Wall clock time and date at job start Mon Mar 30 2020 01:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46911 * 2 1 4 4 H 1.09001 * 109.47205 * 55.00049 * 3 2 1 5 5 C 1.50697 * 109.47010 * 175.00027 * 3 2 1 6 6 H 1.08004 * 120.00046 * 120.00193 * 5 3 2 7 7 C 1.37875 * 120.00005 * 299.99984 * 5 3 2 8 8 N 1.31513 * 120.00114 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00226 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47013 * 59.99694 * 9 7 5 11 11 H 1.48494 * 109.47409 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46846 * 299.99750 * 9 7 5 13 13 N 1.46500 * 109.47087 * 294.99846 * 3 2 1 14 14 C 1.34779 * 120.00095 * 85.00081 * 13 3 2 15 15 O 1.21283 * 119.99929 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00195 * 179.97438 * 14 13 3 17 17 H 1.08994 * 115.55670 * 32.24691 * 16 14 13 18 18 C 1.53067 * 117.50802 * 177.95764 * 16 14 13 19 19 C 1.52694 * 59.92984 * 107.46456 * 18 16 14 20 20 C 1.53251 * 117.88017 * 107.77811 * 19 18 16 21 21 C 1.53328 * 108.49231 * 196.24553 * 20 19 18 22 22 O 1.42871 * 109.32218 * 306.03917 * 21 20 19 23 23 C 1.42862 * 114.53143 * 64.35482 * 22 21 20 24 24 C 1.53259 * 117.88124 * 252.22140 * 19 18 16 25 25 H 1.09005 * 109.46970 * 300.00563 * 1 2 3 26 26 H 1.09006 * 109.46746 * 59.99896 * 1 2 3 27 27 H 1.08993 * 109.46668 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47177 * 240.00217 * 2 1 3 29 29 H 1.08997 * 109.47148 * 119.99687 * 2 1 3 30 30 H 0.97002 * 120.00413 * 180.02562 * 8 7 5 31 31 H 0.96993 * 120.00471 * 265.00126 * 13 3 2 32 32 H 1.08997 * 117.50486 * 214.93728 * 18 16 14 33 33 H 1.08999 * 117.50301 * 359.96064 * 18 16 14 34 34 H 1.08998 * 109.63243 * 315.94431 * 20 19 18 35 35 H 1.08999 * 109.63938 * 76.53964 * 20 19 18 36 36 H 1.08994 * 109.49467 * 186.08120 * 21 20 19 37 37 H 1.09007 * 109.49476 * 65.98697 * 21 20 19 38 38 H 1.09001 * 109.49719 * 175.69092 * 23 22 21 39 39 H 1.08999 * 109.49557 * 55.59309 * 23 22 21 40 40 H 1.08999 * 109.63150 * 283.45248 * 24 19 18 41 41 H 1.08991 * 109.62963 * 43.85554 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.4994 2.2817 1.3821 11 1 6.3978 0.2179 2.6509 12 1 6.5975 0.1474 0.2349 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0367 3.3386 -2.6545 17 1 0.4582 2.9061 -3.5618 18 6 -1.3761 3.9215 -2.7395 19 6 -0.1705 4.8514 -2.6238 20 6 0.2367 5.6545 -3.8639 21 6 1.6618 6.1808 -3.6561 22 8 1.7245 6.9017 -2.4242 23 6 1.4878 6.1084 -1.2599 24 6 0.0499 5.5768 -1.2919 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0602 2.9503 31 1 2.2719 2.1232 -1.9978 32 1 -1.8837 3.8728 -3.7029 33 1 -2.0174 3.8167 -1.8644 34 1 0.2087 5.0105 -4.7428 35 1 -0.4472 6.4925 -3.9985 36 1 1.9285 6.8434 -4.4794 37 1 2.3579 5.3426 -3.6228 38 1 1.6300 6.7192 -0.3684 39 1 2.1850 5.2707 -1.2426 40 1 -0.6499 6.4082 -1.2075 41 1 -0.1053 4.8821 -0.4665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368347812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:57 Heat of formation + Delta-G solvation = -94.145969 kcal Electronic energy + Delta-G solvation = -21589.061500 eV Core-core repulsion = 18468.275345 eV Total energy + Delta-G solvation = -3120.786155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52593 -39.82991 -37.65734 -36.54193 -34.27357 -32.79010 -32.18112 -31.08285 -29.06699 -25.84982 -24.72841 -24.51902 -23.63098 -21.81274 -21.07547 -20.02312 -18.68803 -17.58484 -17.25271 -17.12014 -16.98017 -16.26762 -15.93439 -15.82684 -15.38878 -14.72771 -14.54963 -14.41315 -14.03011 -13.82959 -13.47024 -13.35149 -13.17389 -12.94141 -12.87998 -12.66748 -12.27789 -12.20176 -12.13824 -11.96368 -11.68427 -11.59850 -11.33697 -11.07988 -10.96692 -10.61315 -10.48900 -10.20226 -9.58720 -8.17141 -6.34476 1.43112 1.44560 1.52322 1.71108 2.34340 2.62530 2.86459 2.93469 3.12349 3.61257 3.74765 3.82931 3.88968 4.07188 4.19593 4.26747 4.47406 4.50980 4.53093 4.56124 4.68311 4.74720 4.75802 4.80108 4.86651 4.93600 5.04349 5.10680 5.12224 5.21955 5.25629 5.30620 5.42928 5.55378 5.64046 5.79209 5.93350 6.16703 6.25810 6.73893 7.03463 7.33203 7.62826 8.87924 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019637 B = 0.006191 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.554932 B = 4521.339831 C = 5473.483425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.282 3.718 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.528 3.472 15 O -0.586 6.586 16 C -0.191 4.191 17 H 0.145 0.855 18 C -0.129 4.129 19 C -0.094 4.094 20 C -0.106 4.106 21 C 0.052 3.948 22 O -0.397 6.397 23 C 0.069 3.931 24 C -0.127 4.127 25 H 0.024 0.976 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.400 0.600 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.084 0.916 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.653 8.757 -14.337 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.178 3.822 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.351 5.351 14 C 0.316 3.684 15 O -0.468 6.468 16 C -0.211 4.211 17 H 0.163 0.837 18 C -0.166 4.166 19 C -0.095 4.095 20 C -0.144 4.144 21 C -0.024 4.024 22 O -0.316 6.316 23 C -0.008 4.008 24 C -0.164 4.164 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.116 8.814 -13.475 16.895 hybrid contribution 1.085 -0.727 0.601 1.438 sum -4.031 8.087 -12.874 15.729 Atomic orbital electron populations 1.21665 0.96958 0.99061 1.00234 1.21792 0.93767 0.99312 1.01186 1.18305 0.93441 0.89035 0.81403 0.98565 1.21542 0.91542 1.38926 1.06636 0.91280 1.25736 1.03137 0.94386 0.95037 1.70038 1.37086 1.38348 1.09827 0.85486 0.79354 0.78437 0.77615 1.19746 1.21127 1.18908 1.46212 1.15476 1.56015 1.17400 1.20131 0.81533 0.77822 0.88916 1.90633 1.52553 1.61305 1.42335 1.22517 1.04295 0.97251 0.97083 0.83724 1.23070 0.89162 0.99855 1.04498 1.21481 1.02490 0.88344 0.97172 1.21862 0.97485 1.00027 0.94982 1.22868 0.96058 0.97111 0.86383 1.87814 1.91953 1.37037 1.14792 1.22468 0.94736 0.94945 0.88684 1.21851 0.98115 1.00331 0.96138 0.95663 0.93691 0.93678 0.94166 0.91104 0.92602 0.76556 0.84771 0.89728 0.87903 0.89201 0.86335 0.93314 0.88673 0.94621 0.89712 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.52 71.98 0.61 -4.92 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.86 16 3 C 0.28 14.41 2.24 44.25 0.10 14.51 16 4 H 0.00 -0.22 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -28.99 8.73 25.60 0.22 -28.77 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.23 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.70 -28.79 5.02 -446.09 -2.24 -31.03 16 14 C 0.53 20.36 5.13 87.66 0.45 20.81 16 15 O -0.59 -27.26 12.12 -3.04 -0.04 -27.29 16 16 C -0.19 -5.14 5.88 -11.61 -0.07 -5.21 16 17 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 18 C -0.13 -3.02 9.52 30.52 0.29 -2.73 16 19 C -0.09 -2.25 2.03 -52.21 -0.11 -2.35 16 20 C -0.11 -1.79 5.92 30.79 0.18 -1.61 16 21 C 0.05 1.01 6.85 72.09 0.49 1.50 16 22 O -0.40 -10.54 10.69 -148.98 -1.59 -12.13 16 23 C 0.07 2.00 6.84 72.09 0.49 2.49 16 24 C -0.13 -3.67 5.58 30.79 0.17 -3.50 16 25 H 0.02 1.23 7.85 -2.38 -0.02 1.21 16 26 H 0.04 1.96 5.65 -2.38 -0.01 1.95 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.40 14.12 8.54 -92.71 -0.79 13.33 16 32 H 0.13 2.17 8.14 -2.39 -0.02 2.16 16 33 H 0.08 2.43 7.67 -2.39 -0.02 2.41 16 34 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.09 5.95 -2.39 -0.01 2.08 16 Total: -1.00 -66.02 322.68 2.08 -63.94 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.23 Total: 28.86 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 3.46 Total: -14.27 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -2.00 Total: -83.27 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.63 Total: -39.42 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -66.02 2.08 -63.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368347812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.210 kcal (2) G-P(sol) polarization free energy of solvation -66.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds