Wall clock time and date at job start Mon Mar 30 2020 00:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.89804 * 2 1 4 4 C 1.54381 * 109.83251 * 239.06849 * 2 1 3 5 5 C 1.55307 * 102.25442 * 219.12824 * 4 2 1 6 6 C 1.54953 * 100.93871 * 34.13360 * 5 4 2 7 7 H 1.08995 * 110.31076 * 82.47274 * 6 5 4 8 8 C 1.53000 * 110.38725 * 204.59765 * 6 5 4 9 9 C 1.53004 * 109.46684 * 182.21277 * 8 6 5 10 10 C 1.50705 * 109.46919 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99906 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99651 * 179.97438 * 10 9 8 13 13 C 1.37089 * 119.99557 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99992 * 222.42899 * 13 12 10 15 15 C 1.38956 * 120.00419 * 42.43424 * 13 12 10 16 16 N 1.31413 * 119.99441 * 19.29577 * 15 13 12 17 17 Si 1.86794 * 120.00513 * 199.29707 * 15 13 12 18 18 H 1.48504 * 109.46906 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47321 * 119.99671 * 17 15 13 20 20 H 1.48496 * 109.47029 * 240.00108 * 17 15 13 21 21 C 1.46496 * 120.00036 * 0.02562 * 12 10 9 22 22 C 1.53004 * 117.49803 * 183.38605 * 21 12 10 23 23 C 1.53003 * 117.49756 * 114.73311 * 21 12 10 24 24 O 1.43235 * 109.83198 * 120.93226 * 2 1 3 25 25 H 1.08999 * 109.47205 * 300.51494 * 1 2 3 26 26 H 1.08994 * 109.47108 * 60.52534 * 1 2 3 27 27 H 1.09007 * 109.46728 * 180.51962 * 1 2 3 28 28 H 1.08999 * 110.84626 * 337.31967 * 4 2 1 29 29 H 1.09003 * 110.85047 * 100.93687 * 4 2 1 30 30 H 1.08995 * 111.12203 * 276.21292 * 5 4 2 31 31 H 1.08995 * 111.12292 * 152.04808 * 5 4 2 32 32 H 1.08997 * 109.47316 * 302.21345 * 8 6 5 33 33 H 1.08997 * 109.47520 * 62.21907 * 8 6 5 34 34 H 1.08997 * 109.47300 * 300.00078 * 9 8 6 35 35 H 1.09009 * 109.47021 * 60.00262 * 9 8 6 36 36 H 0.97002 * 119.99748 * 174.75589 * 16 15 13 37 37 H 1.09000 * 115.55243 * 329.06100 * 21 12 10 38 38 H 1.09000 * 117.49879 * 0.02562 * 22 21 12 39 39 H 1.09005 * 117.49661 * 145.01596 * 22 21 12 40 40 H 1.09003 * 117.49494 * 214.98310 * 23 21 12 41 41 H 1.08995 * 117.49685 * 359.96803 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0538 -0.7465 -1.2457 5 6 3.2731 -1.5221 -0.6768 6 6 2.7748 -1.8444 0.7546 7 1 2.1402 -2.7305 0.7436 8 6 3.9613 -2.0536 1.6976 9 6 3.4468 -2.4243 3.0900 10 6 4.6155 -2.6310 4.0188 11 8 5.7483 -2.4946 3.6076 12 7 4.4017 -2.9662 5.3066 13 6 5.4648 -3.1537 6.1516 14 1 5.4646 -3.9825 6.8441 15 6 6.5426 -2.2774 6.1173 16 7 6.4041 -1.0863 5.5796 17 14 8.1884 -2.7923 6.8353 18 1 8.0826 -4.1710 7.3768 19 1 9.2252 -2.7555 5.7729 20 1 8.5655 -1.8596 7.9275 21 6 3.0333 -3.1303 5.8033 22 6 2.8538 -3.4334 7.2923 23 6 2.6079 -4.5297 6.2527 24 8 2.0160 -0.6926 1.1558 25 1 -0.3633 0.5218 0.8853 26 1 -0.3633 0.5056 -0.8946 27 1 -0.3633 -1.0277 0.0093 28 1 1.3013 -1.4348 -1.6303 29 1 2.3672 -0.0425 -2.0166 30 1 4.1621 -0.8919 -0.6507 31 1 3.4573 -2.4348 -1.2434 32 1 4.5907 -2.8578 1.3168 33 1 4.5436 -1.1342 1.7584 34 1 2.8173 -1.6201 3.4708 35 1 2.8644 -3.3438 3.0293 36 1 7.1322 -0.4469 5.6231 37 1 2.2805 -2.5056 5.3225 38 1 3.7538 -3.5102 7.9023 39 1 1.9827 -3.0082 7.7910 40 1 1.5752 -4.8254 6.0678 41 1 3.3460 -5.3282 6.1783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075195319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:23 Heat of formation + Delta-G solvation = -56.612943 kcal Electronic energy + Delta-G solvation = -21019.363371 eV Core-core repulsion = 17900.204770 eV Total energy + Delta-G solvation = -3119.158601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.56995 -38.41179 -36.04301 -33.54285 -32.54884 -32.15454 -30.91092 -30.07699 -26.56021 -24.67543 -22.62498 -21.62269 -21.41813 -21.01034 -20.28896 -18.83507 -16.85876 -16.40788 -15.95422 -15.58784 -14.66472 -14.42266 -14.21736 -13.90545 -13.78066 -13.48573 -13.15958 -12.74610 -12.67577 -12.25556 -11.94691 -11.78774 -11.63810 -11.25311 -10.98531 -10.89152 -10.84330 -10.80615 -10.66177 -10.55739 -10.42924 -10.16514 -10.03113 -9.87147 -9.64880 -9.30687 -8.63629 -7.84979 -6.91554 -6.01571 -3.74946 3.34386 3.43819 3.45900 3.89914 4.25912 4.35627 4.52869 4.74053 4.78542 4.87405 5.00705 5.19081 5.26262 5.30345 5.39277 5.51571 5.59177 5.61935 5.67018 5.68772 5.81216 5.84116 5.87761 5.98699 6.02036 6.04418 6.15921 6.24324 6.28369 6.31110 6.38317 6.60329 6.75858 6.87425 6.89723 7.00312 7.30092 7.70332 8.36562 9.17239 9.29004 9.78997 10.44039 11.07611 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.005085 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.361083 B = 5505.047796 C = 6284.397784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.073 3.927 3 H 0.076 0.924 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.081 3.919 7 H 0.066 0.934 8 C -0.095 4.095 9 C -0.127 4.127 10 C 0.481 3.519 11 O -0.536 6.536 12 N -0.432 5.432 13 C -0.349 4.349 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.831 5.831 17 Si 0.910 3.090 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.286 1.286 21 C 0.078 3.922 22 C -0.176 4.176 23 C -0.209 4.209 24 O -0.370 6.370 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.262 0.738 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 -0.369 -9.907 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.093 0.907 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.024 3.976 7 H 0.084 0.916 8 C -0.133 4.133 9 C -0.168 4.168 10 C 0.269 3.731 11 O -0.414 6.414 12 N -0.153 5.153 13 C -0.476 4.476 14 H 0.094 0.906 15 C -0.137 4.137 16 N -0.465 5.465 17 Si 0.737 3.263 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.213 1.213 21 C -0.028 4.028 22 C -0.213 4.213 23 C -0.248 4.248 24 O -0.289 6.289 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.570 -0.069 -10.026 14.569 hybrid contribution 0.645 -0.148 0.243 0.705 sum -9.925 -0.217 -9.783 13.938 Atomic orbital electron populations 1.22137 0.95332 1.02367 1.01993 1.22672 0.93989 0.96467 0.85330 0.90652 1.23181 0.98038 0.99671 0.98026 1.23309 0.98455 1.01012 0.96225 1.23094 0.92703 0.88652 0.93126 0.91628 1.21405 0.95161 1.03130 0.93585 1.21519 0.98502 1.01552 0.95243 1.19865 0.89537 0.81629 0.82042 1.90504 1.24280 1.51504 1.75073 1.42827 1.01891 1.63427 1.07136 1.18876 0.96393 1.11665 1.20693 0.90627 1.25200 0.99395 0.93968 0.95170 1.69859 1.32226 1.04127 1.40246 0.86191 0.83568 0.78536 0.77974 1.19665 1.20738 1.21296 1.21682 0.88644 0.96341 0.96178 1.23066 1.02771 1.02624 0.92882 1.23312 1.00824 0.94196 1.06456 1.88506 1.70538 1.40511 1.29391 0.91952 0.91956 0.92336 0.90705 0.90429 0.90106 0.90134 0.90569 0.90665 0.90328 0.91311 0.92802 0.87924 0.87590 0.89885 0.89893 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.44 37.16 0.35 -1.26 16 2 C 0.07 0.88 4.16 -26.01 -0.11 0.77 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.15 -1.52 6.54 -24.78 -0.16 -1.68 16 5 C -0.15 -1.80 6.57 -24.48 -0.16 -1.96 16 6 C 0.08 1.19 3.43 -25.70 -0.09 1.10 16 7 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 8 C -0.09 -1.74 4.25 -26.73 -0.11 -1.85 16 9 C -0.13 -2.59 4.23 -27.88 -0.12 -2.71 16 10 C 0.48 12.60 6.97 -10.98 -0.08 12.53 16 11 O -0.54 -16.10 13.60 5.55 0.08 -16.02 16 12 N -0.43 -11.20 2.85 -107.73 -0.31 -11.51 16 13 C -0.35 -9.83 8.00 -14.93 -0.12 -9.95 16 14 H 0.08 2.06 7.18 -52.48 -0.38 1.69 16 15 C 0.07 2.12 4.35 -17.46 -0.08 2.04 16 16 N -0.83 -25.41 11.64 55.50 0.65 -24.77 16 17 Si 0.91 22.48 29.60 -169.99 -5.03 17.44 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.08 1.63 5.88 -67.93 -0.40 1.24 16 22 C -0.18 -3.30 9.80 -26.70 -0.26 -3.57 16 23 C -0.21 -3.71 10.36 -26.70 -0.28 -3.99 16 24 O -0.37 -5.83 10.35 -35.23 -0.36 -6.20 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.07 0.66 7.85 -51.93 -0.41 0.26 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 34 H 0.08 1.61 7.33 -51.93 -0.38 1.23 16 35 H 0.07 1.24 8.11 -51.92 -0.42 0.82 16 36 H 0.26 7.65 8.32 -40.82 -0.34 7.31 16 37 H 0.10 1.97 6.95 -51.93 -0.36 1.61 16 38 H 0.11 2.19 6.68 -51.93 -0.35 1.85 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -33.64 331.43 -8.51 -42.15 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.92 Total: 3.20 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.61 Total: -9.30 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.34 Total: -36.27 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.29 Total: -22.22 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.64 -8.51 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075195319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.463 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds