Wall clock time and date at job start Mon Mar 30 2020 00:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46976 * 2 1 4 4 C 1.53001 * 109.46970 * 119.99988 * 2 1 3 5 5 N 1.46498 * 109.46956 * 174.99759 * 4 2 1 6 6 C 1.34778 * 120.00105 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99755 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99885 * 180.02562 * 6 5 4 9 9 N 1.46499 * 109.46805 * 179.97438 * 8 6 5 10 10 C 1.34435 * 126.82319 * 124.99735 * 9 8 6 11 11 N 1.30833 * 108.07750 * 179.97438 * 10 9 8 12 12 C 1.33239 * 109.82809 * 359.97438 * 11 10 9 13 13 N 1.30708 * 108.94657 * 0.26399 * 12 11 10 14 14 N 1.46503 * 109.46913 * 239.99875 * 2 1 3 15 15 C 1.46497 * 120.00260 * 300.00190 * 14 2 1 16 16 C 1.36938 * 119.99645 * 120.00144 * 14 2 1 17 17 H 1.07997 * 120.00274 * 22.82235 * 16 14 2 18 18 C 1.38815 * 119.99828 * 202.82117 * 16 14 2 19 19 N 1.31614 * 119.99973 * 11.58546 * 18 16 14 20 20 Si 1.86799 * 120.00093 * 191.58835 * 18 16 14 21 21 H 1.48505 * 109.46979 * 59.99527 * 20 18 16 22 22 H 1.48493 * 109.47124 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47005 * 300.00103 * 20 18 16 24 24 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46901 * 299.99906 * 1 2 3 26 26 H 1.09007 * 109.47322 * 59.99923 * 1 2 3 27 27 H 1.08997 * 109.46813 * 55.00007 * 4 2 1 28 28 H 1.09000 * 109.47283 * 294.99979 * 4 2 1 29 29 H 0.97008 * 120.00284 * 0.02562 * 5 4 2 30 30 H 1.08997 * 109.47406 * 60.00389 * 8 6 5 31 31 H 1.09000 * 109.47276 * 300.00003 * 8 6 5 32 32 H 1.07997 * 125.95951 * 359.97438 * 10 9 8 33 33 H 1.08005 * 125.52158 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.47140 * 93.85032 * 15 14 2 35 35 H 1.09001 * 109.47311 * 213.85470 * 15 14 2 36 36 H 1.09004 * 109.46751 * 333.84931 * 15 14 2 37 37 H 0.97005 * 120.00235 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4293 2.1907 7 8 3.5698 -1.8850 3.1390 8 6 5.6749 -1.5369 2.1305 9 7 6.1632 -2.2276 3.3266 10 6 6.9394 -3.3247 3.3631 11 7 7.1545 -3.6283 4.6174 12 6 6.5353 -2.7518 5.4072 13 7 5.9102 -1.8777 4.6630 14 7 2.0183 -0.6907 -1.1962 15 6 1.6643 -2.0932 -1.4281 16 6 2.8056 -0.0251 -2.0976 17 1 3.3666 0.8437 -1.7865 18 6 2.8826 -0.4673 -3.4112 19 7 2.0366 -1.3746 -3.8508 20 14 4.1869 0.2255 -4.5549 21 1 5.5343 -0.0610 -4.0003 22 1 4.0581 -0.4060 -5.8927 23 1 4.0055 1.6941 -4.6807 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6053 -1.7198 1.2951 28 1 1.7516 -0.1583 2.1370 29 1 3.9824 -0.4622 0.4319 30 1 6.1093 -0.5382 2.0854 31 1 5.9636 -2.0992 1.2425 32 1 7.3191 -3.8617 2.5065 33 1 6.5442 -2.7646 6.4871 34 1 0.7756 -2.1444 -2.0570 35 1 2.4915 -2.5992 -1.9260 36 1 1.4626 -2.5795 -0.4736 37 1 2.0901 -1.6834 -4.7688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755325060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:44 Heat of formation + Delta-G solvation = 84.879927 kcal Electronic energy + Delta-G solvation = -20402.884824 eV Core-core repulsion = 17218.614222 eV Total energy + Delta-G solvation = -3184.270602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05358 -39.39752 -36.84078 -34.00649 -33.89016 -32.11254 -31.18825 -29.51004 -28.36094 -26.11733 -25.41829 -23.15595 -22.20066 -21.97897 -20.19351 -19.39696 -17.42762 -17.17082 -16.96875 -15.82499 -15.50709 -15.32019 -14.87653 -14.63945 -14.15681 -14.03134 -13.56238 -13.06928 -12.82385 -12.75086 -12.32766 -12.06154 -11.79104 -11.50650 -11.15692 -10.90468 -10.84188 -10.50911 -10.38239 -10.21533 -10.03783 -9.99672 -9.88048 -9.76313 -9.41952 -8.70657 -8.65168 -6.90238 -5.84961 -3.33036 1.61642 2.17431 2.74030 2.97825 3.27130 3.32993 3.35370 3.40317 4.28135 4.35646 4.46660 4.78551 4.90794 4.91205 5.26559 5.27878 5.33139 5.50282 5.82519 6.02499 6.11774 6.16380 6.22202 6.36916 6.42709 6.66692 6.68962 6.75853 6.77415 6.93989 7.28955 7.61136 7.69437 7.81350 8.06086 8.26145 8.43114 9.10409 9.73158 10.23085 11.19396 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.004771 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.190091 B = 5867.036245 C = 6705.251105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.109 3.891 5 N -0.701 5.701 6 C 0.495 3.505 7 O -0.529 6.529 8 C 0.109 3.891 9 N -0.364 5.364 10 C 0.253 3.747 11 N -0.549 5.549 12 C 0.186 3.814 13 N -0.289 5.289 14 N -0.594 5.594 15 C 0.166 3.834 16 C -0.265 4.265 17 H 0.069 0.931 18 C 0.007 3.993 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.411 0.589 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.219 0.781 33 H 0.215 0.785 34 H 0.027 0.973 35 H 0.042 0.958 36 H -0.003 1.003 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -0.142 9.508 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.353 5.353 6 C 0.278 3.722 7 O -0.405 6.405 8 C -0.018 4.018 9 N -0.155 5.155 10 C -0.043 4.043 11 N -0.276 5.276 12 C -0.117 4.117 13 N -0.116 5.116 14 N -0.317 5.317 15 C 0.021 3.979 16 C -0.395 4.395 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.210 1.210 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.248 0.752 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.235 0.765 33 H 0.231 0.769 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.188 -0.196 10.321 12.035 hybrid contribution 0.760 0.405 -1.523 1.750 sum 6.948 0.209 8.798 11.212 Atomic orbital electron populations 1.22183 0.97407 1.01403 1.00638 1.20624 0.92655 0.95506 0.86348 0.91294 1.21971 0.78940 1.01383 0.99370 1.45803 1.08628 1.58188 1.22697 1.20282 0.88883 0.79553 0.83474 1.90759 1.69322 1.47388 1.33064 1.21652 0.94368 1.00705 0.85055 1.49993 1.37473 1.22417 1.05636 1.26072 0.92786 0.87872 0.97605 1.70508 1.27893 1.28903 1.00288 1.25979 0.94249 0.90193 1.01237 1.78173 1.22273 1.24592 0.86542 1.43995 1.58196 1.08043 1.21511 1.20718 0.99840 0.83322 0.93981 1.19152 1.19330 1.11555 0.89440 0.91358 1.25047 0.98349 0.99198 0.96624 1.70058 1.35965 1.32810 1.15848 0.86362 0.81384 0.78582 0.80269 1.21080 1.21669 1.20952 0.93168 0.93947 0.92152 0.92066 0.92370 0.75236 0.86428 0.84995 0.76483 0.76907 0.95464 0.93881 0.98456 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.19 37.16 0.34 -2.33 16 2 C 0.16 2.85 2.87 -67.93 -0.19 2.66 16 3 H 0.07 1.23 7.86 -51.93 -0.41 0.83 16 4 C 0.11 1.82 4.93 -4.04 -0.02 1.80 16 5 N -0.70 -10.78 5.39 -60.29 -0.32 -11.11 16 6 C 0.50 7.62 7.87 -10.98 -0.09 7.53 16 7 O -0.53 -10.40 15.73 5.56 0.09 -10.31 16 8 C 0.11 1.19 7.03 -5.19 -0.04 1.15 16 9 N -0.36 -4.77 3.41 -63.81 -0.22 -4.98 16 10 C 0.25 2.88 12.63 -90.65 -1.14 1.74 16 11 N -0.55 -7.34 11.19 -15.83 -0.18 -7.52 16 12 C 0.19 2.47 13.03 -91.82 -1.20 1.27 16 13 N -0.29 -4.44 11.81 29.29 0.35 -4.09 16 14 N -0.59 -13.02 2.29 -173.48 -0.40 -13.42 16 15 C 0.17 3.78 8.00 59.85 0.48 4.26 16 16 C -0.27 -6.38 9.33 -15.06 -0.14 -6.52 16 17 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 19 N -0.90 -24.56 10.63 55.49 0.59 -23.97 16 20 Si 0.90 19.97 29.57 -169.99 -5.03 14.94 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.12 6.86 -51.93 -0.36 0.76 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.41 6.11 7.89 -40.82 -0.32 5.78 16 30 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.13 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.22 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.21 2.01 8.06 -52.48 -0.42 1.58 16 34 H 0.03 0.69 7.43 -51.93 -0.39 0.30 16 35 H 0.04 1.06 7.20 -51.93 -0.37 0.68 16 36 H 0.00 -0.06 6.53 -51.93 -0.34 -0.40 16 37 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -33.06 315.68 -7.54 -40.60 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.09 Total: 3.44 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -2.09 Total: 11.66 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.18 Total: -65.09 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.06 -7.54 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.481 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds