Wall clock time and date at job start Mon Mar 30 2020 01:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 120.00254 * 2 1 4 4 H 1.09005 * 115.56153 * 327.11670 * 3 2 1 5 5 C 1.53001 * 117.50059 * 181.42912 * 3 2 1 6 6 C 1.53004 * 117.50268 * 112.80410 * 3 2 1 7 7 N 1.46893 * 117.49481 * 359.97438 * 6 3 2 8 8 C 1.46906 * 111.00303 * 67.35637 * 7 6 3 9 9 H 1.09000 * 109.46555 * 318.54946 * 8 7 6 10 10 C 1.50705 * 109.46990 * 78.54390 * 8 7 6 11 11 H 1.07997 * 119.99941 * 0.02562 * 10 8 7 12 12 C 1.37882 * 119.99489 * 180.02562 * 10 8 7 13 13 N 1.31509 * 120.00220 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99407 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47271 * 60.00244 * 14 12 10 16 16 H 1.48502 * 109.46746 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46951 * 299.99898 * 14 12 10 18 18 C 1.52996 * 109.47649 * 198.54777 * 8 7 6 19 19 C 1.53002 * 109.46913 * 59.05415 * 18 8 7 20 20 C 1.50695 * 117.49844 * 215.00111 * 6 3 2 21 21 O 1.20825 * 120.00118 * 359.79443 * 20 6 3 22 22 O 1.34232 * 119.99996 * 179.78771 * 20 6 3 23 23 C 1.45198 * 117.00160 * 180.02562 * 22 20 6 24 24 C 1.52995 * 109.47165 * 180.02562 * 23 22 20 25 25 H 1.07999 * 120.00150 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99745 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99745 * 179.97438 * 2 1 3 28 28 H 1.08994 * 117.49845 * 145.01746 * 5 3 2 29 29 H 1.08994 * 117.49795 * 359.97438 * 5 3 2 30 30 H 1.00906 * 111.00295 * 191.30273 * 7 6 3 31 31 H 0.96997 * 119.99749 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.46956 * 299.05701 * 18 8 7 33 33 H 1.08994 * 109.47409 * 179.05424 * 18 8 7 34 34 H 1.09006 * 109.47057 * 300.32312 * 19 18 8 35 35 H 1.09001 * 109.47105 * 180.32536 * 19 18 8 36 36 H 1.09000 * 109.47302 * 60.32225 * 19 18 8 37 37 H 1.09002 * 109.46970 * 300.00033 * 23 22 20 38 38 H 1.08996 * 109.47553 * 59.99710 * 23 22 20 39 39 H 1.09002 * 109.47161 * 299.99864 * 24 23 22 40 40 H 1.09002 * 109.47555 * 59.99526 * 24 23 22 41 41 H 1.08997 * 109.47432 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.5836 2.1253 -0.5339 5 6 3.5917 1.2384 -0.0338 6 6 2.8724 1.6539 1.2510 7 7 2.8544 0.6913 2.3605 8 6 3.5403 -0.5535 1.9886 9 1 3.2708 -0.8259 0.9682 10 6 5.0311 -0.3515 2.0776 11 1 5.4292 0.6056 2.3804 12 6 5.8867 -1.3888 1.7722 13 7 5.4018 -2.5541 1.4030 14 14 7.7345 -1.1385 1.8832 15 1 8.1014 -0.7684 3.2737 16 1 8.4278 -2.3968 1.5072 17 1 8.1433 -0.0518 0.9573 18 6 3.1194 -1.6726 2.9433 19 6 1.6029 -1.8617 2.8703 20 6 2.9440 3.1050 1.6510 21 8 2.3781 3.9427 0.9893 22 8 3.6364 3.4669 2.7425 23 6 3.6617 4.8817 3.0681 24 6 4.4934 5.0990 4.3337 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 4.1171 2.0148 -0.5900 29 1 4.0520 0.2507 -0.0557 30 1 3.2590 1.0919 3.1935 31 1 6.0038 -3.2839 1.1886 32 1 3.4039 -1.4076 3.9616 33 1 3.6154 -2.6000 2.6571 34 1 1.1069 -0.9325 3.1510 35 1 1.3023 -2.6550 3.5546 36 1 1.3189 -2.1322 1.8533 37 1 4.1062 5.4367 2.2419 38 1 2.6442 5.2341 3.2366 39 1 4.0493 4.5440 5.1600 40 1 5.5110 4.7468 4.1648 41 1 4.5121 6.1610 4.5783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:14 Heat of formation + Delta-G solvation = -54.214310 kcal Electronic energy + Delta-G solvation = -21678.246016 eV Core-core repulsion = 18559.191427 eV Total energy + Delta-G solvation = -3119.054589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88116 -39.79673 -37.73285 -36.20732 -33.93978 -33.47788 -32.56371 -31.15674 -28.46782 -26.22889 -24.48460 -23.70736 -23.52009 -21.89868 -20.71110 -20.19534 -18.83904 -18.54725 -17.73209 -17.56674 -16.73175 -16.22478 -15.47259 -15.20422 -15.00170 -14.87650 -14.41014 -14.28163 -13.85838 -13.64234 -13.24074 -13.09205 -13.04017 -12.98016 -12.83218 -12.60689 -12.47395 -12.38066 -12.20320 -11.95503 -11.77383 -11.55867 -11.49064 -11.42321 -11.03738 -10.75596 -10.36030 -9.98434 -8.98013 -7.99894 -6.17877 0.90791 1.32807 1.40678 1.43317 1.48655 1.75330 2.44251 3.00974 3.19175 3.39082 3.65783 3.85335 3.92172 3.99142 4.06258 4.29057 4.32343 4.41265 4.65650 4.71113 4.81004 4.83818 4.87597 4.90523 5.00804 5.07940 5.14661 5.24059 5.38235 5.42925 5.50657 5.56359 5.68301 5.82311 5.88872 5.99943 6.12707 6.20155 6.33640 6.61623 6.77432 7.00758 7.50919 8.96215 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.008719 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.095246 B = 3210.757510 C = 4458.098919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 C -0.079 4.079 4 H 0.122 0.878 5 C -0.168 4.168 6 C 0.052 3.948 7 N -0.629 5.629 8 C 0.212 3.788 9 H 0.045 0.955 10 C -0.546 4.546 11 H 0.045 0.955 12 C 0.030 3.970 13 N -0.906 5.906 14 Si 0.936 3.064 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.103 4.103 19 C -0.125 4.125 20 C 0.507 3.493 21 O -0.530 6.530 22 O -0.358 6.358 23 C 0.053 3.947 24 C -0.146 4.146 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.339 0.661 31 H 0.261 0.739 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 9.446 1.602 10.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.132 4.132 3 C -0.098 4.098 4 H 0.140 0.860 5 C -0.206 4.206 6 C -0.042 4.042 7 N -0.258 5.258 8 C 0.105 3.895 9 H 0.062 0.938 10 C -0.585 4.585 11 H 0.063 0.937 12 C -0.171 4.171 13 N -0.545 5.545 14 Si 0.763 3.237 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.142 4.142 19 C -0.182 4.182 20 C 0.351 3.649 21 O -0.419 6.419 22 O -0.275 6.275 23 C -0.020 4.020 24 C -0.203 4.203 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.796 9.310 1.265 11.040 hybrid contribution 2.267 0.306 0.092 2.289 sum -3.530 9.617 1.357 10.334 Atomic orbital electron populations 1.23770 0.94981 1.02397 1.00366 1.22139 0.95864 0.95283 0.99942 1.21670 0.93058 0.98304 0.96766 0.86005 1.23756 0.94751 1.04616 0.97517 1.21049 1.07876 0.85771 0.89523 1.60832 1.57855 1.04028 1.03087 1.19338 0.89197 0.85281 0.95703 0.93777 1.22021 0.93567 0.97112 1.45785 0.93684 1.25435 1.01505 0.95116 0.94997 1.69955 1.35554 1.02674 1.46353 0.85961 0.82306 0.77110 0.78303 1.20294 1.21248 1.20286 1.21388 0.94809 1.00541 0.97485 1.21591 0.96517 1.00290 0.99846 1.22613 0.74167 0.90357 0.77767 1.90577 1.44659 1.53150 1.53536 1.86531 1.66392 1.31165 1.43371 1.23359 1.02222 0.76837 0.99606 1.21828 0.99674 1.04025 0.94751 0.87048 0.88036 0.88224 0.88632 0.86547 0.84321 0.92978 0.95927 0.91760 0.92556 0.94217 0.94221 0.91238 0.90707 0.91341 0.92010 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.08 14.35 67.78 0.97 -4.11 16 2 C -0.11 -3.88 7.98 25.64 0.20 -3.68 16 3 C -0.08 -2.78 5.50 -11.54 -0.06 -2.84 16 4 H 0.12 4.06 7.67 -2.38 -0.02 4.04 16 5 C -0.17 -6.51 8.56 30.60 0.26 -6.24 16 6 C 0.05 1.99 2.98 2.78 0.01 2.00 16 7 N -0.63 -25.52 5.28 -455.78 -2.41 -27.92 16 8 C 0.21 9.69 1.15 44.17 0.05 9.74 16 9 H 0.04 2.15 3.43 -2.39 -0.01 2.14 16 10 C -0.55 -27.65 6.90 25.60 0.18 -27.47 16 11 H 0.04 2.34 7.81 -2.91 -0.02 2.31 16 12 C 0.03 1.55 5.30 84.66 0.45 2.00 16 13 N -0.91 -48.83 11.33 21.45 0.24 -48.59 16 14 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 C -0.10 -4.70 5.42 30.59 0.17 -4.53 16 19 C -0.13 -4.75 9.75 71.98 0.70 -4.05 16 20 C 0.51 18.74 7.59 71.23 0.54 19.28 16 21 O -0.53 -20.23 16.01 21.97 0.35 -19.88 16 22 O -0.36 -12.15 9.46 -51.44 -0.49 -12.63 16 23 C 0.05 1.33 6.19 71.98 0.45 1.78 16 24 C -0.15 -2.77 10.29 71.98 0.74 -2.03 16 25 H 0.11 2.79 8.06 -2.91 -0.02 2.76 16 26 H 0.10 2.65 8.05 -2.91 -0.02 2.63 16 27 H 0.10 3.82 5.84 -2.91 -0.02 3.81 16 28 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.12 5.23 5.10 -2.39 -0.01 5.21 16 30 H 0.34 14.02 7.76 -89.69 -0.70 13.32 16 31 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 3.28 6.10 -2.39 -0.01 3.27 16 34 H 0.06 2.08 7.57 -2.38 -0.02 2.06 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.48 7.43 -2.39 -0.02 1.46 16 37 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 38 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -56.20 333.16 4.70 -51.50 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.32 Total: 33.51 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.65 Total: -20.16 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -2.17 Total: -76.52 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.14 Total: -32.51 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -56.20 4.70 -51.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.714 kcal (2) G-P(sol) polarization free energy of solvation -56.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds