Wall clock time and date at job start Mon Mar 30 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.36937 * 119.99744 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99818 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46939 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46626 * 120.00150 * 10 8 6 13 13 H 1.48492 * 109.47324 * 240.00069 * 10 8 6 14 14 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 15 15 C 1.34770 * 120.00256 * 84.99846 * 14 2 1 16 16 O 1.21684 * 120.00380 * 359.97438 * 15 14 2 17 17 C 1.46776 * 119.99970 * 180.02562 * 15 14 2 18 18 C 1.41485 * 126.51869 * 359.68814 * 17 15 14 19 19 N 1.30282 * 108.18725 * 179.85296 * 18 17 15 20 20 N 1.39894 * 109.23429 * 0.41117 * 19 18 17 21 21 C 1.46500 * 125.74687 * 179.75628 * 20 19 18 22 22 C 1.34839 * 108.50736 * 359.73536 * 20 19 18 23 23 N 1.38006 * 126.44960 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 28 28 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 29 29 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 31 31 H 0.97005 * 119.99374 * 264.99912 * 14 2 1 32 32 H 1.08003 * 125.90451 * 0.02562 * 18 17 15 33 33 H 1.09004 * 109.47383 * 269.97191 * 21 20 19 34 34 H 1.09005 * 109.47243 * 29.97267 * 21 20 19 35 35 H 1.08998 * 109.47132 * 149.97426 * 21 20 19 36 36 H 0.97000 * 120.00625 * 179.97438 * 23 22 20 37 37 H 0.97003 * 120.00311 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4389 2.2066 7 1 3.6468 -1.8440 3.0515 8 6 5.5673 -1.5380 2.1513 9 7 6.2219 -1.0437 1.1219 10 14 6.5001 -2.3729 3.5378 11 1 5.5396 -2.8405 4.5693 12 1 7.2519 -3.5347 2.9991 13 1 7.4502 -1.4077 4.1467 14 7 2.0184 -0.6905 -1.1962 15 6 2.1471 -0.0181 -2.3571 16 8 1.8573 1.1625 -2.4119 17 6 2.6359 -0.7100 -3.5557 18 6 3.0153 -2.0700 -3.6469 19 7 3.3884 -2.3068 -4.8724 20 7 3.2808 -1.1307 -5.6223 21 6 3.6123 -0.9876 -7.0421 22 6 2.8202 -0.1511 -4.8184 23 7 2.5765 1.1586 -5.1787 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7517 -0.1584 2.1369 28 1 1.6055 -1.7199 1.2951 29 1 3.9825 -0.4621 0.4319 30 1 7.1887 -1.1127 1.0834 31 1 2.2491 -1.6317 -1.1527 32 1 2.9960 -2.7884 -2.8406 33 1 4.6598 -0.7037 -7.1439 34 1 3.4417 -1.9356 -7.5525 35 1 2.9823 -0.2172 -7.4865 36 1 2.2433 1.7887 -4.5208 37 1 2.7384 1.4491 -6.0899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754265562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:06 Heat of formation + Delta-G solvation = 48.086372 kcal Electronic energy + Delta-G solvation = -20327.287345 eV Core-core repulsion = 17141.421254 eV Total energy + Delta-G solvation = -3185.866090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20302 -38.84935 -35.97510 -34.86986 -33.46193 -33.06090 -31.18130 -29.91007 -28.36765 -26.95061 -25.57775 -22.95775 -22.31779 -21.12384 -20.12314 -19.79450 -17.96205 -17.12416 -16.62310 -16.06262 -15.74610 -15.48175 -14.73381 -14.46987 -14.19982 -13.60017 -13.53345 -13.27711 -13.09009 -12.81305 -12.80019 -12.23157 -12.10959 -11.95316 -11.48098 -11.21300 -10.84831 -10.79645 -10.72456 -10.35037 -9.95824 -9.68260 -9.39052 -8.97340 -8.85955 -8.51094 -7.71545 -6.88879 -5.71846 -3.01436 1.96619 2.25787 2.46305 3.46203 3.51697 3.54153 3.66455 3.81775 3.97296 4.42774 4.62743 4.92217 5.01084 5.17107 5.31551 5.40745 5.53691 5.59486 5.62178 5.75825 5.86415 6.13595 6.21480 6.29826 6.32920 6.50943 6.59898 6.67346 6.82518 7.13657 7.32975 7.43461 7.74051 7.87717 8.17835 8.45938 8.84669 9.57784 10.15235 10.50748 11.50392 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.005103 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.736813 B = 5486.002430 C = 6475.329216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.085 0.915 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.241 4.241 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.708 5.708 15 C 0.606 3.394 16 O -0.579 6.579 17 C -0.363 4.363 18 C 0.120 3.880 19 N -0.310 5.310 20 N -0.405 5.405 21 C 0.104 3.896 22 C 0.429 3.571 23 N -0.832 5.832 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.024 0.976 29 H 0.387 0.613 30 H 0.254 0.746 31 H 0.402 0.598 32 H 0.190 0.810 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.431 0.569 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 1.512 -15.405 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.103 0.897 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.372 4.372 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.357 5.357 15 C 0.396 3.604 16 O -0.461 6.461 17 C -0.383 4.383 18 C -0.070 4.070 19 N -0.129 5.129 20 N -0.193 5.193 21 C -0.038 4.038 22 C 0.195 3.805 23 N -0.382 5.382 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.221 0.779 30 H 0.064 0.936 31 H 0.236 0.764 32 H 0.207 0.793 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.268 0.732 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.423 1.336 -16.177 18.769 hybrid contribution 0.678 0.173 0.894 1.135 sum -8.745 1.509 -15.283 17.673 Atomic orbital electron populations 1.22099 0.95775 1.01734 1.01905 1.21174 0.93119 0.97953 0.84603 0.89660 1.20983 0.86839 0.96939 0.93658 1.42377 0.99778 1.70193 1.25293 1.19267 0.89426 1.29336 0.99203 0.91125 1.24745 0.96453 1.01630 0.98021 1.69692 1.07101 1.50826 1.30184 0.86138 0.79936 0.78750 0.81479 1.20570 1.21907 1.21955 1.45634 1.66958 1.14181 1.08903 1.16883 0.75984 0.85469 0.82032 1.90620 1.54090 1.15938 1.85501 1.19353 1.29577 0.95787 0.93567 1.23841 0.93605 0.94864 0.94641 1.77120 1.27904 1.02942 1.04915 1.48144 1.55332 1.06379 1.09455 1.21750 1.01529 1.04053 0.76460 1.18038 0.90103 0.82840 0.89529 1.41744 1.74264 1.06701 1.15497 0.92681 0.91912 0.92498 0.95045 0.95839 0.77879 0.93606 0.76364 0.79333 0.90861 0.88899 0.90356 0.73207 0.77569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 2 C 0.14 2.39 2.73 -67.93 -0.19 2.20 16 3 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 5 N -0.73 -18.49 5.43 -59.91 -0.33 -18.81 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 9 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 N -0.71 -12.13 4.51 -55.08 -0.25 -12.38 16 15 C 0.61 10.84 7.76 -12.81 -0.10 10.74 16 16 O -0.58 -11.27 14.80 5.20 0.08 -11.20 16 17 C -0.36 -5.89 6.15 -104.81 -0.64 -6.53 16 18 C 0.12 1.83 11.49 -16.97 -0.20 1.64 16 19 N -0.31 -4.71 12.47 30.88 0.38 -4.33 16 20 N -0.40 -5.19 4.00 -66.82 -0.27 -5.46 16 21 C 0.10 0.79 11.25 59.85 0.67 1.46 16 22 C 0.43 5.99 7.98 -153.79 -1.23 4.77 16 23 N -0.83 -8.98 9.02 31.40 0.28 -8.70 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.39 10.52 7.33 -40.82 -0.30 10.22 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.40 6.57 7.55 -40.82 -0.31 6.26 16 32 H 0.19 2.46 7.50 -52.48 -0.39 2.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.37 7.46 -51.93 -0.39 -0.02 16 36 H 0.43 5.24 7.01 -40.82 -0.29 4.95 16 37 H 0.40 2.76 8.04 -40.82 -0.33 2.43 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -34.97 317.92 -6.10 -41.07 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -4.90 Total: 17.36 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -1.60 Total: 7.90 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: 0.55 Total: -77.42 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.97 -6.10 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754265562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.161 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds