Wall clock time and date at job start Mon Mar 30 2020 00:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99840 * 2 1 4 4 H 1.48497 * 109.46975 * 239.99873 * 3 2 1 5 5 H 1.48501 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47129 * 119.99564 * 3 2 1 7 7 C 1.37869 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00781 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99892 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49714 * 59.93511 * 9 7 2 11 11 C 1.53039 * 109.49942 * 299.84070 * 9 7 2 12 12 C 1.53033 * 109.53957 * 178.68242 * 11 9 7 13 13 C 1.52763 * 109.38763 * 61.23706 * 12 11 9 14 14 N 1.46922 * 109.00723 * 305.59300 * 13 12 11 15 15 C 1.34778 * 120.63253 * 233.58072 * 14 13 12 16 16 O 1.21276 * 120.00546 * 184.92365 * 15 14 13 17 17 C 1.50707 * 119.99780 * 4.91950 * 15 14 13 18 18 H 1.09008 * 109.51954 * 35.66652 * 17 15 14 19 19 C 1.53183 * 109.57776 * 155.75459 * 17 15 14 20 20 C 1.53174 * 109.03342 * 176.85617 * 19 17 15 21 21 C 1.53090 * 109.21488 * 303.12005 * 20 19 17 22 22 O 1.42902 * 109.41680 * 57.57644 * 21 20 19 23 23 C 1.42905 * 114.09307 * 298.83929 * 22 21 20 24 24 C 1.46933 * 118.74315 * 53.30342 * 14 13 12 25 25 H 0.97001 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.45570 * 298.70410 * 11 9 7 27 27 H 1.08996 * 109.46150 * 58.67463 * 11 9 7 28 28 H 1.09000 * 109.50195 * 181.31594 * 12 11 9 29 29 H 1.09004 * 109.50021 * 301.40954 * 12 11 9 30 30 H 1.09003 * 109.51599 * 185.70710 * 13 12 11 31 31 H 1.09002 * 109.43148 * 65.41916 * 13 12 11 32 32 H 1.09003 * 109.49423 * 57.02228 * 19 17 15 33 33 H 1.09002 * 109.59801 * 296.75605 * 19 17 15 34 34 H 1.08996 * 109.52385 * 183.17907 * 20 19 17 35 35 H 1.08997 * 109.52043 * 63.05552 * 20 19 17 36 36 H 1.09000 * 109.47906 * 177.56245 * 21 20 19 37 37 H 1.09000 * 109.48009 * 297.57974 * 21 20 19 38 38 H 1.09010 * 109.47538 * 181.14305 * 23 22 21 39 39 H 1.09003 * 109.48453 * 301.17511 * 23 22 21 40 40 H 1.09000 * 109.58378 * 66.43152 * 24 14 13 41 41 H 1.09002 * 109.58865 * 186.85863 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6238 -2.5570 -0.8890 11 6 0.3736 -2.5823 1.2516 12 6 -0.4167 -3.8927 1.2361 13 6 0.5551 -5.0712 1.2475 14 7 1.5002 -4.9229 0.1324 15 6 1.6755 -5.9207 -0.7566 16 8 2.5218 -5.8223 -1.6196 17 6 0.8197 -7.1587 -0.6781 18 1 -0.1875 -6.8859 -0.3630 19 6 0.7601 -7.8295 -2.0540 20 6 -0.0466 -9.1269 -1.9427 21 6 0.5922 -10.0280 -0.8827 22 8 0.6435 -9.3318 0.3643 23 6 1.4251 -8.1358 0.3330 24 6 2.2462 -3.6639 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 1.0040 -2.5489 2.1401 27 1 -0.3191 -1.7409 1.2659 28 1 -1.0589 -3.9407 2.1155 29 1 -1.0288 -3.9378 0.3352 30 1 -0.0003 -6.0023 1.1344 31 1 1.1016 -5.0815 2.1906 32 1 1.7711 -8.0567 -2.3921 33 1 0.2778 -7.1602 -2.7664 34 1 -0.0466 -9.6395 -2.9046 35 1 -1.0716 -8.8948 -1.6537 36 1 -0.0032 -10.9339 -0.7690 37 1 1.6028 -10.2938 -1.1927 38 1 1.4296 -7.6786 1.3225 39 1 2.4467 -8.3767 0.0390 40 1 2.9333 -3.5571 0.8405 41 1 2.8061 -3.6667 -0.9341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260044580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:18 Heat of formation + Delta-G solvation = -100.407043 kcal Electronic energy + Delta-G solvation = -21397.402926 eV Core-core repulsion = 18276.345270 eV Total energy + Delta-G solvation = -3121.057656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34751 -38.65926 -36.79682 -33.75642 -33.46142 -31.72769 -31.19558 -30.00001 -25.56360 -25.04243 -24.98218 -23.53926 -21.73263 -20.86603 -19.52470 -18.35803 -16.99246 -16.46778 -16.28773 -16.09284 -15.26499 -15.02845 -14.66232 -14.10616 -13.85867 -13.72213 -13.38696 -13.07506 -12.77650 -12.76886 -12.48622 -12.12873 -11.98223 -11.62065 -11.20047 -11.08955 -10.96070 -10.84244 -10.75527 -10.52312 -10.28999 -9.97608 -9.85895 -9.71762 -9.48852 -9.21340 -8.84955 -8.40336 -7.93154 -6.03721 -4.11097 2.94709 3.30366 3.34789 3.36402 3.43647 3.76017 4.41016 4.56291 4.68841 4.76567 4.83146 4.98254 5.09646 5.22915 5.26497 5.36302 5.45439 5.58817 5.60746 5.63073 5.72521 5.77161 5.85504 6.03434 6.10981 6.21821 6.31111 6.37182 6.46158 6.63582 6.78113 6.93271 6.97767 7.14347 7.30883 7.66717 7.88606 7.97857 8.05156 8.34951 8.59530 8.92291 9.53966 11.01783 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.004427 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.604315 B = 6323.853775 C = 6558.076835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.105 3.895 14 N -0.601 5.601 15 C 0.515 3.485 16 O -0.549 6.549 17 C -0.145 4.145 18 H 0.101 0.899 19 C -0.105 4.105 20 C -0.155 4.155 21 C 0.058 3.942 22 O -0.378 6.378 23 C 0.075 3.925 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 -16.560 1.311 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.018 4.018 14 N -0.332 5.332 15 C 0.302 3.698 16 O -0.428 6.428 17 C -0.166 4.166 18 H 0.119 0.881 19 C -0.142 4.142 20 C -0.193 4.193 21 C -0.019 4.019 22 O -0.297 6.297 23 C -0.003 4.003 24 C -0.004 4.004 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.646 -16.431 1.030 16.545 hybrid contribution 0.410 1.173 -0.192 1.257 sum -1.236 -15.258 0.838 15.331 Atomic orbital electron populations 1.69863 1.05902 1.26616 1.50395 1.24930 0.94855 0.99075 0.94881 0.86635 0.79590 0.82963 0.78687 1.20227 1.21296 1.20233 1.21036 0.92967 0.90287 1.51126 0.92522 1.18969 0.92943 0.91157 0.94799 0.95336 1.21628 0.99449 0.95376 0.98575 1.21935 0.97713 0.96706 1.01052 1.21759 0.91508 0.99324 0.89243 1.48341 1.41899 1.16041 1.26951 1.20256 0.83897 0.84236 0.81403 1.90650 1.35356 1.80540 1.36253 1.22001 1.01205 0.94667 0.98750 0.88117 1.21431 1.01610 0.96038 0.95166 1.22210 1.00495 0.96769 0.99816 1.22620 1.00286 0.94728 0.84274 1.87945 1.72221 1.37279 1.32239 1.22476 0.94032 0.84532 0.99210 1.22019 0.95114 0.81813 1.01491 0.92901 0.94533 0.88633 0.92340 0.92419 0.90790 0.91753 0.90551 0.90976 0.90573 0.90941 0.88848 0.93062 0.88299 0.92428 0.92646 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.91 8.56 -34.44 -0.29 -14.21 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 12 C -0.14 -2.39 6.06 -26.84 -0.16 -2.55 16 13 C 0.10 1.60 5.81 -3.93 -0.02 1.58 16 14 N -0.60 -11.00 2.98 -173.02 -0.52 -11.52 16 15 C 0.52 9.19 6.81 -10.98 -0.07 9.12 16 16 O -0.55 -11.69 15.47 5.56 0.09 -11.60 16 17 C -0.14 -1.96 1.85 -91.63 -0.17 -2.13 16 18 H 0.10 1.30 6.53 -51.92 -0.34 0.96 16 19 C -0.10 -1.31 4.90 -26.55 -0.13 -1.44 16 20 C -0.16 -1.48 6.13 -26.59 -0.16 -1.64 16 21 C 0.06 0.54 6.84 37.20 0.25 0.80 16 22 O -0.38 -4.49 10.77 -35.23 -0.38 -4.87 16 23 C 0.07 0.91 5.93 37.20 0.22 1.13 16 24 C 0.12 2.51 5.64 -3.71 -0.02 2.49 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 2.41 6.05 -51.93 -0.31 2.10 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.94 5.05 -51.93 -0.26 0.67 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.02 7.77 -51.93 -0.40 0.62 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.10 1.11 7.28 -51.92 -0.38 0.73 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.82 7.04 -51.93 -0.37 1.45 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -29.88 315.94 -8.11 -37.99 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.68 Total: 0.50 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.00 Total: -7.06 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.11 Total: -35.73 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.29 Total: -16.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.88 -8.11 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260044580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.414 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds