Wall clock time and date at job start Mon Mar 30 2020 00:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.47348 * 2 1 4 4 C 1.53000 * 109.47247 * 119.99696 * 2 1 3 5 5 N 1.46497 * 109.47291 * 174.99994 * 4 2 1 6 6 C 1.34778 * 120.00032 * 180.02562 * 5 4 2 7 7 O 1.21616 * 119.99975 * 4.53404 * 6 5 4 8 8 C 1.47231 * 120.00352 * 184.80635 * 6 5 4 9 9 C 1.37007 * 127.18586 * 354.50362 * 8 6 5 10 10 N 1.33322 * 106.37427 * 179.97438 * 9 8 6 11 11 N 1.28513 * 109.43689 * 359.97438 * 10 9 8 12 12 N 1.28720 * 110.63640 * 359.71624 * 11 10 9 13 13 C 1.46498 * 126.03337 * 180.30715 * 12 11 10 14 14 N 1.46501 * 109.47145 * 239.99832 * 2 1 3 15 15 C 1.46497 * 119.99898 * 299.99984 * 14 2 1 16 16 C 1.36940 * 120.00002 * 120.00151 * 14 2 1 17 17 H 1.08008 * 119.99828 * 23.69427 * 16 14 2 18 18 C 1.38803 * 120.00011 * 203.69744 * 16 14 2 19 19 N 1.31626 * 120.00174 * 11.22405 * 18 16 14 20 20 Si 1.86806 * 120.00185 * 191.22594 * 18 16 14 21 21 H 1.48504 * 109.46719 * 59.99865 * 20 18 16 22 22 H 1.48494 * 109.47308 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46919 * 300.00334 * 20 18 16 24 24 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47307 * 300.00598 * 1 2 3 26 26 H 1.09001 * 109.46986 * 59.99976 * 1 2 3 27 27 H 1.08996 * 109.46927 * 54.99981 * 4 2 1 28 28 H 1.09003 * 109.47302 * 295.00376 * 4 2 1 29 29 H 0.96996 * 120.00092 * 0.02562 * 5 4 2 30 30 H 1.07999 * 126.81590 * 0.02562 * 9 8 6 31 31 H 1.08999 * 109.47732 * 272.71581 * 13 12 11 32 32 H 1.09000 * 109.47238 * 32.72099 * 13 12 11 33 33 H 1.09000 * 109.46863 * 152.71344 * 13 12 11 34 34 H 1.09003 * 109.47028 * 95.07980 * 15 14 2 35 35 H 1.09003 * 109.46793 * 215.07319 * 15 14 2 36 36 H 1.08995 * 109.47217 * 335.07624 * 15 14 2 37 37 H 0.96995 * 119.99871 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4291 2.1908 7 8 3.5642 -1.9581 3.1010 8 6 5.6452 -1.4419 2.1846 9 6 6.4731 -0.9832 1.1940 10 7 7.7194 -1.1957 1.6174 11 7 7.6887 -1.7429 2.7798 12 7 6.4737 -1.9081 3.1715 13 6 6.0512 -2.4947 4.4457 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4279 16 6 2.8056 -0.0252 -2.0976 17 1 3.3776 0.8353 -1.7830 18 6 2.8685 -0.4564 -3.4154 19 7 2.0146 -1.3567 -3.8547 20 14 4.1649 0.2407 -4.5656 21 1 5.5163 -0.0560 -4.0260 22 1 4.0210 -0.3790 -5.9073 23 1 3.9884 1.7109 -4.6772 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1370 29 1 3.9824 -0.4621 0.4320 30 1 6.1754 -0.5373 0.2565 31 1 5.9801 -3.5774 4.3415 32 1 6.7812 -2.2512 5.2176 33 1 5.0780 -2.0920 4.7261 34 1 0.7885 -2.1448 -2.0747 35 1 2.4998 -2.6044 -1.9063 36 1 1.4415 -2.5739 -0.4754 37 1 2.0588 -1.6583 -4.7755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755298738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:56 Heat of formation + Delta-G solvation = 66.184073 kcal Electronic energy + Delta-G solvation = -20783.125376 eV Core-core repulsion = 17598.044061 eV Total energy + Delta-G solvation = -3185.081315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.37963 -40.63147 -38.38890 -35.93934 -35.27420 -33.89568 -32.43733 -31.04455 -29.05226 -27.97008 -27.38453 -25.06089 -24.53920 -23.23975 -21.54755 -20.91989 -19.11908 -18.74514 -17.89363 -17.71687 -17.11774 -16.93155 -16.14240 -15.65577 -15.57780 -15.20719 -14.57710 -14.46478 -14.25501 -13.97980 -13.82701 -13.51993 -13.22057 -13.00050 -12.82383 -12.60067 -12.49119 -12.29556 -12.21618 -12.07086 -11.75474 -11.47131 -11.30958 -11.21666 -10.65865 -10.56561 -10.01831 -8.72555 -7.74810 -5.24124 -0.16861 1.08432 1.17299 1.54239 1.56439 1.60528 1.99083 2.16374 2.56557 3.29681 3.41174 3.46153 3.69186 3.73059 4.01415 4.07853 4.23093 4.40669 4.52817 4.62070 4.64288 4.75648 4.80938 4.91511 4.96480 5.09301 5.28761 5.32235 5.33167 5.45711 5.55208 5.74357 5.81040 6.39939 6.43342 6.99250 7.20961 7.22799 7.93726 8.38967 9.28003 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.006222 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.847332 B = 4499.421952 C = 5680.742281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.155 3.845 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.684 5.684 6 C 0.595 3.405 7 O -0.567 6.567 8 C -0.075 4.075 9 C 0.007 3.993 10 N -0.301 5.301 11 N -0.076 5.076 12 N -0.251 5.251 13 C 0.070 3.930 14 N -0.602 5.602 15 C 0.183 3.817 16 C -0.256 4.256 17 H 0.085 0.915 18 C -0.049 4.049 19 N -0.939 5.939 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.307 1.307 23 H -0.277 1.277 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.414 0.586 30 H 0.216 0.784 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.000 1.000 35 H 0.011 0.989 36 H 0.022 0.978 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 1.075 14.736 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.097 0.903 4 C -0.008 4.008 5 N -0.334 5.334 6 C 0.379 3.621 7 O -0.448 6.448 8 C -0.209 4.209 9 C -0.154 4.154 10 N -0.163 5.163 11 N -0.057 5.057 12 N -0.049 5.049 13 C -0.069 4.069 14 N -0.326 5.326 15 C 0.038 3.962 16 C -0.386 4.386 17 H 0.103 0.897 18 C -0.244 4.244 19 N -0.586 5.586 20 Si 0.787 3.213 21 H -0.200 1.200 22 H -0.234 1.234 23 H -0.203 1.203 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.252 0.748 30 H 0.233 0.767 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.019 0.981 35 H 0.030 0.970 36 H 0.040 0.960 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.280 0.452 15.622 16.204 hybrid contribution -0.480 0.212 -1.815 1.889 sum 3.800 0.664 13.807 14.336 Atomic orbital electron populations 1.22071 0.96039 1.01296 1.01434 1.20829 0.93619 0.95770 0.85047 0.90292 1.21946 0.78135 1.01226 0.99456 1.45598 1.08733 1.56964 1.22089 1.16672 0.83809 0.78825 0.82802 1.90743 1.69640 1.47062 1.37333 1.21986 0.94321 1.11122 0.93487 1.24336 0.88019 1.01801 1.01231 1.74866 1.22192 1.14996 1.04218 1.78172 1.01919 1.16521 1.09082 1.47931 1.03736 1.37264 1.15929 1.22851 1.04256 1.00865 0.78964 1.44126 1.58296 1.07827 1.22317 1.20386 0.97371 0.84163 0.94261 1.19575 1.18243 1.11630 0.89102 0.89729 1.25724 1.00125 1.00158 0.98405 1.70223 1.37774 1.35315 1.15259 0.85481 0.79915 0.77963 0.77899 1.19996 1.23421 1.20268 0.93751 0.90285 0.94188 0.92604 0.89608 0.74834 0.76708 0.87394 0.85444 0.86889 0.98121 0.96997 0.96006 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.19 71.98 0.66 -3.88 16 2 C 0.15 5.09 2.87 44.99 0.13 5.22 16 3 H 0.08 2.50 7.87 -2.38 -0.02 2.48 16 4 C 0.12 3.40 4.94 86.38 0.43 3.82 16 5 N -0.68 -19.92 5.38 -466.58 -2.51 -22.42 16 6 C 0.59 17.48 7.79 86.61 0.68 18.16 16 7 O -0.57 -18.22 14.88 -4.08 -0.06 -18.28 16 8 C -0.07 -2.08 6.98 40.41 0.28 -1.80 16 9 C 0.01 0.20 11.54 84.18 0.97 1.17 16 10 N -0.30 -9.41 12.35 -57.50 -0.71 -10.12 16 11 N -0.08 -2.22 13.14 37.02 0.49 -1.73 16 12 N -0.25 -6.41 3.79 -356.78 -1.35 -7.77 16 13 C 0.07 1.16 10.94 127.77 1.40 2.55 16 14 N -0.60 -25.74 2.28 -702.78 -1.61 -27.34 16 15 C 0.18 8.40 8.00 127.77 1.02 9.42 16 16 C -0.26 -12.11 9.31 84.03 0.78 -11.33 16 17 H 0.09 3.70 7.82 -2.91 -0.02 3.67 16 18 C -0.05 -2.52 5.14 84.86 0.44 -2.08 16 19 N -0.94 -52.88 10.65 21.65 0.23 -52.65 16 20 Si 0.96 42.21 29.57 68.60 2.03 44.23 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.31 -14.24 7.11 99.48 0.71 -13.54 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 24 H 0.04 1.40 7.67 -2.39 -0.02 1.38 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.41 12.22 6.92 -92.71 -0.64 11.58 16 30 H 0.22 5.16 7.56 -2.91 -0.02 5.14 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 2.00 6.44 -2.39 -0.02 1.98 16 34 H 0.00 0.02 7.33 -2.39 -0.02 0.01 16 35 H 0.01 0.58 7.34 -2.39 -0.02 0.56 16 36 H 0.02 0.87 6.53 -2.39 -0.02 0.86 16 37 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -63.60 311.45 3.74 -59.86 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.45 Total: 14.97 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 6.78 Total: 21.26 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.46 Total: -122.04 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.06 Total: -18.28 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -63.60 3.74 -59.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755298738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.045 kcal (2) G-P(sol) polarization free energy of solvation -63.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds