Wall clock time and date at job start Mon Mar 30 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.36937 * 119.99744 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99760 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99818 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46939 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46626 * 120.00150 * 10 8 6 13 13 H 1.48492 * 109.47324 * 240.00069 * 10 8 6 14 14 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 15 15 C 1.34770 * 120.00256 * 84.99846 * 14 2 1 16 16 O 1.21684 * 120.00380 * 359.97438 * 15 14 2 17 17 C 1.46776 * 119.99970 * 180.02562 * 15 14 2 18 18 C 1.41485 * 126.51869 * 359.68814 * 17 15 14 19 19 N 1.30282 * 108.18725 * 179.85296 * 18 17 15 20 20 N 1.39894 * 109.23429 * 0.41117 * 19 18 17 21 21 C 1.46500 * 125.74687 * 179.75628 * 20 19 18 22 22 C 1.34839 * 108.50736 * 359.73536 * 20 19 18 23 23 N 1.38006 * 126.44960 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 28 28 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 29 29 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 31 31 H 0.97005 * 119.99374 * 264.99912 * 14 2 1 32 32 H 1.08003 * 125.90451 * 0.02562 * 18 17 15 33 33 H 1.09004 * 109.47383 * 269.97191 * 21 20 19 34 34 H 1.09005 * 109.47243 * 29.97267 * 21 20 19 35 35 H 1.08998 * 109.47132 * 149.97426 * 21 20 19 36 36 H 0.97000 * 120.00625 * 179.97438 * 23 22 20 37 37 H 0.97003 * 120.00311 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4389 2.2066 7 1 3.6468 -1.8440 3.0515 8 6 5.5673 -1.5380 2.1513 9 7 6.2219 -1.0437 1.1219 10 14 6.5001 -2.3729 3.5378 11 1 5.5396 -2.8405 4.5693 12 1 7.2519 -3.5347 2.9991 13 1 7.4502 -1.4077 4.1467 14 7 2.0184 -0.6905 -1.1962 15 6 2.1471 -0.0181 -2.3571 16 8 1.8573 1.1625 -2.4119 17 6 2.6359 -0.7100 -3.5557 18 6 3.0153 -2.0700 -3.6469 19 7 3.3884 -2.3068 -4.8724 20 7 3.2808 -1.1307 -5.6223 21 6 3.6123 -0.9876 -7.0421 22 6 2.8202 -0.1511 -4.8184 23 7 2.5765 1.1586 -5.1787 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7517 -0.1584 2.1369 28 1 1.6055 -1.7199 1.2951 29 1 3.9825 -0.4621 0.4319 30 1 7.1887 -1.1127 1.0834 31 1 2.2491 -1.6317 -1.1527 32 1 2.9960 -2.7884 -2.8406 33 1 4.6598 -0.7037 -7.1439 34 1 3.4417 -1.9356 -7.5525 35 1 2.9823 -0.2172 -7.4865 36 1 2.2433 1.7887 -4.5208 37 1 2.7384 1.4491 -6.0899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754265562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:06 Heat of formation + Delta-G solvation = 21.034567 kcal Electronic energy + Delta-G solvation = -20328.460399 eV Core-core repulsion = 17141.421254 eV Total energy + Delta-G solvation = -3187.039145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.28254 -40.21230 -37.53437 -35.94005 -35.26199 -34.02310 -32.88831 -31.51223 -29.48182 -27.81017 -27.35348 -24.59017 -23.80448 -22.32544 -21.35320 -21.07452 -19.28744 -18.84049 -17.83812 -17.25533 -16.83341 -16.72000 -16.52326 -15.68390 -15.55258 -15.22791 -15.08853 -14.78477 -14.22496 -13.85160 -13.69419 -13.57997 -13.47203 -13.35258 -12.99098 -12.79310 -12.56092 -12.22630 -12.06532 -11.87848 -11.83054 -11.62367 -10.96835 -10.73078 -10.03742 -9.83090 -8.96524 -8.81579 -7.90428 -5.19838 0.86393 1.26583 1.33582 1.50398 1.50871 1.61084 2.49146 2.59989 2.67021 2.79890 3.43961 3.57333 3.89002 4.06943 4.12209 4.25890 4.39425 4.40540 4.52792 4.57471 4.66167 4.68109 4.89234 4.94509 5.01029 5.21742 5.38062 5.41950 5.54875 5.59044 5.77471 6.28400 6.30179 6.53449 6.75803 6.95188 7.37416 7.48867 8.12533 8.36037 9.32889 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.005103 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.736813 B = 5486.002430 C = 6475.329216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.143 3.857 3 H 0.059 0.941 4 C 0.145 3.855 5 N -0.744 5.744 6 C -0.241 4.241 7 H 0.080 0.920 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.972 3.028 11 H -0.263 1.263 12 H -0.294 1.294 13 H -0.298 1.298 14 N -0.707 5.707 15 C 0.601 3.399 16 O -0.603 6.603 17 C -0.396 4.396 18 C 0.114 3.886 19 N -0.329 5.329 20 N -0.400 5.400 21 C 0.090 3.910 22 C 0.430 3.570 23 N -0.815 5.815 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.374 0.626 30 H 0.249 0.751 31 H 0.405 0.595 32 H 0.199 0.801 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.427 0.573 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 1.130 -15.819 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.038 3.962 3 H 0.077 0.923 4 C 0.018 3.982 5 N -0.387 5.387 6 C -0.373 4.373 7 H 0.098 0.902 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.802 3.198 11 H -0.188 1.188 12 H -0.222 1.222 13 H -0.225 1.225 14 N -0.356 5.356 15 C 0.392 3.608 16 O -0.487 6.487 17 C -0.416 4.416 18 C -0.076 4.076 19 N -0.148 5.148 20 N -0.189 5.189 21 C -0.049 4.049 22 C 0.193 3.807 23 N -0.366 5.366 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.206 0.794 30 H 0.057 0.943 31 H 0.240 0.760 32 H 0.216 0.784 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.263 0.737 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.356 0.945 -16.612 19.598 hybrid contribution 0.900 0.341 0.939 1.345 sum -9.456 1.286 -15.673 18.350 Atomic orbital electron populations 1.21992 0.92845 1.02943 1.02508 1.21049 0.95200 0.96093 0.83835 0.92268 1.21143 0.83972 0.98025 0.95042 1.42564 1.01923 1.69867 1.24318 1.19698 0.89869 1.28104 0.99620 0.90194 1.25550 0.97546 1.03136 1.00469 1.69860 1.06856 1.52954 1.32367 0.85084 0.78509 0.77276 0.78944 1.18755 1.22160 1.22520 1.45609 1.66995 1.14245 1.08721 1.17172 0.75710 0.85315 0.82595 1.90590 1.55327 1.16811 1.85961 1.19400 1.31605 0.96542 0.94009 1.24028 0.93585 0.94870 0.95127 1.77031 1.28177 1.04469 1.05076 1.48451 1.54441 1.05246 1.10795 1.22213 1.03009 1.05867 0.73804 1.18115 0.89447 0.83912 0.89256 1.41696 1.73078 1.05360 1.16502 0.91126 0.90232 0.92947 0.94421 0.94213 0.79398 0.94261 0.76017 0.78388 0.89751 0.87915 0.87136 0.73717 0.75258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.48 71.98 0.68 -3.20 16 2 C 0.14 4.96 2.73 44.99 0.12 5.08 16 3 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 4 C 0.14 5.63 5.82 86.38 0.50 6.13 16 5 N -0.74 -37.63 5.43 -343.46 -1.87 -39.49 16 6 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 7 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 9 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 10 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 13 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 14 N -0.71 -24.37 4.51 -446.41 -2.01 -26.39 16 15 C 0.60 21.76 7.76 86.48 0.67 22.43 16 16 O -0.60 -23.77 14.80 -4.30 -0.06 -23.83 16 17 C -0.40 -12.88 6.15 -19.99 -0.12 -13.00 16 18 C 0.11 3.47 11.49 85.72 0.99 4.46 16 19 N -0.33 -9.81 12.47 -56.23 -0.70 -10.51 16 20 N -0.40 -9.73 4.00 -365.31 -1.46 -11.19 16 21 C 0.09 1.16 11.25 127.77 1.44 2.59 16 22 C 0.43 11.63 7.98 132.70 1.06 12.68 16 23 N -0.82 -16.49 9.02 -54.58 -0.49 -16.98 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.37 20.74 7.33 -92.71 -0.68 20.06 16 30 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.40 13.32 7.55 -92.70 -0.70 12.62 16 32 H 0.20 5.28 7.50 -2.91 -0.02 5.26 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.11 0.68 7.46 -2.39 -0.02 0.66 16 36 H 0.43 10.06 7.01 -92.71 -0.65 9.41 16 37 H 0.42 4.82 8.04 -92.71 -0.75 4.08 16 Total: -1.00 -75.12 317.92 0.72 -74.41 By element: Atomic # 1 Polarization: 46.50 SS G_CDS: -1.64 Total: 44.86 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.64 Total: 20.83 kcal Atomic # 7 Polarization: -158.39 SS G_CDS: -6.25 Total: -164.64 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.06 Total: -23.83 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.12 0.72 -74.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754265562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.443 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds