Wall clock time and date at job start Mon Mar 30 2020 00:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.67834 * 2 1 4 4 C 1.54992 * 110.62029 * 237.03032 * 2 1 3 5 5 C 1.54815 * 102.09334 * 204.47592 * 4 2 1 6 6 C 1.54103 * 104.18489 * 20.88287 * 5 4 2 7 7 H 1.09002 * 109.87486 * 242.45360 * 6 5 4 8 8 C 1.53005 * 109.87655 * 121.45436 * 6 5 4 9 9 C 1.52997 * 109.46822 * 174.99921 * 8 6 5 10 10 C 1.50694 * 109.47152 * 180.02562 * 9 8 6 11 11 O 1.21296 * 120.00098 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00196 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99726 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99521 * 137.81212 * 13 12 10 15 15 C 1.38945 * 120.00047 * 317.80288 * 13 12 10 16 16 N 1.31411 * 119.99872 * 160.45915 * 15 13 12 17 17 Si 1.86797 * 120.00278 * 340.45659 * 15 13 12 18 18 H 1.48500 * 109.46912 * 94.30990 * 17 15 13 19 19 H 1.48501 * 109.47414 * 214.30940 * 17 15 13 20 20 H 1.48502 * 109.47199 * 334.31410 * 17 15 13 21 21 C 1.46501 * 120.00062 * 359.97438 * 12 10 9 22 22 C 1.52992 * 117.49882 * 241.40203 * 21 12 10 23 23 C 1.52991 * 117.49744 * 172.77855 * 21 12 10 24 24 O 1.43743 * 107.29348 * 2.02779 * 6 5 4 25 25 H 1.08996 * 109.47232 * 182.96723 * 1 2 3 26 26 H 1.08996 * 109.47565 * 302.96703 * 1 2 3 27 27 H 1.09007 * 109.46802 * 62.97200 * 1 2 3 28 28 H 1.08998 * 110.90689 * 86.27872 * 4 2 1 29 29 H 1.09008 * 110.93989 * 322.69045 * 4 2 1 30 30 H 1.08995 * 110.48555 * 262.20502 * 5 4 2 31 31 H 1.08997 * 110.59943 * 139.61238 * 5 4 2 32 32 H 1.08994 * 109.47173 * 54.99790 * 8 6 5 33 33 H 1.09001 * 109.46970 * 294.99441 * 8 6 5 34 34 H 1.09001 * 109.47402 * 59.99628 * 9 8 6 35 35 H 1.09004 * 109.47091 * 300.00041 * 9 8 6 36 36 H 0.97006 * 120.00056 * 180.02562 * 16 15 13 37 37 H 1.09001 * 115.55895 * 27.09208 * 21 12 10 38 38 H 1.09003 * 117.50059 * 145.02377 * 22 21 12 39 39 H 1.08999 * 117.50340 * 359.97438 * 22 21 12 40 40 H 1.08996 * 117.50391 * 359.97438 * 23 21 12 41 41 H 1.09007 * 117.49826 * 214.97960 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7894 -1.2170 5 6 3.4795 -1.2168 -0.7233 6 6 3.3839 -1.1254 0.8120 7 1 4.0872 -0.3800 1.1834 8 6 3.6934 -2.4883 1.4346 9 6 3.7185 -2.3588 2.9589 10 6 4.0240 -3.7010 3.5721 11 8 4.2045 -4.6662 2.8600 12 7 4.0978 -3.8288 4.9117 13 6 4.3752 -5.0501 5.4696 14 1 5.0615 -5.1208 6.3004 15 6 3.7733 -6.1967 4.9660 16 7 4.2970 -7.3764 5.2132 17 14 2.2196 -6.0615 3.9379 18 1 2.5804 -6.0288 2.4978 19 1 1.3469 -7.2334 4.2031 20 1 1.4964 -4.8147 4.2954 21 6 3.8815 -2.6628 5.7718 22 6 5.0387 -2.2240 6.6713 23 6 3.8102 -2.9019 7.2813 24 8 2.0383 -0.7352 1.1338 25 1 -0.3633 -1.0262 0.0532 26 1 -0.3634 0.5592 0.8621 27 1 -0.3633 0.4670 -0.9155 28 1 2.1510 -0.1478 -2.0949 29 1 1.4551 -1.6607 -1.4264 30 1 4.2406 -0.5333 -1.0995 31 1 3.6998 -2.2387 -1.0317 32 1 4.6649 -2.8359 1.0834 33 1 2.9245 -3.2039 1.1434 34 1 2.7469 -2.0111 3.3100 35 1 4.4874 -1.6432 3.2501 36 1 3.8770 -8.1769 4.8614 37 1 3.2442 -1.8828 5.3552 38 1 5.1628 -1.1554 6.8464 39 1 5.9609 -2.8032 6.6235 40 1 3.9238 -3.9267 7.6345 41 1 3.1261 -2.2791 7.8578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075195317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:19 Heat of formation + Delta-G solvation = -76.539282 kcal Electronic energy + Delta-G solvation = -21187.149765 eV Core-core repulsion = 18067.127093 eV Total energy + Delta-G solvation = -3120.022672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06459 -40.39244 -38.10353 -35.22025 -34.58289 -33.39317 -33.15356 -31.55507 -28.23935 -26.31351 -24.03114 -23.14730 -22.81807 -22.15702 -21.84470 -21.03177 -18.79545 -17.82913 -17.45423 -17.36885 -16.84698 -16.10695 -15.89915 -15.59580 -15.28206 -14.82406 -14.74082 -14.69297 -14.13655 -13.85749 -13.55456 -13.32284 -13.03025 -12.97243 -12.65611 -12.55637 -12.47751 -12.23265 -12.15360 -11.99025 -11.76950 -11.68033 -11.61998 -11.45352 -11.27182 -10.75781 -10.54720 -10.29190 -9.36691 -8.44614 -6.17605 1.17805 1.31616 1.45542 1.92202 2.40081 2.64096 2.89110 2.95758 3.24106 3.64259 3.68548 3.91570 4.00795 4.03974 4.07806 4.14860 4.20979 4.31206 4.32773 4.46289 4.53501 4.63251 4.70057 4.72036 4.82397 4.88196 4.94068 4.97561 5.01691 5.12498 5.18137 5.22620 5.26212 5.29600 5.33324 5.46121 5.69405 5.83116 6.11363 6.75039 6.91235 7.35097 7.89265 8.64558 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.005831 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.606847 B = 4800.915732 C = 5384.510932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.154 4.154 6 C 0.082 3.918 7 H 0.088 0.912 8 C -0.097 4.097 9 C -0.117 4.117 10 C 0.443 3.557 11 O -0.592 6.592 12 N -0.456 5.456 13 C -0.337 4.337 14 H 0.067 0.933 15 C 0.045 3.955 16 N -0.912 5.912 17 Si 0.960 3.040 18 H -0.277 1.277 19 H -0.304 1.304 20 H -0.268 1.268 21 C 0.039 3.961 22 C -0.174 4.174 23 C -0.174 4.174 24 O -0.396 6.396 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.272 0.728 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 20.647 -9.239 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 H 0.104 0.896 4 C -0.185 4.185 5 C -0.191 4.191 6 C 0.024 3.976 7 H 0.106 0.894 8 C -0.135 4.135 9 C -0.157 4.157 10 C 0.235 3.765 11 O -0.477 6.477 12 N -0.176 5.176 13 C -0.464 4.464 14 H 0.085 0.915 15 C -0.159 4.159 16 N -0.550 5.550 17 Si 0.790 3.210 18 H -0.204 1.204 19 H -0.233 1.233 20 H -0.193 1.193 21 C -0.065 4.065 22 C -0.213 4.213 23 C -0.212 4.212 24 O -0.316 6.316 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.163 0.837 38 H 0.152 0.848 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.334 19.933 -9.381 22.667 hybrid contribution -0.274 -1.085 -0.247 1.146 sum -5.608 18.848 -9.628 21.895 Atomic orbital electron populations 1.21798 0.92784 1.02301 1.03406 1.23362 0.95706 0.95769 0.84622 0.89631 1.23185 0.95522 1.00753 0.99044 1.23024 0.98889 1.03183 0.94022 1.22787 0.84753 0.94927 0.95086 0.89408 1.21483 1.01798 0.96477 0.93706 1.21547 1.04191 0.93523 0.96390 1.21483 0.80470 0.91962 0.82577 1.90493 1.53931 1.42237 1.61084 1.43395 1.62622 1.07531 1.04071 1.18567 1.26256 0.82959 1.18586 0.91528 1.25867 0.99431 0.94500 0.96085 1.69832 1.39744 0.99030 1.46395 0.85581 0.78515 0.76689 0.80209 1.20434 1.23331 1.19308 1.22192 1.03327 0.91324 0.89625 1.23293 0.92607 1.01778 1.03582 1.23192 1.01644 1.01977 0.94360 1.88899 1.28443 1.73954 1.40338 0.93365 0.91963 0.88901 0.87820 0.91620 0.88307 0.91299 0.90740 0.94003 0.88773 0.86911 0.91906 0.83704 0.84846 0.91337 0.90677 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.66 71.98 0.69 -1.73 16 2 C 0.06 1.17 3.98 31.28 0.12 1.29 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.15 -2.52 6.59 31.90 0.21 -2.31 16 5 C -0.15 -3.00 6.64 31.59 0.21 -2.79 16 6 C 0.08 2.00 3.41 30.97 0.11 2.10 16 7 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 8 C -0.10 -3.19 3.99 30.60 0.12 -3.07 16 9 C -0.12 -4.09 4.18 29.85 0.12 -3.97 16 10 C 0.44 21.54 5.89 87.65 0.52 22.06 16 11 O -0.59 -34.24 11.42 -3.08 -0.04 -34.28 16 12 N -0.46 -22.40 2.51 -613.16 -1.54 -23.94 16 13 C -0.34 -19.85 8.35 84.04 0.70 -19.15 16 14 H 0.07 4.17 7.50 -2.91 -0.02 4.15 16 15 C 0.04 2.80 4.84 84.93 0.41 3.21 16 16 N -0.91 -59.34 13.96 21.66 0.30 -59.04 16 17 Si 0.96 53.52 24.81 68.60 1.70 55.23 16 18 H -0.28 -16.38 6.27 99.48 0.62 -15.76 16 19 H -0.30 -16.36 7.11 99.48 0.71 -15.66 16 20 H -0.27 -14.15 7.11 99.48 0.71 -13.44 16 21 C 0.04 1.44 5.96 44.99 0.27 1.71 16 22 C -0.17 -5.40 10.29 30.59 0.31 -5.08 16 23 C -0.17 -5.86 9.80 30.59 0.30 -5.56 16 24 O -0.40 -10.55 10.54 -148.98 -1.57 -12.12 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.27 8.06 -2.38 -0.02 1.25 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.51 7.70 -2.39 -0.02 1.50 16 32 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 33 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 34 H 0.09 3.14 7.33 -2.39 -0.02 3.12 16 35 H 0.11 3.23 8.11 -2.38 -0.02 3.21 16 36 H 0.27 16.73 8.31 -92.70 -0.77 15.96 16 37 H 0.15 4.26 6.84 -2.39 -0.02 4.25 16 38 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.07 3.10 6.80 -2.39 -0.02 3.08 16 41 H 0.13 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -78.32 325.57 3.87 -74.45 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.91 Total: 12.98 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.10 Total: -13.28 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.24 Total: -82.98 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.61 Total: -46.40 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 1.70 Total: 55.23 kcal Total: -78.32 3.87 -74.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075195317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.087 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds