Wall clock time and date at job start Mon Mar 30 2020 01:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46911 * 2 1 4 4 H 1.09001 * 109.47205 * 55.00049 * 3 2 1 5 5 C 1.50697 * 109.47010 * 175.00027 * 3 2 1 6 6 H 1.08004 * 120.00046 * 120.00193 * 5 3 2 7 7 C 1.37875 * 120.00005 * 299.99984 * 5 3 2 8 8 N 1.31513 * 120.00114 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00226 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47013 * 59.99694 * 9 7 5 11 11 H 1.48494 * 109.47409 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46846 * 299.99750 * 9 7 5 13 13 N 1.46500 * 109.47087 * 294.99846 * 3 2 1 14 14 C 1.34779 * 120.00095 * 85.00081 * 13 3 2 15 15 O 1.21283 * 119.99929 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00195 * 179.97438 * 14 13 3 17 17 H 1.08994 * 115.55670 * 32.24691 * 16 14 13 18 18 C 1.53067 * 117.50802 * 177.95764 * 16 14 13 19 19 C 1.52694 * 59.92984 * 107.46456 * 18 16 14 20 20 C 1.53251 * 117.88017 * 107.77811 * 19 18 16 21 21 C 1.53328 * 108.49231 * 196.24553 * 20 19 18 22 22 O 1.42871 * 109.32218 * 306.03917 * 21 20 19 23 23 C 1.42862 * 114.53143 * 64.35482 * 22 21 20 24 24 C 1.53259 * 117.88124 * 252.22140 * 19 18 16 25 25 H 1.09005 * 109.46970 * 300.00563 * 1 2 3 26 26 H 1.09006 * 109.46746 * 59.99896 * 1 2 3 27 27 H 1.08993 * 109.46668 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47177 * 240.00217 * 2 1 3 29 29 H 1.08997 * 109.47148 * 119.99687 * 2 1 3 30 30 H 0.97002 * 120.00413 * 180.02562 * 8 7 5 31 31 H 0.96993 * 120.00471 * 265.00126 * 13 3 2 32 32 H 1.08997 * 117.50486 * 214.93728 * 18 16 14 33 33 H 1.08999 * 117.50301 * 359.96064 * 18 16 14 34 34 H 1.08998 * 109.63243 * 315.94431 * 20 19 18 35 35 H 1.08999 * 109.63938 * 76.53964 * 20 19 18 36 36 H 1.08994 * 109.49467 * 186.08120 * 21 20 19 37 37 H 1.09007 * 109.49476 * 65.98697 * 21 20 19 38 38 H 1.09001 * 109.49719 * 175.69092 * 23 22 21 39 39 H 1.08999 * 109.49557 * 55.59309 * 23 22 21 40 40 H 1.08999 * 109.63150 * 283.45248 * 24 19 18 41 41 H 1.08991 * 109.62963 * 43.85554 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.4994 2.2817 1.3821 11 1 6.3978 0.2179 2.6509 12 1 6.5975 0.1474 0.2349 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0367 3.3386 -2.6545 17 1 0.4582 2.9061 -3.5618 18 6 -1.3761 3.9215 -2.7395 19 6 -0.1705 4.8514 -2.6238 20 6 0.2367 5.6545 -3.8639 21 6 1.6618 6.1808 -3.6561 22 8 1.7245 6.9017 -2.4242 23 6 1.4878 6.1084 -1.2599 24 6 0.0499 5.5768 -1.2919 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0602 2.9503 31 1 2.2719 2.1232 -1.9978 32 1 -1.8837 3.8728 -3.7029 33 1 -2.0174 3.8167 -1.8644 34 1 0.2087 5.0105 -4.7428 35 1 -0.4472 6.4925 -3.9985 36 1 1.9285 6.8434 -4.4794 37 1 2.3579 5.3426 -3.6228 38 1 1.6300 6.7192 -0.3684 39 1 2.1850 5.2707 -1.2426 40 1 -0.6499 6.4082 -1.2075 41 1 -0.1053 4.8821 -0.4665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368347812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:58 Heat of formation + Delta-G solvation = -75.512852 kcal Electronic energy + Delta-G solvation = -21588.253508 eV Core-core repulsion = 18468.275345 eV Total energy + Delta-G solvation = -3119.978163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26704 -38.45920 -36.35246 -34.82470 -32.35620 -31.19543 -30.92871 -29.98754 -27.14298 -24.32700 -23.66979 -22.90412 -22.44044 -20.20683 -19.38098 -18.75335 -17.07609 -16.14476 -16.00255 -15.82253 -15.31226 -14.83063 -14.63082 -14.36520 -13.92275 -13.36654 -13.26030 -12.88012 -12.67765 -12.32452 -12.20302 -11.69514 -11.52117 -11.32284 -11.24105 -11.01126 -10.94390 -10.81416 -10.66158 -10.34101 -10.30793 -10.15791 -9.86305 -9.63573 -9.22609 -9.06636 -8.92147 -8.50662 -7.81160 -6.13634 -4.23264 3.09893 3.24263 3.29880 3.30865 3.92067 3.96215 4.09063 4.34720 4.69237 4.82776 4.87008 4.97345 5.07031 5.17684 5.26394 5.49490 5.51561 5.56870 5.67189 5.75107 5.78363 5.87636 5.88023 6.12679 6.21600 6.23013 6.37070 6.38791 6.45436 6.65727 7.03645 7.18885 7.28412 7.36195 7.45876 7.60934 7.72907 7.89041 8.17167 8.67942 8.77096 9.15157 9.44618 10.91579 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.006191 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.554932 B = 4521.339831 C = 5473.483425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.532 3.468 15 O -0.549 6.549 16 C -0.182 4.182 17 H 0.114 0.886 18 C -0.140 4.140 19 C -0.101 4.101 20 C -0.116 4.116 21 C 0.063 3.937 22 O -0.386 6.386 23 C 0.063 3.937 24 C -0.126 4.126 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 8.040 -11.300 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.317 3.683 15 O -0.428 6.428 16 C -0.204 4.204 17 H 0.132 0.868 18 C -0.177 4.177 19 C -0.101 4.101 20 C -0.153 4.153 21 C -0.014 4.014 22 O -0.305 6.305 23 C -0.014 4.014 24 C -0.164 4.164 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.459 8.085 -10.395 14.256 hybrid contribution 1.239 -0.551 -0.372 1.406 sum -4.220 7.535 -10.767 13.802 Atomic orbital electron populations 1.21838 0.98344 0.97997 1.01240 1.21940 0.92622 0.99886 1.02227 1.18765 0.94109 0.89132 0.80984 0.93371 1.21193 0.90747 1.39116 1.06273 0.92214 1.24873 0.98534 0.94785 0.95386 1.69882 1.35210 1.37543 1.09316 0.86540 0.84949 0.78343 0.77471 1.20169 1.21103 1.20175 1.46443 1.14432 1.55756 1.18465 1.19338 0.82653 0.78732 0.87582 1.90647 1.51611 1.60209 1.40357 1.22550 1.02484 0.96326 0.98995 0.86787 1.22976 0.90032 1.01119 1.03573 1.21362 1.02744 0.89232 0.96809 1.21835 0.98116 0.99662 0.95726 1.22564 0.95348 0.96551 0.86971 1.87825 1.91890 1.36623 1.14156 1.22621 0.95330 0.95589 0.87819 1.21921 0.97806 1.00568 0.96085 0.93183 0.94236 0.95925 0.95111 0.88324 0.92499 0.78098 0.88510 0.87399 0.90790 0.90481 0.89105 0.92951 0.88804 0.92391 0.90864 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.25 5.02 -54.93 -0.28 -14.53 16 14 C 0.53 10.16 5.13 -10.98 -0.06 10.10 16 15 O -0.55 -12.23 12.12 5.55 0.07 -12.16 16 16 C -0.18 -2.64 5.88 -91.88 -0.54 -3.19 16 17 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.14 -1.82 9.52 -26.85 -0.26 -2.07 16 19 C -0.10 -1.32 2.03 -154.55 -0.31 -1.63 16 20 C -0.12 -1.22 5.92 -26.43 -0.16 -1.38 16 21 C 0.06 0.71 6.85 37.33 0.26 0.96 16 22 O -0.39 -5.45 10.69 -35.23 -0.38 -5.83 16 23 C 0.06 0.91 6.84 37.33 0.26 1.17 16 24 C -0.13 -1.83 5.58 -26.43 -0.15 -1.98 16 25 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 26 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 6.95 8.54 -40.82 -0.35 6.60 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.58 7.67 -51.93 -0.40 1.19 16 34 H 0.07 0.65 8.08 -51.93 -0.42 0.24 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.62 5.95 -51.93 -0.31 1.31 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -29.16 322.68 -8.10 -37.26 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.65 Total: 8.79 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.34 Total: -9.96 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.35 Total: -38.42 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.31 Total: -17.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.16 -8.10 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368347812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.250 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds