Wall clock time and date at job start Mon Mar 30 2020 00:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.47348 * 2 1 4 4 C 1.53000 * 109.47247 * 119.99696 * 2 1 3 5 5 N 1.46497 * 109.47291 * 174.99994 * 4 2 1 6 6 C 1.34778 * 120.00032 * 180.02562 * 5 4 2 7 7 O 1.21616 * 119.99975 * 4.53404 * 6 5 4 8 8 C 1.47231 * 120.00352 * 184.80635 * 6 5 4 9 9 C 1.37007 * 127.18586 * 354.50362 * 8 6 5 10 10 N 1.33322 * 106.37427 * 179.97438 * 9 8 6 11 11 N 1.28513 * 109.43689 * 359.97438 * 10 9 8 12 12 N 1.28720 * 110.63640 * 359.71624 * 11 10 9 13 13 C 1.46498 * 126.03337 * 180.30715 * 12 11 10 14 14 N 1.46501 * 109.47145 * 239.99832 * 2 1 3 15 15 C 1.46497 * 119.99898 * 299.99984 * 14 2 1 16 16 C 1.36940 * 120.00002 * 120.00151 * 14 2 1 17 17 H 1.08008 * 119.99828 * 23.69427 * 16 14 2 18 18 C 1.38803 * 120.00011 * 203.69744 * 16 14 2 19 19 N 1.31626 * 120.00174 * 11.22405 * 18 16 14 20 20 Si 1.86806 * 120.00185 * 191.22594 * 18 16 14 21 21 H 1.48504 * 109.46719 * 59.99865 * 20 18 16 22 22 H 1.48494 * 109.47308 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46919 * 300.00334 * 20 18 16 24 24 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47307 * 300.00598 * 1 2 3 26 26 H 1.09001 * 109.46986 * 59.99976 * 1 2 3 27 27 H 1.08996 * 109.46927 * 54.99981 * 4 2 1 28 28 H 1.09003 * 109.47302 * 295.00376 * 4 2 1 29 29 H 0.96996 * 120.00092 * 0.02562 * 5 4 2 30 30 H 1.07999 * 126.81590 * 0.02562 * 9 8 6 31 31 H 1.08999 * 109.47732 * 272.71581 * 13 12 11 32 32 H 1.09000 * 109.47238 * 32.72099 * 13 12 11 33 33 H 1.09000 * 109.46863 * 152.71344 * 13 12 11 34 34 H 1.09003 * 109.47028 * 95.07980 * 15 14 2 35 35 H 1.09003 * 109.46793 * 215.07319 * 15 14 2 36 36 H 1.08995 * 109.47217 * 335.07624 * 15 14 2 37 37 H 0.96995 * 119.99871 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4291 2.1908 7 8 3.5642 -1.9581 3.1010 8 6 5.6452 -1.4419 2.1846 9 6 6.4731 -0.9832 1.1940 10 7 7.7194 -1.1957 1.6174 11 7 7.6887 -1.7429 2.7798 12 7 6.4737 -1.9081 3.1715 13 6 6.0512 -2.4947 4.4457 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4279 16 6 2.8056 -0.0252 -2.0976 17 1 3.3776 0.8353 -1.7830 18 6 2.8685 -0.4564 -3.4154 19 7 2.0146 -1.3567 -3.8547 20 14 4.1649 0.2407 -4.5656 21 1 5.5163 -0.0560 -4.0260 22 1 4.0210 -0.3790 -5.9073 23 1 3.9884 1.7109 -4.6772 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1370 29 1 3.9824 -0.4621 0.4320 30 1 6.1754 -0.5373 0.2565 31 1 5.9801 -3.5774 4.3415 32 1 6.7812 -2.2512 5.2176 33 1 5.0780 -2.0920 4.7261 34 1 0.7885 -2.1448 -2.0747 35 1 2.4998 -2.6044 -1.9063 36 1 1.4415 -2.5739 -0.4754 37 1 2.0588 -1.6583 -4.7755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755298738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:57 Heat of formation + Delta-G solvation = 86.968962 kcal Electronic energy + Delta-G solvation = -20782.224076 eV Core-core repulsion = 17598.044061 eV Total energy + Delta-G solvation = -3184.180015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.25469 -39.35080 -36.84686 -34.79138 -33.88135 -32.33626 -31.16216 -29.37925 -28.12212 -26.13187 -26.08482 -23.61684 -23.05899 -22.09415 -20.33453 -19.44804 -17.87861 -17.00915 -16.79540 -16.56410 -15.71494 -15.39313 -14.64836 -14.46042 -14.05083 -13.92616 -13.41054 -13.08609 -12.87973 -12.83395 -12.41875 -12.11833 -12.04412 -11.49847 -11.19958 -11.07923 -10.86917 -10.80105 -10.47921 -10.36811 -10.23057 -9.98211 -9.98029 -9.85596 -9.49096 -8.76573 -8.63476 -6.86714 -5.80923 -3.30761 0.97208 2.09601 2.33948 3.20085 3.32817 3.33953 3.39705 3.41146 4.35945 4.40405 4.56678 4.77880 4.92569 5.08361 5.26113 5.28292 5.34677 5.47153 5.57281 5.80877 5.96332 6.01102 6.10557 6.18041 6.35159 6.35402 6.61056 6.71603 6.77073 6.91628 7.31819 7.65524 7.68848 7.73187 8.23023 8.30685 8.36094 9.13784 9.76207 10.25633 11.22852 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.006222 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.847332 B = 4499.421952 C = 5680.742281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.070 0.930 4 C 0.107 3.893 5 N -0.683 5.683 6 C 0.589 3.411 7 O -0.553 6.553 8 C -0.064 4.064 9 C 0.006 3.994 10 N -0.274 5.274 11 N -0.069 5.069 12 N -0.259 5.259 13 C 0.079 3.921 14 N -0.594 5.594 15 C 0.164 3.836 16 C -0.268 4.268 17 H 0.069 0.931 18 C 0.009 3.991 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.283 1.283 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.414 0.586 30 H 0.202 0.798 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.030 0.970 35 H 0.040 0.960 36 H -0.002 1.002 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 0.223 12.900 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.089 0.911 4 C -0.018 4.018 5 N -0.334 5.334 6 C 0.372 3.628 7 O -0.433 6.433 8 C -0.199 4.199 9 C -0.155 4.155 10 N -0.137 5.137 11 N -0.049 5.049 12 N -0.056 5.056 13 C -0.062 4.062 14 N -0.317 5.317 15 C 0.019 3.981 16 C -0.397 4.397 17 H 0.087 0.913 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.208 1.208 22 H -0.217 1.217 23 H -0.209 1.209 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.252 0.748 30 H 0.219 0.781 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.017 0.983 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.878 -0.425 13.734 14.277 hybrid contribution -0.330 0.470 -1.385 1.499 sum 3.548 0.044 12.349 12.849 Atomic orbital electron populations 1.22180 0.97256 1.01448 1.00691 1.20635 0.92743 0.95581 0.86296 0.91133 1.22101 0.78133 1.01825 0.99779 1.45614 1.08786 1.56896 1.22059 1.16682 0.83583 0.79313 0.83192 1.90748 1.69264 1.46450 1.36820 1.22071 0.94698 1.10223 0.92872 1.24056 0.88428 1.02238 1.00734 1.74887 1.21363 1.13916 1.03548 1.78229 1.01284 1.16295 1.09132 1.47584 1.04345 1.38410 1.15281 1.22497 1.03557 1.00217 0.79916 1.43983 1.58166 1.08006 1.21515 1.20745 0.99901 0.83300 0.94115 1.19138 1.19101 1.12335 0.89122 0.91310 1.25061 0.98184 0.99100 0.96685 1.70049 1.35707 1.33153 1.15672 0.86386 0.81555 0.78590 0.80289 1.20789 1.21685 1.20905 0.93113 0.93945 0.92078 0.91529 0.92001 0.74806 0.78079 0.88808 0.88292 0.86631 0.95135 0.94108 0.98348 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.19 37.16 0.34 -2.21 16 2 C 0.16 2.76 2.87 -67.93 -0.19 2.56 16 3 H 0.07 1.23 7.87 -51.92 -0.41 0.82 16 4 C 0.11 1.70 4.94 -4.04 -0.02 1.68 16 5 N -0.68 -10.72 5.38 -61.45 -0.33 -11.05 16 6 C 0.59 9.27 7.79 -12.61 -0.10 9.17 16 7 O -0.55 -9.51 14.88 5.26 0.08 -9.43 16 8 C -0.06 -0.96 6.98 -82.34 -0.57 -1.53 16 9 C 0.01 0.09 11.54 -17.35 -0.20 -0.11 16 10 N -0.27 -4.45 12.35 30.47 0.38 -4.08 16 11 N -0.07 -1.05 13.14 60.35 0.79 -0.26 16 12 N -0.26 -3.56 3.79 -64.12 -0.24 -3.81 16 13 C 0.08 0.75 10.94 59.85 0.65 1.40 16 14 N -0.59 -12.98 2.28 -173.48 -0.40 -13.38 16 15 C 0.16 3.74 8.00 59.85 0.48 4.22 16 16 C -0.27 -6.49 9.31 -15.06 -0.14 -6.63 16 17 H 0.07 1.58 7.82 -52.48 -0.41 1.17 16 18 C 0.01 0.24 5.14 -17.43 -0.09 0.15 16 19 N -0.90 -24.82 10.65 55.49 0.59 -24.23 16 20 Si 0.90 20.50 29.57 -169.99 -5.03 15.47 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.14 6.86 -51.93 -0.36 0.78 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.41 6.55 6.92 -40.82 -0.28 6.27 16 30 H 0.20 2.57 7.56 -52.49 -0.40 2.18 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.12 1.15 6.44 -51.93 -0.33 0.82 16 34 H 0.03 0.77 7.33 -51.93 -0.38 0.39 16 35 H 0.04 1.02 7.34 -51.93 -0.38 0.64 16 36 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 37 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -29.85 311.45 -4.24 -34.09 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.94 Total: 3.28 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 0.16 Total: 8.69 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.79 Total: -56.80 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.85 -4.24 -34.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755298738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.060 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds