877 * 119.99790 * 2 1 3 29 29 H 1.07993 * 127.11481 * 180.02562 * 5 4 3 30 30 H 0.96999 * 120.00044 * 359.97438 * 9 7 6 31 31 H 1.09005 * 109.47314 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.47831 * 300.00098 * 12 10 9 33 33 H 1.08996 * 109.47227 * 60.00172 * 12 10 9 34 34 H 1.09001 * 109.46859 * 174.99873 * 13 10 9 35 35 H 1.09000 * 109.46643 * 294.99576 * 13 10 9 36 36 H 0.97004 * 120.00480 * 359.97438 * 14 13 10 37 37 H 0.96999 * 120.00028 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0598 5 6 2.6819 3.2587 0.7120 6 6 2.6848 3.2678 -0.6972 7 6 3.0788 4.3831 -1.5835 8 8 3.4561 5.4352 -1.1055 9 7 3.0255 4.2315 -2.9217 10 6 3.4155 5.3371 -3.8002 11 1 3.1242 6.2835 -3.3445 12 6 4.9315 5.3151 -4.0052 13 6 2.7157 5.1854 -5.1523 14 7 1.2689 5.0866 -4.9449 15 6 0.4315 4.9435 -6.0190 16 1 0.8377 4.9038 -7.0189 17 6 -0.9394 4.8494 -5.8225 18 7 -1.4344 4.8972 -4.6038 19 14 -2.0817 4.6534 -7.2874 20 1 -1.7380 3.4083 -8.0201 21 1 -3.4867 4.5773 -6.8130 22 1 -1.9284 5.8195 -8.1941 23 7 2.2548 2.0691 -1.0605 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9679 4.0663 1.3694 30 1 2.7289 3.3904 -3.3031 31 1 5.2219 6.1379 -4.6585 32 1 5.4302 5.4232 -3.0420 33 1 5.2229 4.3688 -4.4609 34 1 2.9352 6.0531 -5.7744 35 1 3.0743 4.2831 -5.6477 36 1 0.9040 5.1218 -4.0468 37 1 -2.3924 4.8318 -4.4665 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754264899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:32 Heat of formation + Delta-G solvation = 54.180889 kcal Electronic energy + Delta-G solvation = -20235.142101 eV Core-core repulsion = 17049.540289 eV Total energy + Delta-G solvation = -3185.601812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.69838 -40.72647 -37.72074 -35.81089 -35.48463 -33.93282 -32.91160 -31.76937 -31.00160 -27.42512 -26.29324 -24.95839 -24.40137 -22.58459 -22.23260 -21.35619 -19.35839 -18.74714 -18.16740 -17.65184 -17.22378 -16.67389 -16.08022 -15.81347 -15.51737 -15.23386 -15.15515 -14.99497 -14.01866 -13.76296 -13.64295 -13.50075 -13.16601 -13.09701 -12.93714 -12.74232 -12.65075 -12.36933 -12.20110 -12.06338 -11.89084 -11.70511 -11.51560 -11.31211 -10.94367 -10.53034 -10.07582 -9.00985 -7.93482 -5.23525 0.22635 0.88194 1.21531 1.47706 1.50947 1.56866 2.07063 2.22027 2.56577 2.89139 3.40487 3.68645 3.85476 3.90310 3.94151 4.02458 4.10686 4.23677 4.31753 4.51884 4.58544 4.66726 4.72370 4.81607 4.87481 4.94997 4.96946 5.12034 5.14518 5.32631 5.49982 5.52698 5.57042 6.26259 6.42682 7.01614 7.12489 7.33436 8.07553 8.30884 9.29361 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.005803 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.625824 B = 4823.653398 C = 6303.303693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.133 5.133 4 N -0.295 5.295 5 C 0.029 3.971 6 C -0.068 4.068 7 C 0.608 3.392 8 O -0.562 6.562 9 N -0.692 5.692 10 C 0.138 3.862 11 H 0.068 0.932 12 C -0.146 4.146 13 C 0.145 3.855 14 N -0.745 5.745 15 C -0.244 4.244 16 H 0.081 0.919 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.975 3.025 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.278 1.278 23 N -0.255 5.255 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.226 0.774 30 H 0.410 0.590 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.372 0.628 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 -10.614 8.557 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.004 3.996 3 N -0.039 5.039 4 N -0.135 5.135 5 C -0.154 4.154 6 C -0.229 4.229 7 C 0.392 3.608 8 O -0.440 6.440 9 N -0.342 5.342 10 C 0.034 3.966 11 H 0.086 0.914 12 C -0.205 4.205 13 C 0.018 3.982 14 N -0.388 5.388 15 C -0.376 4.376 16 H 0.099 0.901 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.804 3.196 20 H -0.201 1.201 21 H -0.226 1.226 22 H -0.204 1.204 23 N -0.104 5.104 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.147 0.853 28 H 0.159 0.841 29 H 0.242 0.758 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.204 0.796 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.849 -11.157 8.668 17.223 hybrid contribution -1.027 0.651 -0.478 1.306 sum 8.822 -10.507 8.191 15.978 Atomic orbital electron populations 1.22187 0.92702 1.05551 1.02206 1.22633 0.96419 0.72259 1.08334 1.48832 1.42221 1.14334 0.98480 1.73950 1.17979 1.05627 1.15901 1.25154 1.01142 0.95832 0.93263 1.23005 1.10562 0.93909 0.95438 1.16801 0.77067 0.84914 0.81970 1.90746 1.49501 1.27810 1.75918 1.45854 1.65616 1.17908 1.04837 1.21262 0.96122 0.89550 0.89713 0.91370 1.22015 0.92293 1.03718 1.02435 1.21159 0.83397 0.99581 0.94054 1.42552 1.01562 1.88545 1.06131 1.19626 0.88637 1.40548 0.88772 0.90123 1.25589 0.98555 1.03692 0.98950 1.69850 1.11702 1.59209 1.21272 0.85191 0.77447 0.78291 0.78674 1.20121 1.22557 1.20417 1.74390 1.14503 1.04821 1.16672 0.92305 0.93796 0.86155 0.85343 0.84137 0.75801 0.75465 0.89556 0.92582 0.91076 0.93741 0.94290 0.79569 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 71.98 0.74 -1.95 16 2 C 0.12 1.86 7.24 86.38 0.63 2.48 16 3 N -0.13 -3.46 3.94 -187.49 -0.74 -4.20 16 4 N -0.29 -7.98 12.01 -56.17 -0.67 -8.66 16 5 C 0.03 0.83 12.04 85.46 1.03 1.86 16 6 C -0.07 -2.25 7.21 42.24 0.30 -1.95 16 7 C 0.61 22.28 7.79 86.77 0.68 22.96 16 8 O -0.56 -22.66 16.62 -3.91 -0.06 -22.72 16 9 N -0.69 -24.38 4.51 -445.44 -2.01 -26.39 16 10 C 0.14 4.70 2.73 44.99 0.12 4.83 16 11 H 0.07 2.63 7.58 -2.38 -0.02 2.62 16 12 C -0.15 -3.79 9.48 71.98 0.68 -3.11 16 13 C 0.14 5.57 5.82 86.38 0.50 6.07 16 14 N -0.74 -37.68 5.43 -343.46 -1.87 -39.54 16 15 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 18 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 19 Si 0.98 46.03 29.55 68.60 2.03 48.05 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 N -0.25 -8.00 11.84 -48.17 -0.57 -8.57 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.23 5.20 8.06 -2.91 -0.02 5.18 16 30 H 0.41 14.49 8.37 -92.71 -0.78 13.72 16 31 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.37 20.70 7.33 -92.71 -0.68 20.02 16 37 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -72.59 325.24 2.01 -70.58 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.36 Total: 36.67 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.99 Total: 14.66 kcal Atomic # 7 Polarization: -141.66 SS G_CDS: -5.58 Total: -147.24 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.06 Total: -22.72 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.59 2.01 -70.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754264899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.764 kcal (2) G-P(sol) polarization free energy of solvation -72.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds