Wall clock time and date at job start Mon Mar 30 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47204 * 2 1 4 4 C 1.50694 * 109.47360 * 120.00230 * 2 1 3 5 5 O 1.21288 * 119.99939 * 107.22787 * 4 2 1 6 6 N 1.34776 * 120.00400 * 287.23109 * 4 2 1 7 7 C 1.46933 * 120.62541 * 356.31330 * 6 4 2 8 8 C 1.53194 * 108.77451 * 126.39316 * 7 6 4 9 9 C 1.53037 * 109.31422 * 54.63325 * 8 7 6 10 10 C 1.53042 * 109.53783 * 298.63491 * 9 8 7 11 11 H 1.09006 * 109.49951 * 301.38360 * 10 9 8 12 12 C 1.50698 * 109.50044 * 181.31823 * 10 9 8 13 13 H 1.08005 * 120.00272 * 240.00224 * 12 10 9 14 14 C 1.37880 * 120.00251 * 59.72375 * 12 10 9 15 15 N 1.31514 * 119.99582 * 0.27444 * 14 12 10 16 16 Si 1.86796 * 120.00399 * 180.27911 * 14 12 10 17 17 H 1.48506 * 109.46838 * 59.99805 * 16 14 12 18 18 H 1.48501 * 109.47187 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46976 * 299.99838 * 16 14 12 20 20 C 1.46924 * 120.63266 * 176.31138 * 6 4 2 21 21 C 1.53003 * 109.46700 * 240.00203 * 2 1 3 22 22 C 1.53008 * 117.49490 * 128.74750 * 21 2 1 23 23 C 1.53006 * 117.49850 * 60.08981 * 21 2 1 24 24 H 1.09009 * 109.46906 * 299.99509 * 1 2 3 25 25 H 1.09004 * 109.47708 * 59.99551 * 1 2 3 26 26 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 27 27 H 0.96702 * 114.00107 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.58808 * 6.60374 * 7 6 4 29 29 H 1.09005 * 109.58125 * 246.17564 * 7 6 4 30 30 H 1.08998 * 109.49757 * 294.68098 * 8 7 6 31 31 H 1.08996 * 109.49843 * 174.58663 * 8 7 6 32 32 H 1.08996 * 109.46344 * 178.61963 * 9 8 7 33 33 H 1.09003 * 109.46108 * 58.65063 * 9 8 7 34 34 H 0.96999 * 120.00398 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.58462 * 113.82360 * 20 6 4 36 36 H 1.08992 * 109.58849 * 353.39831 * 20 6 4 37 37 H 1.09000 * 115.55290 * 274.41467 * 21 2 1 38 38 H 1.09000 * 117.49761 * 359.97438 * 22 21 2 39 39 H 1.09002 * 117.49822 * 145.02069 * 22 21 2 40 40 H 1.09001 * 117.49290 * 214.97692 * 23 21 2 41 41 H 1.08998 * 117.49936 * 359.96996 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5278 -1.8133 1.1340 6 7 1.9310 -0.1204 2.4379 7 6 1.4075 1.2470 2.5613 8 6 0.2569 1.2449 3.5726 9 6 0.7422 0.6364 4.8903 10 6 1.1808 -0.8108 4.6548 11 1 0.3447 -1.3837 4.2538 12 6 1.6281 -1.4194 5.9589 13 1 2.6380 -1.7874 6.0649 14 6 0.7498 -1.5013 7.0186 15 7 -0.4799 -1.0532 6.8896 16 14 1.3065 -2.2486 8.6375 17 1 2.4479 -1.4666 9.1771 18 1 0.1835 -2.2186 9.6087 19 1 1.7309 -3.6539 8.4140 20 6 2.3420 -0.8322 3.6557 21 6 2.0398 -0.7212 -1.2493 22 6 3.0762 0.0041 -2.1102 23 6 1.6372 -0.1482 -2.6097 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.9703 1.4236 -0.0004 28 1 1.0419 1.5871 1.5924 29 1 2.1987 1.9111 2.9093 30 1 -0.5704 0.6528 3.1813 31 1 -0.0772 2.2679 3.7456 32 1 -0.0676 0.6562 5.6195 33 1 1.5855 1.2144 5.2684 34 1 -1.0979 -1.1110 7.6349 35 1 3.2093 -0.3375 4.0930 36 1 2.5928 -1.8637 3.4090 37 1 2.1252 -1.8046 -1.1649 38 1 3.3943 0.9951 -1.7867 39 1 3.8430 -0.6022 -2.5924 40 1 1.4580 -0.8546 -3.4202 41 1 1.0087 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:15 Heat of formation + Delta-G solvation = -62.731979 kcal Electronic energy + Delta-G solvation = -21730.399734 eV Core-core repulsion = 18610.975792 eV Total energy + Delta-G solvation = -3119.423942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50551 -38.08489 -36.66097 -35.28847 -33.35830 -31.36944 -31.13453 -29.90358 -25.49417 -25.06997 -23.96660 -22.41561 -21.69565 -21.02114 -19.65299 -18.64535 -17.54824 -16.78130 -16.25927 -15.47869 -15.06778 -14.79418 -14.44271 -13.84976 -13.53217 -13.50987 -13.02081 -12.78693 -12.69790 -12.43210 -12.17061 -12.02161 -11.85496 -11.67678 -11.51310 -10.96833 -10.91392 -10.77611 -10.63754 -10.42547 -10.23466 -10.14839 -9.90022 -9.75907 -9.44656 -9.03042 -8.74936 -8.37861 -7.88543 -6.01868 -4.09322 2.89231 3.31153 3.35459 3.36561 3.42458 3.72542 4.05405 4.42038 4.55386 4.61841 4.80783 4.99623 5.26643 5.27538 5.35760 5.51101 5.59527 5.70780 5.72126 5.74915 5.83964 5.97215 6.00889 6.09756 6.19051 6.23541 6.36932 6.42015 6.53413 6.67180 6.84729 6.97287 7.18070 7.30990 7.39431 7.68830 7.91610 8.02084 8.08048 8.36945 8.59077 8.93936 9.55475 11.03404 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038075 B = 0.004859 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.213164 B = 5760.534123 C = 6063.553853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.152 3.848 3 O -0.544 6.544 4 C 0.486 3.514 5 O -0.548 6.548 6 N -0.589 5.589 7 C 0.093 3.907 8 C -0.137 4.137 9 C -0.113 4.113 10 C 0.042 3.958 11 H 0.028 0.972 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.114 3.886 21 C -0.169 4.169 22 C -0.177 4.177 23 C -0.168 4.168 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.378 0.622 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 6.318 -14.949 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.108 3.892 3 O -0.352 6.352 4 C 0.272 3.728 5 O -0.426 6.426 6 N -0.320 5.320 7 C -0.029 4.029 8 C -0.175 4.175 9 C -0.151 4.151 10 C 0.023 3.977 11 H 0.046 0.954 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.007 4.007 21 C -0.188 4.188 22 C -0.214 4.214 23 C -0.205 4.205 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.228 0.772 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.936 5.892 -14.868 16.110 hybrid contribution 0.844 -0.499 1.069 1.451 sum 2.779 5.393 -13.799 15.074 Atomic orbital electron populations 1.21860 0.90483 1.03509 1.03785 1.20790 0.96161 0.81427 0.90809 1.86537 1.27197 1.25083 1.96342 1.21081 0.79746 0.86682 0.85295 1.90654 1.45247 1.20673 1.86060 1.48311 1.61243 1.15943 1.06548 1.22222 0.96768 0.82206 1.01723 1.22037 0.97224 1.00193 0.98039 1.21630 1.01561 0.96892 0.94995 1.18953 0.92619 0.93433 0.92740 0.95368 1.21044 0.98163 1.39602 0.96592 0.92581 1.24929 0.94835 0.95256 0.98720 1.69862 1.04700 1.46390 1.31793 0.86639 0.78129 0.79871 0.83260 1.20264 1.21292 1.20229 1.22034 0.98930 0.96467 0.83274 1.22813 1.04344 1.00904 0.90722 1.22963 0.92694 1.01951 1.03814 1.22923 0.97935 1.03122 0.96479 0.90596 0.90878 0.90524 0.77246 0.87650 0.92410 0.92570 0.92572 0.88705 0.94689 0.92920 0.92742 0.90498 0.85901 0.88449 0.88789 0.88867 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.39 37.15 0.31 -1.46 16 2 C 0.15 2.05 0.77 -91.78 -0.07 1.98 16 3 O -0.54 -6.33 9.20 -35.23 -0.32 -6.65 16 4 C 0.49 8.72 6.67 -10.99 -0.07 8.65 16 5 O -0.55 -11.65 15.07 5.55 0.08 -11.56 16 6 N -0.59 -10.96 2.97 -172.76 -0.51 -11.48 16 7 C 0.09 1.50 5.07 -3.71 -0.02 1.48 16 8 C -0.14 -2.48 6.00 -26.61 -0.16 -2.64 16 9 C -0.11 -2.56 4.96 -26.69 -0.13 -2.69 16 10 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.52 -14.03 8.57 -34.44 -0.30 -14.33 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -24.99 11.30 55.43 0.63 -24.36 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.11 2.50 5.65 -3.71 -0.02 2.48 16 21 C -0.17 -2.09 4.87 -90.61 -0.44 -2.53 16 22 C -0.18 -1.77 9.74 -26.69 -0.26 -2.03 16 23 C -0.17 -1.63 9.68 -26.69 -0.26 -1.89 16 24 H 0.08 1.02 5.94 -51.92 -0.31 0.71 16 25 H 0.07 0.78 7.29 -51.93 -0.38 0.40 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.38 3.61 7.55 45.56 0.34 3.95 16 28 H 0.11 1.50 3.63 -51.93 -0.19 1.31 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.06 7.80 -51.93 -0.41 0.65 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 2.43 6.03 -51.93 -0.31 2.12 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.81 7.03 -51.93 -0.36 1.44 16 37 H 0.12 1.75 7.34 -51.93 -0.38 1.37 16 38 H 0.10 0.86 6.37 -51.93 -0.33 0.53 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.92 7.61 -51.93 -0.40 0.53 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -29.84 315.10 -7.76 -37.60 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.65 Total: 6.07 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.72 Total: -10.50 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.11 Total: -35.84 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.24 Total: -18.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.84 -7.76 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.128 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds