Wall clock time and date at job start Mon Mar 30 2020 01:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 N 1.46507 * 109.47233 * 184.40130 * 3 2 1 5 5 C 1.37098 * 119.99961 * 265.39440 * 4 3 2 6 6 H 1.07997 * 119.99592 * 138.17363 * 5 4 3 7 7 C 1.38945 * 119.99909 * 318.16723 * 5 4 3 8 8 N 1.31417 * 119.99756 * 157.21821 * 7 5 4 9 9 Si 1.86802 * 120.00498 * 337.21699 * 7 5 4 10 10 H 1.48499 * 109.46971 * 92.77942 * 9 7 5 11 11 H 1.48496 * 109.47611 * 212.78289 * 9 7 5 12 12 H 1.48504 * 109.46812 * 332.78472 * 9 7 5 13 13 C 1.34777 * 119.99964 * 85.39524 * 4 3 2 14 14 O 1.21296 * 119.99582 * 4.84528 * 13 4 3 15 15 C 1.50696 * 119.99972 * 184.84882 * 13 4 3 16 16 H 1.08995 * 109.41392 * 35.42878 * 15 13 4 17 17 C 1.52964 * 109.41287 * 275.56927 * 15 13 4 18 18 C 1.53224 * 109.40333 * 176.36907 * 17 15 13 19 19 C 1.51269 * 108.53887 * 54.62908 * 18 17 15 20 20 O 1.20760 * 120.85046 * 128.67595 * 19 18 17 21 21 C 1.51268 * 118.29924 * 308.64873 * 19 18 17 22 22 H 1.08998 * 109.62928 * 291.44743 * 21 19 18 23 23 C 1.53002 * 109.62421 * 171.06291 * 21 19 18 24 24 C 1.52966 * 109.35406 * 155.25673 * 15 13 4 25 25 H 1.09000 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46839 * 299.99930 * 1 2 3 27 27 H 1.09000 * 109.46927 * 59.99841 * 1 2 3 28 28 H 1.09009 * 109.47288 * 240.00180 * 2 1 3 29 29 H 1.09000 * 109.47451 * 120.00186 * 2 1 3 30 30 H 1.08999 * 109.47343 * 64.40570 * 3 2 1 31 31 H 1.09004 * 109.47602 * 304.40060 * 3 2 1 32 32 H 0.97001 * 119.99700 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.48228 * 296.34826 * 17 15 13 34 34 H 1.08998 * 109.48057 * 56.37383 * 17 15 13 35 35 H 1.09000 * 109.62773 * 174.34575 * 18 17 15 36 36 H 1.09001 * 109.62377 * 294.71961 * 18 17 15 37 37 H 1.08992 * 109.46991 * 60.00008 * 23 21 19 38 38 H 1.09003 * 109.46637 * 180.02562 * 23 21 19 39 39 H 1.09006 * 109.47055 * 299.99916 * 23 21 19 40 40 H 1.09003 * 109.47890 * 303.64394 * 24 15 13 41 41 H 1.08998 * 109.48274 * 63.68855 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5012 1.4439 -0.1060 5 6 4.2706 1.5095 1.0268 6 1 5.1535 0.8941 1.1163 7 6 3.9144 2.3680 2.0597 8 7 4.3396 2.1376 3.2816 9 14 2.8313 3.8496 1.7115 10 1 1.4089 3.4863 1.9350 11 1 3.2069 4.9620 2.6206 12 1 3.0171 4.2781 0.3018 13 6 4.0890 1.3806 -1.3172 14 8 3.4112 1.4112 -2.3226 15 6 5.5884 1.2717 -1.4222 16 1 5.9657 0.6617 -0.6015 17 6 6.2063 2.6688 -1.3432 18 6 7.7340 2.5513 -1.3588 19 6 8.1429 1.7570 -2.5795 20 8 8.9811 2.1780 -3.3400 21 6 7.4753 0.4215 -2.8228 22 1 7.7908 -0.2899 -2.0597 23 6 7.8642 -0.1028 -4.2066 24 6 5.9570 0.6163 -2.7543 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.7425 1.9330 0.9268 31 1 1.6137 1.9786 -0.8479 32 1 4.0913 2.7371 4.0026 33 1 5.8785 3.2601 -2.1981 34 1 5.8883 3.1553 -0.4212 35 1 8.1773 3.5460 -1.4039 36 1 8.0711 2.0409 -0.4565 37 1 8.9461 -0.2242 -4.2582 38 1 7.3816 -1.0647 -4.3794 39 1 7.5415 0.6073 -4.9681 40 1 5.4624 -0.3520 -2.8321 41 1 5.6351 1.2563 -3.5757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345217543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:38 Heat of formation + Delta-G solvation = -95.647563 kcal Electronic energy + Delta-G solvation = -21579.621121 eV Core-core repulsion = 18458.769852 eV Total energy + Delta-G solvation = -3120.851269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11131 -38.85394 -36.08377 -35.05838 -33.14553 -32.59365 -31.62288 -29.32107 -26.39979 -25.59968 -24.75340 -22.27107 -21.90257 -20.86535 -18.97478 -18.81693 -16.95102 -16.24861 -15.72570 -15.38266 -15.33571 -14.56325 -14.18508 -14.16147 -14.08455 -13.53197 -13.11421 -12.95968 -12.61362 -12.47901 -12.30876 -12.12632 -11.80845 -11.67581 -11.54215 -11.42263 -11.14532 -11.00201 -10.89991 -10.71924 -10.59009 -10.48312 -10.27397 -9.98989 -9.85114 -9.21427 -9.07802 -8.56150 -7.78988 -6.55975 -4.17590 2.15180 3.00654 3.17197 3.26197 3.64269 4.07680 4.19963 4.32025 4.81777 4.91474 5.05589 5.11061 5.39807 5.43063 5.53900 5.57201 5.58688 5.69184 5.71805 5.82702 5.87179 5.93448 6.02000 6.07765 6.14217 6.20634 6.25882 6.33550 6.34979 6.37061 6.40795 6.41643 6.69030 6.71823 6.73935 6.86567 7.35012 7.68590 8.02704 8.17028 8.89697 9.28890 9.63805 10.54249 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.006854 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.388559 B = 4084.046076 C = 4961.911464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.102 3.898 4 N -0.464 5.464 5 C -0.347 4.347 6 H 0.104 0.896 7 C 0.073 3.927 8 N -0.856 5.856 9 Si 0.866 3.134 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.261 1.261 13 C 0.489 3.511 14 O -0.596 6.596 15 C -0.093 4.093 16 H 0.098 0.902 17 C -0.097 4.097 18 C -0.166 4.166 19 C 0.368 3.632 20 O -0.466 6.466 21 C -0.142 4.142 22 H 0.104 0.896 23 C -0.137 4.137 24 C -0.089 4.089 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.275 0.725 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -2.663 -5.493 6.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.021 4.021 4 N -0.184 5.184 5 C -0.474 4.474 6 H 0.121 0.879 7 C -0.135 4.135 8 N -0.491 5.491 9 Si 0.692 3.308 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.185 1.185 13 C 0.278 3.722 14 O -0.481 6.481 15 C -0.114 4.114 16 H 0.117 0.883 17 C -0.135 4.135 18 C -0.203 4.203 19 C 0.244 3.756 20 O -0.340 6.340 21 C -0.161 4.161 22 H 0.122 0.878 23 C -0.194 4.194 24 C -0.127 4.127 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.863 -2.361 -6.155 6.851 hybrid contribution -0.639 0.768 0.388 1.072 sum 1.224 -1.593 -5.767 6.107 Atomic orbital electron populations 1.21707 0.96391 1.01032 1.01383 1.21761 0.94803 0.98012 1.02295 1.21657 0.82831 0.96555 1.01072 1.43742 1.04119 1.64987 1.05579 1.18977 1.11076 1.24386 0.92993 0.87899 1.25321 0.96361 0.97195 0.94590 1.69783 1.43958 1.36108 0.99247 0.87091 0.80616 0.83443 0.79620 1.20000 1.21280 1.18456 1.20347 0.89470 0.79257 0.83122 1.90542 1.65817 1.55349 1.36379 1.21066 0.93907 0.97971 0.98442 0.88348 1.21342 0.91656 0.96472 1.04048 1.22308 0.98415 1.01453 0.98175 1.25011 0.78279 0.87455 0.84825 1.90341 1.27706 1.70136 1.45865 1.21921 0.97610 0.96641 0.99934 0.87813 1.21634 1.01459 1.00975 0.95357 1.21425 0.91489 1.01935 0.97815 0.93071 0.93018 0.93022 0.92164 0.91422 0.91329 0.91815 0.91471 0.91966 0.88835 0.89589 0.87940 0.92321 0.92069 0.92389 0.90850 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.13 -2.42 6.23 -26.73 -0.17 -2.59 16 3 C 0.10 2.17 4.07 -4.04 -0.02 2.16 16 4 N -0.46 -10.47 2.09 -114.81 -0.24 -10.71 16 5 C -0.35 -8.29 8.28 -14.93 -0.12 -8.41 16 6 H 0.10 2.53 6.75 -52.49 -0.35 2.18 16 7 C 0.07 1.81 5.23 -17.47 -0.09 1.72 16 8 N -0.86 -22.28 13.96 55.50 0.77 -21.51 16 9 Si 0.87 19.55 25.41 -169.99 -4.32 15.23 16 10 H -0.27 -6.02 6.62 56.52 0.37 -5.64 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.49 10.57 6.71 -10.99 -0.07 10.49 16 14 O -0.60 -14.11 15.78 5.54 0.09 -14.03 16 15 C -0.09 -1.64 1.73 -91.81 -0.16 -1.79 16 16 H 0.10 1.71 6.58 -51.93 -0.34 1.37 16 17 C -0.10 -1.62 5.14 -26.63 -0.14 -1.76 16 18 C -0.17 -2.34 6.17 -27.49 -0.17 -2.51 16 19 C 0.37 5.46 6.58 -28.48 -0.19 5.27 16 20 O -0.47 -8.02 16.86 6.00 0.10 -7.92 16 21 C -0.14 -1.89 3.01 -91.37 -0.27 -2.17 16 22 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 23 C -0.14 -1.68 8.60 37.16 0.32 -1.36 16 24 C -0.09 -1.37 3.96 -26.63 -0.11 -1.47 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.51 4.07 -51.93 -0.21 1.29 16 31 H 0.06 1.37 7.50 -51.93 -0.39 0.98 16 32 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.71 7.47 -51.93 -0.39 1.32 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -27.90 324.95 -6.27 -34.17 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.75 Total: 4.16 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.82 Total: -4.30 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.53 Total: -32.21 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.19 Total: -21.95 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.32 Total: 15.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.90 -6.27 -34.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345217543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.476 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds