Wall clock time and date at job start Mon Mar 30 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47204 * 2 1 4 4 C 1.50694 * 109.47360 * 120.00230 * 2 1 3 5 5 O 1.21288 * 119.99939 * 107.22787 * 4 2 1 6 6 N 1.34776 * 120.00400 * 287.23109 * 4 2 1 7 7 C 1.46933 * 120.62541 * 356.31330 * 6 4 2 8 8 C 1.53194 * 108.77451 * 126.39316 * 7 6 4 9 9 C 1.53037 * 109.31422 * 54.63325 * 8 7 6 10 10 C 1.53042 * 109.53783 * 298.63491 * 9 8 7 11 11 H 1.09006 * 109.49951 * 301.38360 * 10 9 8 12 12 C 1.50698 * 109.50044 * 181.31823 * 10 9 8 13 13 H 1.08005 * 120.00272 * 240.00224 * 12 10 9 14 14 C 1.37880 * 120.00251 * 59.72375 * 12 10 9 15 15 N 1.31514 * 119.99582 * 0.27444 * 14 12 10 16 16 Si 1.86796 * 120.00399 * 180.27911 * 14 12 10 17 17 H 1.48506 * 109.46838 * 59.99805 * 16 14 12 18 18 H 1.48501 * 109.47187 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46976 * 299.99838 * 16 14 12 20 20 C 1.46924 * 120.63266 * 176.31138 * 6 4 2 21 21 C 1.53003 * 109.46700 * 240.00203 * 2 1 3 22 22 C 1.53008 * 117.49490 * 128.74750 * 21 2 1 23 23 C 1.53006 * 117.49850 * 60.08981 * 21 2 1 24 24 H 1.09009 * 109.46906 * 299.99509 * 1 2 3 25 25 H 1.09004 * 109.47708 * 59.99551 * 1 2 3 26 26 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 27 27 H 0.96702 * 114.00107 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.58808 * 6.60374 * 7 6 4 29 29 H 1.09005 * 109.58125 * 246.17564 * 7 6 4 30 30 H 1.08998 * 109.49757 * 294.68098 * 8 7 6 31 31 H 1.08996 * 109.49843 * 174.58663 * 8 7 6 32 32 H 1.08996 * 109.46344 * 178.61963 * 9 8 7 33 33 H 1.09003 * 109.46108 * 58.65063 * 9 8 7 34 34 H 0.96999 * 120.00398 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.58462 * 113.82360 * 20 6 4 36 36 H 1.08992 * 109.58849 * 353.39831 * 20 6 4 37 37 H 1.09000 * 115.55290 * 274.41467 * 21 2 1 38 38 H 1.09000 * 117.49761 * 359.97438 * 22 21 2 39 39 H 1.09002 * 117.49822 * 145.02069 * 22 21 2 40 40 H 1.09001 * 117.49290 * 214.97692 * 23 21 2 41 41 H 1.08998 * 117.49936 * 359.96996 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5278 -1.8133 1.1340 6 7 1.9310 -0.1204 2.4379 7 6 1.4075 1.2470 2.5613 8 6 0.2569 1.2449 3.5726 9 6 0.7422 0.6364 4.8903 10 6 1.1808 -0.8108 4.6548 11 1 0.3447 -1.3837 4.2538 12 6 1.6281 -1.4194 5.9589 13 1 2.6380 -1.7874 6.0649 14 6 0.7498 -1.5013 7.0186 15 7 -0.4799 -1.0532 6.8896 16 14 1.3065 -2.2486 8.6375 17 1 2.4479 -1.4666 9.1771 18 1 0.1835 -2.2186 9.6087 19 1 1.7309 -3.6539 8.4140 20 6 2.3420 -0.8322 3.6557 21 6 2.0398 -0.7212 -1.2493 22 6 3.0762 0.0041 -2.1102 23 6 1.6372 -0.1482 -2.6097 24 1 -0.3633 0.5138 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.9703 1.4236 -0.0004 28 1 1.0419 1.5871 1.5924 29 1 2.1987 1.9111 2.9093 30 1 -0.5704 0.6528 3.1813 31 1 -0.0772 2.2679 3.7456 32 1 -0.0676 0.6562 5.6195 33 1 1.5855 1.2144 5.2684 34 1 -1.0979 -1.1110 7.6349 35 1 3.2093 -0.3375 4.0930 36 1 2.5928 -1.8637 3.4090 37 1 2.1252 -1.8046 -1.1649 38 1 3.3943 0.9951 -1.7867 39 1 3.8430 -0.6022 -2.5924 40 1 1.4580 -0.8546 -3.4202 41 1 1.0087 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597900708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:15 Heat of formation + Delta-G solvation = -81.949479 kcal Electronic energy + Delta-G solvation = -21731.233067 eV Core-core repulsion = 18610.975792 eV Total energy + Delta-G solvation = -3120.257276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79553 -39.34277 -38.22593 -36.28644 -35.18123 -33.03220 -32.43290 -31.50493 -27.15193 -26.74685 -25.22599 -23.39620 -23.17106 -22.39487 -20.92734 -20.11482 -18.91948 -18.27946 -17.75504 -16.97302 -16.66041 -16.34564 -15.69094 -15.20660 -15.13900 -14.73734 -14.53047 -14.36438 -14.17551 -13.61076 -13.56884 -13.35079 -13.18971 -12.95442 -12.85023 -12.61851 -12.55548 -12.27059 -11.97645 -11.86810 -11.72546 -11.50969 -11.29623 -11.25502 -11.01757 -10.85552 -10.47788 -10.21900 -9.51159 -8.11570 -6.27422 1.40577 1.42032 1.47736 1.50343 2.02855 2.42524 2.84851 3.05854 3.14560 3.40027 3.61266 3.94030 4.08900 4.19810 4.27782 4.32321 4.40664 4.41313 4.54909 4.62374 4.73792 4.75642 4.82528 4.84416 4.90158 5.01720 5.03611 5.09247 5.16802 5.26053 5.31019 5.33368 5.45791 5.56332 5.59753 5.91064 6.11547 6.32572 6.39848 6.60753 6.81455 7.14274 7.40732 8.91747 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038075 B = 0.004859 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.213164 B = 5760.534123 C = 6063.553853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.170 3.830 3 O -0.535 6.535 4 C 0.479 3.521 5 O -0.588 6.588 6 N -0.593 5.593 7 C 0.099 3.901 8 C -0.130 4.130 9 C -0.105 4.105 10 C 0.043 3.957 11 H -0.014 1.014 12 C -0.541 4.541 13 H 0.051 0.949 14 C 0.018 3.982 15 N -0.912 5.912 16 Si 0.955 3.045 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.276 1.276 20 C 0.126 3.874 21 C -0.196 4.196 22 C -0.169 4.169 23 C -0.148 4.148 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.391 0.609 28 H 0.134 0.866 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 8.286 -16.383 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.126 3.874 3 O -0.344 6.344 4 C 0.267 3.733 5 O -0.469 6.469 6 N -0.324 5.324 7 C -0.022 4.022 8 C -0.168 4.168 9 C -0.144 4.144 10 C 0.024 3.976 11 H 0.004 0.996 12 C -0.580 4.580 13 H 0.070 0.930 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.201 1.201 20 C 0.004 3.996 21 C -0.215 4.215 22 C -0.206 4.206 23 C -0.184 4.184 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.242 0.758 28 H 0.151 0.849 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.345 7.889 -16.319 18.277 hybrid contribution 0.724 -1.149 1.500 2.023 sum 3.069 6.741 -14.819 16.567 Atomic orbital electron populations 1.21894 0.89801 1.03243 1.04797 1.20541 0.96412 0.81799 0.88664 1.86497 1.28511 1.23385 1.96030 1.22100 0.78595 0.86377 0.86256 1.90629 1.46843 1.22664 1.86748 1.48380 1.61448 1.16799 1.05787 1.22395 0.96360 0.80898 1.02533 1.21961 0.97661 1.01223 0.95932 1.21428 1.00364 0.95704 0.96859 1.18852 0.92101 0.94188 0.92457 0.99596 1.21410 0.98212 1.40285 0.98050 0.93027 1.25685 0.94893 0.95585 1.01931 1.69999 1.05516 1.46960 1.32652 0.85655 0.78003 0.78972 0.79288 1.19304 1.20668 1.20132 1.21591 0.97909 0.95782 0.84327 1.22635 1.07690 0.99564 0.91575 1.23110 0.92914 1.02258 1.02298 1.23020 0.97782 1.03152 0.94484 0.91315 0.88018 0.91582 0.75786 0.84867 0.90726 0.93648 0.89541 0.91889 0.94622 0.92880 0.92178 0.93061 0.88665 0.86837 0.88358 0.87767 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.39 71.98 0.60 -2.70 16 2 C 0.17 4.28 0.77 -11.54 -0.01 4.27 16 3 O -0.54 -10.50 9.20 -148.98 -1.37 -11.87 16 4 C 0.48 17.14 6.67 87.66 0.58 17.73 16 5 O -0.59 -25.82 15.07 -3.05 -0.05 -25.87 16 6 N -0.59 -21.95 2.97 -818.88 -2.43 -24.39 16 7 C 0.10 2.98 5.07 86.36 0.44 3.42 16 8 C -0.13 -4.56 6.00 30.67 0.18 -4.38 16 9 C -0.11 -4.84 4.96 30.62 0.15 -4.69 16 10 C 0.04 2.22 2.25 -11.46 -0.03 2.20 16 11 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 12 C -0.54 -30.44 8.57 25.60 0.22 -30.22 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C 0.02 1.02 5.30 84.66 0.45 1.47 16 15 N -0.91 -52.61 11.30 21.45 0.24 -52.37 16 16 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 C 0.13 5.71 5.65 86.36 0.49 6.20 16 21 C -0.20 -4.52 4.87 -10.79 -0.05 -4.58 16 22 C -0.17 -2.87 9.74 30.62 0.30 -2.58 16 23 C -0.15 -2.39 9.68 30.62 0.30 -2.10 16 24 H 0.07 1.71 5.94 -2.38 -0.01 1.70 16 25 H 0.10 1.81 7.29 -2.38 -0.02 1.79 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.39 5.93 7.55 -74.06 -0.56 5.37 16 28 H 0.13 3.33 3.63 -2.39 -0.01 3.32 16 29 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.04 1.69 7.80 -2.39 -0.02 1.67 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 3.31 6.03 -2.39 -0.01 3.29 16 33 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.05 2.54 7.03 -2.39 -0.02 2.53 16 37 H 0.10 2.76 7.34 -2.39 -0.02 2.74 16 38 H 0.11 1.55 6.37 -2.39 -0.02 1.54 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.57 7.61 -2.39 -0.02 1.55 16 Total: -1.00 -67.39 315.10 2.52 -64.87 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.47 Total: 19.61 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.63 Total: -15.94 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.19 Total: -76.75 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.42 Total: -37.74 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.39 2.52 -64.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.075 kcal (2) G-P(sol) polarization free energy of solvation -67.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds