Wall clock time and date at job start Mon Mar 30 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46976 * 2 1 4 4 C 1.53001 * 109.46970 * 119.99988 * 2 1 3 5 5 N 1.46498 * 109.46956 * 174.99759 * 4 2 1 6 6 C 1.34778 * 120.00105 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99755 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99885 * 180.02562 * 6 5 4 9 9 N 1.46499 * 109.46805 * 179.97438 * 8 6 5 10 10 C 1.34435 * 126.82319 * 124.99735 * 9 8 6 11 11 N 1.30833 * 108.07750 * 179.97438 * 10 9 8 12 12 C 1.33239 * 109.82809 * 359.97438 * 11 10 9 13 13 N 1.30708 * 108.94657 * 0.26399 * 12 11 10 14 14 N 1.46503 * 109.46913 * 239.99875 * 2 1 3 15 15 C 1.46497 * 120.00260 * 300.00190 * 14 2 1 16 16 C 1.36938 * 119.99645 * 120.00144 * 14 2 1 17 17 H 1.07997 * 120.00274 * 22.82235 * 16 14 2 18 18 C 1.38815 * 119.99828 * 202.82117 * 16 14 2 19 19 N 1.31614 * 119.99973 * 11.58546 * 18 16 14 20 20 Si 1.86799 * 120.00093 * 191.58835 * 18 16 14 21 21 H 1.48505 * 109.46979 * 59.99527 * 20 18 16 22 22 H 1.48493 * 109.47124 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47005 * 300.00103 * 20 18 16 24 24 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46901 * 299.99906 * 1 2 3 26 26 H 1.09007 * 109.47322 * 59.99923 * 1 2 3 27 27 H 1.08997 * 109.46813 * 55.00007 * 4 2 1 28 28 H 1.09000 * 109.47283 * 294.99979 * 4 2 1 29 29 H 0.97008 * 120.00284 * 0.02562 * 5 4 2 30 30 H 1.08997 * 109.47406 * 60.00389 * 8 6 5 31 31 H 1.09000 * 109.47276 * 300.00003 * 8 6 5 32 32 H 1.07997 * 125.95951 * 359.97438 * 10 9 8 33 33 H 1.08005 * 125.52158 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.47140 * 93.85032 * 15 14 2 35 35 H 1.09001 * 109.47311 * 213.85470 * 15 14 2 36 36 H 1.09004 * 109.46751 * 333.84931 * 15 14 2 37 37 H 0.97005 * 120.00235 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4293 2.1907 7 8 3.5698 -1.8850 3.1390 8 6 5.6749 -1.5369 2.1305 9 7 6.1632 -2.2276 3.3266 10 6 6.9394 -3.3247 3.3631 11 7 7.1545 -3.6283 4.6174 12 6 6.5353 -2.7518 5.4072 13 7 5.9102 -1.8777 4.6630 14 7 2.0183 -0.6907 -1.1962 15 6 1.6643 -2.0932 -1.4281 16 6 2.8056 -0.0251 -2.0976 17 1 3.3666 0.8437 -1.7865 18 6 2.8826 -0.4673 -3.4112 19 7 2.0366 -1.3746 -3.8508 20 14 4.1869 0.2255 -4.5549 21 1 5.5343 -0.0610 -4.0003 22 1 4.0581 -0.4060 -5.8927 23 1 4.0055 1.6941 -4.6807 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6053 -1.7198 1.2951 28 1 1.7516 -0.1583 2.1370 29 1 3.9824 -0.4622 0.4319 30 1 6.1093 -0.5382 2.0854 31 1 5.9636 -2.0992 1.2425 32 1 7.3191 -3.8617 2.5065 33 1 6.5442 -2.7646 6.4871 34 1 0.7756 -2.1444 -2.0570 35 1 2.4915 -2.5992 -1.9260 36 1 1.4626 -2.5795 -0.4736 37 1 2.0901 -1.6834 -4.7688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755325060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:43 Heat of formation + Delta-G solvation = 63.684903 kcal Electronic energy + Delta-G solvation = -20403.803909 eV Core-core repulsion = 17218.614222 eV Total energy + Delta-G solvation = -3185.189687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.97621 -40.65768 -38.41478 -35.43721 -34.95622 -33.71624 -32.14049 -31.19735 -29.41489 -27.99517 -26.68471 -24.90056 -23.21885 -22.86894 -21.40290 -20.91001 -18.85018 -18.39271 -18.21540 -17.19189 -16.74533 -16.64574 -16.14268 -15.74143 -15.62950 -15.06000 -14.79118 -14.61415 -14.38206 -14.04539 -13.76905 -13.40327 -13.04557 -12.84252 -12.77659 -12.60149 -12.48362 -12.29700 -12.09467 -11.76770 -11.51451 -11.32431 -10.99990 -10.74986 -10.58114 -10.49256 -9.98822 -8.75734 -7.75957 -5.24725 0.70868 1.32245 1.55001 1.55864 1.58038 1.62139 2.04828 2.28332 2.56420 3.40046 3.54629 3.58197 3.65818 3.80569 4.05108 4.10317 4.16798 4.35210 4.43537 4.60160 4.71869 4.75602 4.92709 5.04351 5.23721 5.25640 5.35983 5.41999 5.50575 5.56720 5.71606 5.77484 5.87700 6.37855 6.60676 7.13641 7.19833 7.25282 7.91346 8.37862 9.27771 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.004771 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.190091 B = 5867.036245 C = 6705.251105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.077 0.923 4 C 0.121 3.879 5 N -0.699 5.699 6 C 0.494 3.506 7 O -0.576 6.576 8 C 0.112 3.888 9 N -0.374 5.374 10 C 0.261 3.739 11 N -0.575 5.575 12 C 0.184 3.816 13 N -0.336 5.336 14 N -0.602 5.602 15 C 0.187 3.813 16 C -0.257 4.257 17 H 0.085 0.915 18 C -0.050 4.050 19 N -0.941 5.941 20 Si 0.965 3.035 21 H -0.269 1.269 22 H -0.308 1.308 23 H -0.280 1.280 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.416 0.584 30 H 0.143 0.857 31 H 0.172 0.828 32 H 0.263 0.737 33 H 0.238 0.762 34 H -0.004 1.004 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 0.607 9.917 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.096 0.904 4 C -0.006 4.006 5 N -0.350 5.350 6 C 0.279 3.721 7 O -0.455 6.455 8 C -0.013 4.013 9 N -0.165 5.165 10 C -0.035 4.035 11 N -0.303 5.303 12 C -0.119 4.119 13 N -0.163 5.163 14 N -0.325 5.325 15 C 0.042 3.958 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.245 4.245 19 N -0.588 5.588 20 Si 0.794 3.206 21 H -0.194 1.194 22 H -0.235 1.235 23 H -0.207 1.207 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.253 0.747 30 H 0.161 0.839 31 H 0.189 0.811 32 H 0.279 0.721 33 H 0.254 0.746 34 H 0.014 0.986 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.839 0.593 10.750 13.318 hybrid contribution 0.221 0.184 -1.582 1.608 sum 8.060 0.777 9.168 12.232 Atomic orbital electron populations 1.22089 0.96533 1.01103 1.01282 1.20763 0.93305 0.95652 0.85222 0.90448 1.21707 0.79978 1.00190 0.98680 1.45774 1.08043 1.58209 1.23004 1.21014 0.90757 0.78081 0.82272 1.90743 1.70786 1.49251 1.34734 1.21888 0.90754 1.02916 0.85723 1.50114 1.37957 1.23113 1.05340 1.26981 0.91261 0.86907 0.98318 1.70535 1.28880 1.29540 1.01337 1.26532 0.93325 0.89596 1.02445 1.78093 1.23956 1.26265 0.87994 1.44134 1.58313 1.07860 1.22198 1.20351 0.97450 0.84154 0.93867 1.19582 1.18591 1.11076 0.89435 0.89748 1.25758 1.00352 1.00070 0.98316 1.70245 1.38070 1.34918 1.15538 0.85378 0.79878 0.77644 0.77671 1.19430 1.23468 1.20655 0.93982 0.90769 0.93966 0.93807 0.91437 0.74692 0.83916 0.81092 0.72128 0.74597 0.98594 0.96183 0.96651 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.19 71.98 0.66 -4.27 16 2 C 0.16 5.45 2.87 44.99 0.13 5.58 16 3 H 0.08 2.57 7.86 -2.39 -0.02 2.55 16 4 C 0.12 3.83 4.93 86.38 0.43 4.26 16 5 N -0.70 -20.00 5.39 -463.06 -2.49 -22.49 16 6 C 0.49 14.23 7.87 87.66 0.69 14.92 16 7 O -0.58 -22.16 15.73 -3.03 -0.05 -22.21 16 8 C 0.11 2.11 7.03 85.63 0.60 2.71 16 9 N -0.37 -8.94 3.41 -355.80 -1.21 -10.16 16 10 C 0.26 5.23 12.63 180.36 2.28 7.51 16 11 N -0.58 -14.41 11.19 -204.00 -2.28 -16.69 16 12 C 0.18 4.68 13.03 180.77 2.36 7.03 16 13 N -0.34 -9.97 11.81 -61.25 -0.72 -10.69 16 14 N -0.60 -25.78 2.29 -702.77 -1.61 -27.39 16 15 C 0.19 8.56 8.00 127.77 1.02 9.58 16 16 C -0.26 -11.96 9.33 84.03 0.78 -11.18 16 17 H 0.08 3.62 7.81 -2.91 -0.02 3.59 16 18 C -0.05 -2.50 5.12 84.86 0.43 -2.07 16 19 N -0.94 -52.01 10.63 21.65 0.23 -51.78 16 20 Si 0.97 40.46 29.57 68.60 2.03 42.49 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.31 -13.65 7.11 99.48 0.71 -12.95 16 23 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 24 H 0.04 1.43 7.67 -2.39 -0.02 1.41 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.04 1.56 6.86 -2.39 -0.02 1.54 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.42 11.21 7.89 -92.70 -0.73 10.48 16 30 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.17 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.26 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.24 4.25 8.06 -2.91 -0.02 4.22 16 34 H 0.00 -0.22 7.43 -2.39 -0.02 -0.24 16 35 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 36 H 0.02 0.63 6.53 -2.39 -0.02 0.61 16 37 H 0.24 13.43 8.31 -92.70 -0.77 12.66 16 Total: -1.00 -72.65 315.68 3.62 -69.03 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.35 Total: 15.83 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: 9.38 Total: 34.07 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -8.09 Total: -139.20 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -72.65 3.62 -69.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755325060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.710 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds