Wall clock time and date at job start Mon Mar 30 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47835 * 2 1 4 4 C 1.53007 * 109.47035 * 239.99925 * 2 1 3 5 5 N 1.46502 * 109.47248 * 185.00225 * 4 2 1 6 6 C 1.34773 * 120.00144 * 179.97438 * 5 4 2 7 7 O 1.21619 * 119.99801 * 4.49489 * 6 5 4 8 8 C 1.47227 * 120.00230 * 184.49605 * 6 5 4 9 9 C 1.37010 * 127.18659 * 5.09534 * 8 6 5 10 10 N 1.33324 * 106.37184 * 179.97438 * 9 8 6 11 11 N 1.28516 * 109.43724 * 359.77019 * 10 9 8 12 12 N 1.28711 * 110.63916 * 0.38656 * 11 10 9 13 13 C 1.46506 * 126.03580 * 179.88143 * 12 11 10 14 14 N 1.46494 * 109.47178 * 120.00243 * 2 1 3 15 15 C 1.46505 * 120.00267 * 59.99473 * 14 2 1 16 16 C 1.36941 * 120.00284 * 239.99941 * 14 2 1 17 17 H 1.08004 * 119.99503 * 327.87137 * 16 14 2 18 18 C 1.38811 * 120.00331 * 147.87365 * 16 14 2 19 19 N 1.31620 * 119.99830 * 156.51749 * 18 16 14 20 20 Si 1.86803 * 119.99960 * 336.51702 * 18 16 14 21 21 H 1.48500 * 109.46973 * 95.38939 * 20 18 16 22 22 H 1.48497 * 109.47016 * 215.38921 * 20 18 16 23 23 H 1.48499 * 109.47050 * 335.39086 * 20 18 16 24 24 H 1.08994 * 109.47039 * 300.00245 * 1 2 3 25 25 H 1.09002 * 109.46764 * 59.99495 * 1 2 3 26 26 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47090 * 64.99790 * 4 2 1 28 28 H 1.08998 * 109.47003 * 305.00200 * 4 2 1 29 29 H 0.97000 * 119.99873 * 359.97438 * 5 4 2 30 30 H 1.07999 * 126.81426 * 359.97438 * 9 8 6 31 31 H 1.09007 * 109.46767 * 263.89325 * 13 12 11 32 32 H 1.08996 * 109.47206 * 23.89005 * 13 12 11 33 33 H 1.08999 * 109.47181 * 143.89979 * 13 12 11 34 34 H 1.09006 * 109.47171 * 87.98401 * 15 14 2 35 35 H 1.08993 * 109.47306 * 207.98714 * 15 14 2 36 36 H 1.09003 * 109.47117 * 327.99049 * 15 14 2 37 37 H 0.97000 * 119.99748 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8265 -1.1906 6 6 4.1730 -1.4293 -2.1907 7 8 3.5777 -1.8130 -3.1794 8 6 5.6287 -1.6234 -2.0864 9 6 6.4268 -1.3399 -1.0094 10 7 7.6679 -1.6751 -1.3628 11 7 7.6608 -2.1381 -2.5617 12 7 6.4683 -2.1259 -3.0457 13 6 6.0766 -2.5758 -4.3839 14 7 2.0183 -0.6906 1.1961 15 6 1.6643 -2.0932 1.4280 16 6 2.8056 -0.0252 2.0975 17 1 3.4803 0.7470 1.7585 18 6 2.7367 -0.3432 3.4470 19 7 3.7549 -0.0794 4.2381 20 14 1.1987 -1.1457 4.1400 21 1 1.3815 -2.6190 4.1739 22 1 0.9568 -0.6451 5.5170 23 1 0.0353 -0.8108 3.2801 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.7516 -0.1584 -2.1370 28 1 1.6053 -1.7198 -1.2952 29 1 3.9824 -0.4623 -0.4320 30 1 6.1129 -0.9268 -0.0622 31 1 6.0323 -1.7192 -5.0566 32 1 6.8095 -3.2920 -4.7554 33 1 5.0967 -3.0506 -4.3353 34 1 2.3961 -2.7379 0.9411 35 1 1.6587 -2.2942 2.4992 36 1 0.6748 -2.2911 1.0159 37 1 3.7065 -0.3012 5.1812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755298737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:54 Heat of formation + Delta-G solvation = 94.418485 kcal Electronic energy + Delta-G solvation = -20819.056713 eV Core-core repulsion = 17635.199734 eV Total energy + Delta-G solvation = -3183.856979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.21405 -39.38770 -37.09048 -34.78905 -33.93089 -32.37526 -31.27483 -30.15043 -28.09974 -26.36435 -26.17810 -23.72246 -23.16794 -22.06993 -20.34392 -19.54558 -17.90005 -17.04613 -16.77460 -16.55046 -15.84350 -15.76084 -14.82792 -14.48075 -14.22948 -13.96240 -13.39205 -13.30536 -13.05641 -12.80822 -12.52382 -12.34162 -12.28157 -12.01476 -11.68403 -11.41261 -11.06758 -10.98417 -10.55354 -10.23099 -10.19217 -10.04308 -10.00675 -9.61136 -9.45805 -8.82400 -8.62167 -7.07179 -6.09942 -3.48498 0.99496 2.12053 2.38666 3.19152 3.24928 3.32301 3.41972 3.45053 4.40267 4.43149 4.57070 4.80005 4.84298 4.93082 5.13337 5.18758 5.27165 5.29904 5.59078 5.67596 5.84024 5.91135 6.01404 6.08486 6.09237 6.25430 6.38506 6.42188 6.52349 6.58792 6.66435 6.77821 7.66170 7.87202 8.19244 8.21698 8.40085 8.82580 9.59035 9.95957 11.04861 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.005800 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.711810 B = 4826.169659 C = 5713.887941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.081 0.919 4 C 0.110 3.890 5 N -0.686 5.686 6 C 0.591 3.409 7 O -0.555 6.555 8 C -0.069 4.069 9 C 0.012 3.988 10 N -0.273 5.273 11 N -0.068 5.068 12 N -0.260 5.260 13 C 0.081 3.919 14 N -0.605 5.605 15 C 0.110 3.890 16 C -0.279 4.279 17 H 0.084 0.916 18 C 0.036 3.964 19 N -0.895 5.895 20 Si 0.885 3.115 21 H -0.289 1.289 22 H -0.305 1.305 23 H -0.271 1.271 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.417 0.583 30 H 0.205 0.795 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.016 0.984 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -2.556 -13.785 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.099 0.901 4 C -0.015 4.015 5 N -0.337 5.337 6 C 0.375 3.625 7 O -0.434 6.434 8 C -0.203 4.203 9 C -0.149 4.149 10 N -0.136 5.136 11 N -0.049 5.049 12 N -0.057 5.057 13 C -0.060 4.060 14 N -0.329 5.329 15 C -0.035 4.035 16 C -0.406 4.406 17 H 0.102 0.898 18 C -0.165 4.165 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.196 1.196 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.255 0.745 30 H 0.222 0.778 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.007 -3.175 -14.585 14.927 hybrid contribution -1.805 -0.175 1.095 2.118 sum -1.798 -3.350 -13.490 14.016 Atomic orbital electron populations 1.22208 0.97249 1.01423 1.01293 1.20748 0.92484 0.96187 0.85818 0.90110 1.22034 0.78377 1.01459 0.99652 1.45630 1.08621 1.56801 1.22598 1.16676 0.83514 0.78716 0.83632 1.90748 1.69457 1.52202 1.31037 1.22032 0.94809 1.11375 0.92110 1.24152 0.88735 1.01931 1.00064 1.74906 1.20861 1.13748 1.04109 1.78235 1.02289 1.18075 1.06309 1.47581 1.05233 1.39327 1.13597 1.22460 1.03942 1.02228 0.77395 1.44200 1.58985 1.06620 1.23103 1.21305 0.96883 0.85866 0.99411 1.18783 1.15003 1.20255 0.86600 0.89805 1.25348 0.96805 0.98274 0.96102 1.69859 1.28693 1.49228 1.05741 0.86872 0.86141 0.77843 0.77438 1.21730 1.23336 1.19604 0.91995 0.93217 0.93141 0.91640 0.91852 0.74511 0.77780 0.88926 0.88146 0.86897 0.96566 0.93753 0.94988 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.17 37.16 0.34 -2.08 16 2 C 0.16 2.57 2.88 -67.93 -0.20 2.38 16 3 H 0.08 1.35 7.89 -51.93 -0.41 0.94 16 4 C 0.11 1.65 4.97 -4.04 -0.02 1.63 16 5 N -0.69 -10.52 5.37 -61.45 -0.33 -10.85 16 6 C 0.59 9.17 7.80 -12.61 -0.10 9.07 16 7 O -0.55 -9.30 14.98 5.26 0.08 -9.22 16 8 C -0.07 -1.04 6.98 -82.33 -0.57 -1.62 16 9 C 0.01 0.18 11.54 -17.35 -0.20 -0.02 16 10 N -0.27 -4.60 12.35 30.48 0.38 -4.22 16 11 N -0.07 -1.07 13.14 60.35 0.79 -0.27 16 12 N -0.26 -3.62 3.79 -64.11 -0.24 -3.86 16 13 C 0.08 0.77 10.82 59.85 0.65 1.41 16 14 N -0.60 -12.38 1.94 -173.48 -0.34 -12.71 16 15 C 0.11 2.20 8.66 59.85 0.52 2.72 16 16 C -0.28 -6.82 9.61 -15.06 -0.14 -6.96 16 17 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 18 C 0.04 0.96 5.31 -17.43 -0.09 0.86 16 19 N -0.89 -25.51 13.97 55.49 0.78 -24.74 16 20 Si 0.89 21.17 24.88 -169.99 -4.23 16.94 16 21 H -0.29 -6.83 6.65 56.52 0.38 -6.45 16 22 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.74 6.67 -51.93 -0.35 0.39 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 29 H 0.42 6.61 6.96 -40.82 -0.28 6.33 16 30 H 0.21 2.89 7.59 -52.49 -0.40 2.49 16 31 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.13 6.68 -51.93 -0.35 0.78 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.99 2.72 -51.93 -0.14 0.85 16 36 H 0.03 0.57 6.43 -51.93 -0.33 0.23 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -30.31 307.02 -3.10 -33.41 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.79 Total: 3.50 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 0.18 Total: 7.40 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 1.03 Total: -56.65 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.23 Total: 16.94 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.31 -3.10 -33.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755298737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.828 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds