Wall clock time and date at job start Mon Mar 30 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47835 * 2 1 4 4 C 1.53007 * 109.47035 * 239.99925 * 2 1 3 5 5 N 1.46502 * 109.47248 * 185.00225 * 4 2 1 6 6 C 1.34773 * 120.00144 * 179.97438 * 5 4 2 7 7 O 1.21619 * 119.99801 * 4.49489 * 6 5 4 8 8 C 1.47227 * 120.00230 * 184.49605 * 6 5 4 9 9 C 1.37010 * 127.18659 * 5.09534 * 8 6 5 10 10 N 1.33324 * 106.37184 * 179.97438 * 9 8 6 11 11 N 1.28516 * 109.43724 * 359.77019 * 10 9 8 12 12 N 1.28711 * 110.63916 * 0.38656 * 11 10 9 13 13 C 1.46506 * 126.03580 * 179.88143 * 12 11 10 14 14 N 1.46494 * 109.47178 * 120.00243 * 2 1 3 15 15 C 1.46505 * 120.00267 * 59.99473 * 14 2 1 16 16 C 1.36941 * 120.00284 * 239.99941 * 14 2 1 17 17 H 1.08004 * 119.99503 * 327.87137 * 16 14 2 18 18 C 1.38811 * 120.00331 * 147.87365 * 16 14 2 19 19 N 1.31620 * 119.99830 * 156.51749 * 18 16 14 20 20 Si 1.86803 * 119.99960 * 336.51702 * 18 16 14 21 21 H 1.48500 * 109.46973 * 95.38939 * 20 18 16 22 22 H 1.48497 * 109.47016 * 215.38921 * 20 18 16 23 23 H 1.48499 * 109.47050 * 335.39086 * 20 18 16 24 24 H 1.08994 * 109.47039 * 300.00245 * 1 2 3 25 25 H 1.09002 * 109.46764 * 59.99495 * 1 2 3 26 26 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47090 * 64.99790 * 4 2 1 28 28 H 1.08998 * 109.47003 * 305.00200 * 4 2 1 29 29 H 0.97000 * 119.99873 * 359.97438 * 5 4 2 30 30 H 1.07999 * 126.81426 * 359.97438 * 9 8 6 31 31 H 1.09007 * 109.46767 * 263.89325 * 13 12 11 32 32 H 1.08996 * 109.47206 * 23.89005 * 13 12 11 33 33 H 1.08999 * 109.47181 * 143.89979 * 13 12 11 34 34 H 1.09006 * 109.47171 * 87.98401 * 15 14 2 35 35 H 1.08993 * 109.47306 * 207.98714 * 15 14 2 36 36 H 1.09003 * 109.47117 * 327.99049 * 15 14 2 37 37 H 0.97000 * 119.99748 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8265 -1.1906 6 6 4.1730 -1.4293 -2.1907 7 8 3.5777 -1.8130 -3.1794 8 6 5.6287 -1.6234 -2.0864 9 6 6.4268 -1.3399 -1.0094 10 7 7.6679 -1.6751 -1.3628 11 7 7.6608 -2.1381 -2.5617 12 7 6.4683 -2.1259 -3.0457 13 6 6.0766 -2.5758 -4.3839 14 7 2.0183 -0.6906 1.1961 15 6 1.6643 -2.0932 1.4280 16 6 2.8056 -0.0252 2.0975 17 1 3.4803 0.7470 1.7585 18 6 2.7367 -0.3432 3.4470 19 7 3.7549 -0.0794 4.2381 20 14 1.1987 -1.1457 4.1400 21 1 1.3815 -2.6190 4.1739 22 1 0.9568 -0.6451 5.5170 23 1 0.0353 -0.8108 3.2801 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.7516 -0.1584 -2.1370 28 1 1.6053 -1.7198 -1.2952 29 1 3.9824 -0.4623 -0.4320 30 1 6.1129 -0.9268 -0.0622 31 1 6.0323 -1.7192 -5.0566 32 1 6.8095 -3.2920 -4.7554 33 1 5.0967 -3.0506 -4.3353 34 1 2.3961 -2.7379 0.9411 35 1 1.6587 -2.2942 2.4992 36 1 0.6748 -2.2911 1.0159 37 1 3.7065 -0.3012 5.1812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755298737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:54 Heat of formation + Delta-G solvation = 72.097665 kcal Electronic energy + Delta-G solvation = -20820.024616 eV Core-core repulsion = 17635.199734 eV Total energy + Delta-G solvation = -3184.824883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.38212 -40.64945 -38.56863 -35.95710 -35.28112 -34.01512 -32.64252 -31.63179 -29.04982 -28.04109 -27.40750 -25.25739 -24.55023 -23.24031 -21.55023 -20.94095 -19.15077 -18.80840 -17.90541 -17.71946 -17.54711 -17.02417 -16.28669 -15.74721 -15.55345 -15.21211 -14.96566 -14.35235 -14.25595 -14.20361 -14.00741 -13.86912 -13.66543 -13.23022 -13.00349 -12.79705 -12.56411 -12.27468 -12.22210 -11.95795 -11.56036 -11.48663 -11.31220 -11.21669 -10.66353 -10.57322 -10.04218 -8.83757 -8.12188 -5.44304 -0.17683 1.08495 1.16540 1.34997 1.47608 1.55800 1.97618 2.16587 2.47972 3.13183 3.28248 3.37020 3.47435 3.72380 3.98945 4.02931 4.23332 4.37285 4.52896 4.53132 4.58034 4.61902 4.74864 4.83438 4.86433 4.91723 5.00446 5.06848 5.27615 5.32589 5.35413 5.53644 5.97071 6.22644 6.40697 6.95235 7.02651 7.20934 7.69276 8.09172 9.06323 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.005800 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.711810 B = 4826.169659 C = 5713.887941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.688 5.688 6 C 0.597 3.403 7 O -0.565 6.565 8 C -0.075 4.075 9 C 0.008 3.992 10 N -0.302 5.302 11 N -0.075 5.075 12 N -0.250 5.250 13 C 0.071 3.929 14 N -0.612 5.612 15 C 0.108 3.892 16 C -0.247 4.247 17 H 0.066 0.934 18 C -0.022 4.022 19 N -0.944 5.944 20 Si 0.938 3.062 21 H -0.287 1.287 22 H -0.322 1.322 23 H -0.257 1.257 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.414 0.586 30 H 0.209 0.791 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.060 0.940 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -3.075 -16.035 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.096 0.904 4 C -0.007 4.007 5 N -0.337 5.337 6 C 0.381 3.619 7 O -0.445 6.445 8 C -0.210 4.210 9 C -0.153 4.153 10 N -0.164 5.164 11 N -0.056 5.056 12 N -0.048 5.048 13 C -0.068 4.068 14 N -0.337 5.337 15 C -0.036 4.036 16 C -0.376 4.376 17 H 0.084 0.916 18 C -0.218 4.218 19 N -0.589 5.589 20 Si 0.770 3.230 21 H -0.215 1.215 22 H -0.252 1.252 23 H -0.181 1.181 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.251 0.749 30 H 0.226 0.774 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.562 -3.709 -16.901 17.373 hybrid contribution -1.314 0.001 1.613 2.081 sum -2.877 -3.708 -15.288 15.992 Atomic orbital electron populations 1.22120 0.95260 1.02039 1.02114 1.20898 0.93911 0.95863 0.84519 0.90386 1.21971 0.77933 1.01488 0.99310 1.45667 1.08912 1.56724 1.22430 1.16613 0.83503 0.78392 0.83381 1.90743 1.69667 1.52717 1.31365 1.21994 0.94719 1.11847 0.92422 1.24274 0.88570 1.01920 1.00546 1.74877 1.21689 1.14948 1.04914 1.78168 1.03022 1.18304 1.06099 1.47942 1.04505 1.37881 1.14490 1.22847 1.04596 1.03690 0.75679 1.44265 1.59001 1.07059 1.23349 1.21325 0.98590 0.85478 0.98202 1.18788 1.13768 1.18231 0.86839 0.91639 1.25869 0.98768 1.00319 0.96892 1.69978 1.30526 1.52694 1.05709 0.85997 0.83853 0.77062 0.76049 1.21533 1.25174 1.18143 0.93696 0.89921 0.92589 0.89603 0.91809 0.74933 0.77394 0.87015 0.85488 0.87113 0.96139 0.95899 0.92199 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 9.17 71.98 0.66 -3.41 16 2 C 0.15 4.68 2.88 44.99 0.13 4.81 16 3 H 0.08 2.43 7.89 -2.39 -0.02 2.41 16 4 C 0.12 3.15 4.97 86.38 0.43 3.57 16 5 N -0.69 -19.74 5.37 -466.56 -2.51 -22.25 16 6 C 0.60 17.37 7.80 86.61 0.68 18.04 16 7 O -0.56 -17.47 14.98 -4.09 -0.06 -17.53 16 8 C -0.08 -2.17 6.98 40.41 0.28 -1.89 16 9 C 0.01 0.25 11.54 84.18 0.97 1.22 16 10 N -0.30 -10.09 12.35 -57.50 -0.71 -10.80 16 11 N -0.08 -2.27 13.14 37.02 0.49 -1.79 16 12 N -0.25 -6.54 3.79 -356.76 -1.35 -7.90 16 13 C 0.07 1.17 10.82 127.77 1.38 2.55 16 14 N -0.61 -23.92 1.94 -702.77 -1.36 -25.29 16 15 C 0.11 4.09 8.66 127.77 1.11 5.19 16 16 C -0.25 -12.00 9.61 84.03 0.81 -11.19 16 17 H 0.07 3.39 8.06 -2.91 -0.02 3.37 16 18 C -0.02 -1.18 5.31 84.86 0.45 -0.73 16 19 N -0.94 -55.32 13.97 21.65 0.30 -55.01 16 20 Si 0.94 43.83 24.88 68.60 1.71 45.54 16 21 H -0.29 -13.14 6.65 99.48 0.66 -12.47 16 22 H -0.32 -15.77 7.11 99.48 0.71 -15.07 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.41 6.67 -2.39 -0.02 1.39 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 1.75 7.84 -2.39 -0.02 1.73 16 29 H 0.41 12.67 6.96 -92.71 -0.65 12.02 16 30 H 0.21 5.96 7.59 -2.91 -0.02 5.94 16 31 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.95 6.68 -2.39 -0.02 1.93 16 34 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.02 0.98 2.72 -2.39 -0.01 0.97 16 36 H 0.06 1.92 6.43 -2.39 -0.02 1.90 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -64.62 307.02 3.80 -60.81 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.41 Total: 16.03 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.89 Total: 18.18 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.14 Total: -123.03 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.06 Total: -17.53 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.71 Total: 45.54 kcal Total: -64.62 3.80 -60.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755298737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.912 kcal (2) G-P(sol) polarization free energy of solvation -64.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds