Wall clock time and date at job start Mon Mar 30 2020 00:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99840 * 2 1 4 4 H 1.48497 * 109.46975 * 239.99873 * 3 2 1 5 5 H 1.48501 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47129 * 119.99564 * 3 2 1 7 7 C 1.37869 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00781 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99892 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49714 * 59.93511 * 9 7 2 11 11 C 1.53039 * 109.49942 * 299.84070 * 9 7 2 12 12 C 1.53033 * 109.53957 * 178.68242 * 11 9 7 13 13 C 1.52763 * 109.38763 * 61.23706 * 12 11 9 14 14 N 1.46922 * 109.00723 * 305.59300 * 13 12 11 15 15 C 1.34778 * 120.63253 * 233.58072 * 14 13 12 16 16 O 1.21276 * 120.00546 * 184.92365 * 15 14 13 17 17 C 1.50707 * 119.99780 * 4.91950 * 15 14 13 18 18 H 1.09008 * 109.51954 * 35.66652 * 17 15 14 19 19 C 1.53183 * 109.57776 * 155.75459 * 17 15 14 20 20 C 1.53174 * 109.03342 * 176.85617 * 19 17 15 21 21 C 1.53090 * 109.21488 * 303.12005 * 20 19 17 22 22 O 1.42902 * 109.41680 * 57.57644 * 21 20 19 23 23 C 1.42905 * 114.09307 * 298.83929 * 22 21 20 24 24 C 1.46933 * 118.74315 * 53.30342 * 14 13 12 25 25 H 0.97001 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.45570 * 298.70410 * 11 9 7 27 27 H 1.08996 * 109.46150 * 58.67463 * 11 9 7 28 28 H 1.09000 * 109.50195 * 181.31594 * 12 11 9 29 29 H 1.09004 * 109.50021 * 301.40954 * 12 11 9 30 30 H 1.09003 * 109.51599 * 185.70710 * 13 12 11 31 31 H 1.09002 * 109.43148 * 65.41916 * 13 12 11 32 32 H 1.09003 * 109.49423 * 57.02228 * 19 17 15 33 33 H 1.09002 * 109.59801 * 296.75605 * 19 17 15 34 34 H 1.08996 * 109.52385 * 183.17907 * 20 19 17 35 35 H 1.08997 * 109.52043 * 63.05552 * 20 19 17 36 36 H 1.09000 * 109.47906 * 177.56245 * 21 20 19 37 37 H 1.09000 * 109.48009 * 297.57974 * 21 20 19 38 38 H 1.09010 * 109.47538 * 181.14305 * 23 22 21 39 39 H 1.09003 * 109.48453 * 301.17511 * 23 22 21 40 40 H 1.09000 * 109.58378 * 66.43152 * 24 14 13 41 41 H 1.09002 * 109.58865 * 186.85863 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6238 -2.5570 -0.8890 11 6 0.3736 -2.5823 1.2516 12 6 -0.4167 -3.8927 1.2361 13 6 0.5551 -5.0712 1.2475 14 7 1.5002 -4.9229 0.1324 15 6 1.6755 -5.9207 -0.7566 16 8 2.5218 -5.8223 -1.6196 17 6 0.8197 -7.1587 -0.6781 18 1 -0.1875 -6.8859 -0.3630 19 6 0.7601 -7.8295 -2.0540 20 6 -0.0466 -9.1269 -1.9427 21 6 0.5922 -10.0280 -0.8827 22 8 0.6435 -9.3318 0.3643 23 6 1.4251 -8.1358 0.3330 24 6 2.2462 -3.6639 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 1.0040 -2.5489 2.1401 27 1 -0.3191 -1.7409 1.2659 28 1 -1.0589 -3.9407 2.1155 29 1 -1.0288 -3.9378 0.3352 30 1 -0.0003 -6.0023 1.1344 31 1 1.1016 -5.0815 2.1906 32 1 1.7711 -8.0567 -2.3921 33 1 0.2778 -7.1602 -2.7664 34 1 -0.0466 -9.6395 -2.9046 35 1 -1.0716 -8.8948 -1.6537 36 1 -0.0032 -10.9339 -0.7690 37 1 1.6028 -10.2938 -1.1927 38 1 1.4296 -7.6786 1.3225 39 1 2.4467 -8.3767 0.0390 40 1 2.9333 -3.5571 0.8405 41 1 2.8061 -3.6667 -0.9341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260044580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:17 Heat of formation + Delta-G solvation = -118.861292 kcal Electronic energy + Delta-G solvation = -21398.203162 eV Core-core repulsion = 18276.345270 eV Total energy + Delta-G solvation = -3121.857892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62671 -39.78545 -38.37125 -35.43840 -34.62258 -33.21765 -32.51909 -31.58799 -27.21789 -26.58441 -25.98161 -24.74709 -23.37228 -22.05682 -20.92642 -19.82414 -18.61996 -17.99410 -17.45029 -17.16540 -16.66788 -16.45229 -16.06937 -15.36320 -15.17682 -15.10657 -14.87495 -14.55344 -14.19574 -14.05693 -13.71787 -13.63131 -13.44689 -12.86886 -12.75797 -12.61879 -12.56284 -12.18053 -12.00367 -11.85870 -11.77690 -11.60889 -11.39924 -11.27977 -10.90389 -10.73495 -10.48534 -10.40859 -9.52414 -8.11768 -6.27205 1.41057 1.42407 1.49644 1.54852 2.04308 2.42874 2.87213 3.14851 3.47771 3.66868 3.77530 3.92523 4.04045 4.10911 4.23333 4.24597 4.36377 4.44250 4.51547 4.58637 4.61001 4.71080 4.79661 4.80658 4.84861 4.91543 4.96541 5.03876 5.10563 5.10849 5.26064 5.31537 5.46512 5.54067 5.60021 5.91459 6.11824 6.14375 6.32974 6.51968 6.81915 7.15476 7.41118 8.91764 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.004427 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.604315 B = 6323.853775 C = 6558.076835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.042 3.958 10 H -0.015 1.015 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.106 3.894 14 N -0.605 5.605 15 C 0.510 3.490 16 O -0.591 6.591 17 C -0.135 4.135 18 H 0.114 0.886 19 C -0.107 4.107 20 C -0.146 4.146 21 C 0.051 3.949 22 O -0.384 6.384 23 C 0.081 3.919 24 C 0.129 3.871 25 H 0.262 0.738 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -18.373 2.595 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.022 3.978 10 H 0.004 0.996 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.016 4.016 14 N -0.336 5.336 15 C 0.300 3.700 16 O -0.472 6.472 17 C -0.156 4.156 18 H 0.132 0.868 19 C -0.145 4.145 20 C -0.184 4.184 21 C -0.025 4.025 22 O -0.303 6.303 23 C 0.003 3.997 24 C 0.007 3.993 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.073 0.927 38 H 0.130 0.870 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.263 -18.268 2.333 18.554 hybrid contribution 0.594 1.734 -0.655 1.946 sum -1.670 -16.534 1.678 16.702 Atomic orbital electron populations 1.70001 1.07089 1.27305 1.50777 1.25676 0.95682 1.02239 0.94493 0.85665 0.78450 0.79043 0.78821 1.20189 1.20740 1.19249 1.21412 0.93085 0.91926 1.51468 0.92963 1.18872 0.93136 0.91607 0.94145 0.99648 1.21423 0.98771 0.97047 0.97148 1.21846 0.97870 0.94958 1.01967 1.21988 0.90857 0.99755 0.88963 1.48408 1.42170 1.14876 1.28112 1.21074 0.83619 0.85151 0.80200 1.90627 1.37303 1.81522 1.37791 1.22016 1.00693 0.92781 1.00132 0.86774 1.21457 1.01359 0.97458 0.94245 1.22180 1.00031 0.95085 1.01096 1.22855 1.01106 0.95237 0.83305 1.87947 1.72017 1.36853 1.33466 1.22423 0.93653 0.84484 0.99135 1.21573 0.94546 0.82772 1.00417 0.92905 0.94288 0.91934 0.89065 0.93743 0.87117 0.89578 0.91951 0.92298 0.88666 0.90320 0.86296 0.92691 0.86986 0.92999 0.91931 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.27 11.32 21.44 0.24 -52.03 16 2 C 0.02 1.02 5.30 84.65 0.45 1.47 16 3 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -30.08 8.56 25.60 0.22 -29.86 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.04 2.11 2.25 -11.46 -0.03 2.08 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.11 -4.73 4.96 30.62 0.15 -4.58 16 12 C -0.13 -4.30 6.06 30.53 0.19 -4.11 16 13 C 0.11 2.95 5.81 86.22 0.50 3.45 16 14 N -0.60 -21.80 2.98 -819.71 -2.44 -24.25 16 15 C 0.51 18.06 6.81 87.66 0.60 18.66 16 16 O -0.59 -25.84 15.47 -3.02 -0.05 -25.88 16 17 C -0.13 -3.41 1.85 -11.45 -0.02 -3.44 16 18 H 0.11 2.60 6.53 -2.38 -0.02 2.58 16 19 C -0.11 -2.56 4.90 30.71 0.15 -2.41 16 20 C -0.15 -2.38 6.13 30.68 0.19 -2.20 16 21 C 0.05 0.79 6.84 72.01 0.49 1.29 16 22 O -0.38 -7.80 10.77 -148.98 -1.60 -9.41 16 23 C 0.08 1.73 5.93 72.01 0.43 2.16 16 24 C 0.13 5.73 5.64 86.36 0.49 6.21 16 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 3.22 6.05 -2.39 -0.01 3.21 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.11 2.33 5.05 -2.39 -0.01 2.32 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.66 7.77 -2.39 -0.02 1.64 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 2.11 7.28 -2.38 -0.02 2.09 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.05 2.53 7.04 -2.39 -0.02 2.51 16 Total: -1.00 -67.46 315.94 2.98 -64.48 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.00 Total: 12.68 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 3.80 Total: -11.27 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -2.20 Total: -76.28 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.65 Total: -35.29 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -67.46 2.98 -64.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260044580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.376 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds