Wall clock time and date at job start Mon Mar 30 2020 01:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 120.00254 * 2 1 4 4 H 1.09005 * 115.56153 * 327.11670 * 3 2 1 5 5 C 1.53001 * 117.50059 * 181.42912 * 3 2 1 6 6 C 1.53004 * 117.50268 * 112.80410 * 3 2 1 7 7 N 1.46893 * 117.49481 * 359.97438 * 6 3 2 8 8 C 1.46906 * 111.00303 * 67.35637 * 7 6 3 9 9 H 1.09000 * 109.46555 * 318.54946 * 8 7 6 10 10 C 1.50705 * 109.46990 * 78.54390 * 8 7 6 11 11 H 1.07997 * 119.99941 * 0.02562 * 10 8 7 12 12 C 1.37882 * 119.99489 * 180.02562 * 10 8 7 13 13 N 1.31509 * 120.00220 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99407 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47271 * 60.00244 * 14 12 10 16 16 H 1.48502 * 109.46746 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46951 * 299.99898 * 14 12 10 18 18 C 1.52996 * 109.47649 * 198.54777 * 8 7 6 19 19 C 1.53002 * 109.46913 * 59.05415 * 18 8 7 20 20 C 1.50695 * 117.49844 * 215.00111 * 6 3 2 21 21 O 1.20825 * 120.00118 * 359.79443 * 20 6 3 22 22 O 1.34232 * 119.99996 * 179.78771 * 20 6 3 23 23 C 1.45198 * 117.00160 * 180.02562 * 22 20 6 24 24 C 1.52995 * 109.47165 * 180.02562 * 23 22 20 25 25 H 1.07999 * 120.00150 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99745 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99745 * 179.97438 * 2 1 3 28 28 H 1.08994 * 117.49845 * 145.01746 * 5 3 2 29 29 H 1.08994 * 117.49795 * 359.97438 * 5 3 2 30 30 H 1.00906 * 111.00295 * 191.30273 * 7 6 3 31 31 H 0.96997 * 119.99749 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.46956 * 299.05701 * 18 8 7 33 33 H 1.08994 * 109.47409 * 179.05424 * 18 8 7 34 34 H 1.09006 * 109.47057 * 300.32312 * 19 18 8 35 35 H 1.09001 * 109.47105 * 180.32536 * 19 18 8 36 36 H 1.09000 * 109.47302 * 60.32225 * 19 18 8 37 37 H 1.09002 * 109.46970 * 300.00033 * 23 22 20 38 38 H 1.08996 * 109.47553 * 59.99710 * 23 22 20 39 39 H 1.09002 * 109.47161 * 299.99864 * 24 23 22 40 40 H 1.09002 * 109.47555 * 59.99526 * 24 23 22 41 41 H 1.08997 * 109.47432 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.5836 2.1253 -0.5339 5 6 3.5917 1.2384 -0.0338 6 6 2.8724 1.6539 1.2510 7 7 2.8544 0.6913 2.3605 8 6 3.5403 -0.5535 1.9886 9 1 3.2708 -0.8259 0.9682 10 6 5.0311 -0.3515 2.0776 11 1 5.4292 0.6056 2.3804 12 6 5.8867 -1.3888 1.7722 13 7 5.4018 -2.5541 1.4030 14 14 7.7345 -1.1385 1.8832 15 1 8.1014 -0.7684 3.2737 16 1 8.4278 -2.3968 1.5072 17 1 8.1433 -0.0518 0.9573 18 6 3.1194 -1.6726 2.9433 19 6 1.6029 -1.8617 2.8703 20 6 2.9440 3.1050 1.6510 21 8 2.3781 3.9427 0.9893 22 8 3.6364 3.4669 2.7425 23 6 3.6617 4.8817 3.0681 24 6 4.4934 5.0990 4.3337 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 4.1171 2.0148 -0.5900 29 1 4.0520 0.2507 -0.0557 30 1 3.2590 1.0919 3.1935 31 1 6.0038 -3.2839 1.1886 32 1 3.4039 -1.4076 3.9616 33 1 3.6154 -2.6000 2.6571 34 1 1.1069 -0.9325 3.1510 35 1 1.3023 -2.6550 3.5546 36 1 1.3189 -2.1322 1.8533 37 1 4.1062 5.4367 2.2419 38 1 2.6442 5.2341 3.2366 39 1 4.0493 4.5440 5.1600 40 1 5.5110 4.7468 4.1648 41 1 4.5121 6.1610 4.5783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:14 Heat of formation + Delta-G solvation = -40.562231 kcal Electronic energy + Delta-G solvation = -21677.654017 eV Core-core repulsion = 18559.191427 eV Total energy + Delta-G solvation = -3118.462590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43795 -38.29961 -36.30309 -34.50637 -32.41611 -31.71296 -31.52588 -29.55863 -26.68484 -24.72176 -22.90279 -22.32523 -22.16930 -20.40833 -19.08625 -18.68883 -17.34882 -16.83662 -16.32601 -16.07983 -14.99414 -14.60756 -14.09883 -13.77890 -13.64853 -13.13873 -12.96400 -12.80574 -12.67601 -12.23697 -11.83966 -11.65705 -11.58355 -11.33165 -11.24410 -11.13891 -10.92547 -10.66290 -10.58545 -10.43051 -10.39006 -10.04561 -9.92507 -9.64813 -9.37393 -8.95028 -8.64932 -8.36412 -7.29833 -6.04932 -4.16724 2.35595 2.67112 3.06074 3.25855 3.31431 3.34504 4.35725 4.50943 4.83310 4.96592 5.00092 5.09724 5.22258 5.28093 5.32313 5.44116 5.60814 5.73443 5.80568 5.84410 6.01617 6.16205 6.24634 6.35847 6.49175 6.53595 6.64910 6.69943 6.88900 7.06717 7.16146 7.18510 7.30943 7.34458 7.53594 7.73734 7.92144 8.03849 8.08009 8.22106 8.51762 8.92654 9.50300 10.94965 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.008719 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.095246 B = 3210.757510 C = 4458.098919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.098 4.098 4 H 0.112 0.888 5 C -0.162 4.162 6 C 0.066 3.934 7 N -0.637 5.637 8 C 0.203 3.797 9 H 0.054 0.946 10 C -0.543 4.543 11 H 0.056 0.944 12 C 0.070 3.930 13 N -0.885 5.885 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.107 4.107 19 C -0.139 4.139 20 C 0.504 3.496 21 O -0.519 6.519 22 O -0.347 6.347 23 C 0.062 3.938 24 C -0.152 4.152 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.144 0.856 30 H 0.342 0.658 31 H 0.262 0.738 32 H 0.031 0.969 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 8.304 1.233 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.106 4.106 3 C -0.118 4.118 4 H 0.130 0.870 5 C -0.201 4.201 6 C -0.028 4.028 7 N -0.268 5.268 8 C 0.096 3.904 9 H 0.072 0.928 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.133 4.133 13 N -0.523 5.523 14 Si 0.715 3.285 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.145 4.145 19 C -0.196 4.196 20 C 0.348 3.652 21 O -0.407 6.407 22 O -0.263 6.263 23 C -0.012 4.012 24 C -0.209 4.209 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.949 8.157 0.887 9.582 hybrid contribution 2.037 0.607 0.194 2.135 sum -2.912 8.764 1.080 9.298 Atomic orbital electron populations 1.23534 0.95814 1.00927 1.03995 1.22318 0.95174 0.96400 0.96679 1.21667 0.94036 0.97783 0.98275 0.87018 1.23935 0.93435 1.05802 0.96899 1.20902 1.06849 0.85358 0.89712 1.60897 1.58620 1.04401 1.02836 1.19551 0.90383 0.84262 0.96227 0.92831 1.21824 0.92016 0.97796 1.46605 0.92605 1.24884 0.98444 0.95130 0.94818 1.69850 1.34778 1.02260 1.45432 0.86744 0.85868 0.77368 0.78559 1.20333 1.21332 1.20365 1.21514 0.92773 1.01901 0.98337 1.21748 0.99029 0.99533 0.99317 1.22804 0.74157 0.90803 0.77441 1.90594 1.44035 1.53022 1.53053 1.86540 1.67003 1.28614 1.44188 1.22971 1.01036 0.78960 0.98192 1.21792 1.00795 1.01990 0.96334 0.88796 0.89369 0.86242 0.89577 0.83835 0.83940 0.92751 0.94987 0.89071 0.92984 0.95795 0.94343 0.91592 0.91484 0.91304 0.91344 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.20 14.35 29.01 0.42 -2.78 16 2 C -0.09 -1.54 7.98 -36.03 -0.29 -1.83 16 3 C -0.10 -1.77 5.50 -91.77 -0.50 -2.28 16 4 H 0.11 1.95 7.67 -51.93 -0.40 1.56 16 5 C -0.16 -3.12 8.56 -26.73 -0.23 -3.35 16 6 C 0.07 1.28 2.98 -132.76 -0.40 0.89 16 7 N -0.64 -12.99 5.28 -95.41 -0.50 -13.49 16 8 C 0.20 4.57 1.15 -68.86 -0.08 4.49 16 9 H 0.05 1.28 3.43 -51.93 -0.18 1.10 16 10 C -0.54 -13.56 6.90 -34.44 -0.24 -13.80 16 11 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 12 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 13 N -0.89 -23.42 11.33 55.43 0.63 -22.80 16 14 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.11 -2.40 5.42 -26.73 -0.14 -2.55 16 19 C -0.14 -2.71 9.75 37.16 0.36 -2.35 16 20 C 0.50 9.53 7.59 36.00 0.27 9.81 16 21 O -0.52 -10.24 16.01 -18.75 -0.30 -10.54 16 22 O -0.35 -6.03 9.46 -39.26 -0.37 -6.40 16 23 C 0.06 0.83 6.19 37.16 0.23 1.06 16 24 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 25 H 0.09 1.32 8.06 -52.49 -0.42 0.90 16 26 H 0.09 1.30 8.05 -52.48 -0.42 0.88 16 27 H 0.12 2.28 5.84 -52.48 -0.31 1.97 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.14 3.13 5.10 -51.93 -0.26 2.86 16 30 H 0.34 7.08 7.76 -39.29 -0.30 6.78 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 2.29 6.10 -51.93 -0.32 1.97 16 34 H 0.05 1.00 7.57 -51.93 -0.39 0.61 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.04 0.74 7.43 -51.93 -0.39 0.35 16 37 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -26.61 333.16 -7.18 -33.78 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.32 Total: 11.27 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.31 Total: -12.21 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.12 Total: -36.29 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.67 Total: -16.94 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.61 -7.18 -33.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.778 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds