Wall clock time and date at job start Mon Mar 30 2020 00:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.98871 * 2 1 4 4 O 1.43748 * 109.87927 * 238.91421 * 2 1 3 5 5 C 1.44376 * 106.97549 * 267.09037 * 4 2 1 6 6 C 1.55231 * 103.56893 * 320.01138 * 5 4 2 7 7 C 1.54101 * 109.87643 * 121.08431 * 2 1 3 8 8 H 1.09000 * 110.49050 * 358.58483 * 7 2 1 9 9 C 1.50704 * 110.48661 * 236.07184 * 7 2 1 10 10 O 1.21282 * 119.99702 * 331.55133 * 9 7 2 11 11 N 1.34773 * 120.00255 * 151.55723 * 9 7 2 12 12 C 1.46498 * 119.99905 * 5.09980 * 11 9 7 13 13 C 1.50696 * 109.47698 * 265.90015 * 12 11 9 14 14 H 1.08004 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00417 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00289 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47015 * 59.99993 * 17 15 13 19 19 H 1.48500 * 109.47310 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47025 * 300.00072 * 17 15 13 21 21 C 1.46498 * 119.99848 * 185.10998 * 11 9 7 22 22 C 1.53002 * 109.46783 * 273.01041 * 21 11 9 23 23 C 1.53001 * 117.49910 * 175.00466 * 22 21 11 24 24 C 1.53003 * 60.03414 * 107.50091 * 23 22 21 25 25 H 1.09002 * 109.47495 * 298.91448 * 1 2 3 26 26 H 1.09004 * 109.47360 * 58.92155 * 1 2 3 27 27 H 1.09006 * 109.46880 * 178.91520 * 1 2 3 28 28 H 1.09001 * 110.62358 * 78.43825 * 5 4 2 29 29 H 1.08997 * 110.62143 * 201.44065 * 5 4 2 30 30 H 1.09001 * 110.88945 * 278.75248 * 6 5 4 31 31 H 1.08997 * 111.02336 * 155.07054 * 6 5 4 32 32 H 1.09005 * 109.47272 * 25.90386 * 12 11 9 33 33 H 1.09003 * 109.46988 * 145.89607 * 12 11 9 34 34 H 0.96998 * 120.00387 * 180.02562 * 16 15 13 35 35 H 1.09005 * 109.46836 * 153.01809 * 21 11 9 36 36 H 1.08997 * 109.47337 * 33.01192 * 21 11 9 37 37 H 1.08993 * 115.56189 * 29.31218 * 22 21 11 38 38 H 1.09002 * 117.49472 * 359.97438 * 23 22 21 39 39 H 1.08997 * 117.49760 * 215.00311 * 23 22 21 40 40 H 1.08999 * 117.49384 * 107.47733 * 24 23 22 41 41 H 1.09000 * 117.49795 * 252.47502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 2.2280 -2.0714 -0.7647 6 6 2.8317 -1.9544 0.6606 7 6 2.0539 -0.7482 1.2411 8 1 1.2237 -1.0911 1.8586 9 6 2.9743 0.1372 2.0413 10 8 3.6105 1.0085 1.4873 11 7 3.0904 -0.0394 3.3723 12 6 2.4098 -1.1607 4.0246 13 6 1.0721 -0.7023 4.5455 14 1 0.7603 0.3221 4.4051 15 6 0.2469 -1.5903 5.2022 16 7 0.6273 -2.8374 5.3745 17 14 -1.4109 -1.0218 5.8486 18 1 -2.2401 -0.5294 4.7193 19 1 -2.1003 -2.1583 6.5108 20 1 -1.2101 0.0744 6.8300 21 6 3.8970 0.8903 4.1669 22 6 5.3550 0.4263 4.1699 23 6 6.3830 1.3316 4.8513 24 6 5.9642 0.0174 5.5134 25 1 -0.3634 0.4969 0.8996 26 1 -0.3634 0.5305 -0.8802 27 1 -0.3633 -1.0276 -0.0195 28 1 1.2814 -2.6109 -0.7355 29 1 2.9295 -2.5613 -1.4400 30 1 3.8999 -1.7425 0.6141 31 1 2.6404 -2.8566 1.2415 32 1 2.2628 -1.9654 3.3041 33 1 3.0181 -1.5223 4.8537 34 1 0.0466 -3.4623 5.8362 35 1 3.5213 0.9144 5.1899 36 1 3.8341 1.8882 3.7330 37 1 5.6758 -0.1219 3.2842 38 1 6.0207 2.2580 5.2971 39 1 7.3801 1.3793 4.4137 40 1 6.6856 -0.7996 5.5108 41 1 5.3266 0.0790 6.3953 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092412014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:02 Heat of formation + Delta-G solvation = -82.584496 kcal Electronic energy + Delta-G solvation = -21531.295412 eV Core-core repulsion = 18411.010600 eV Total energy + Delta-G solvation = -3120.284812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58322 -39.73715 -38.16611 -36.46072 -34.43622 -33.43249 -32.17808 -29.75281 -28.53644 -26.96618 -24.91745 -23.23308 -23.04004 -22.63503 -21.54858 -19.90449 -18.64736 -18.29179 -17.66722 -17.01826 -16.76709 -16.29605 -16.00530 -15.86415 -15.25740 -14.77372 -14.52480 -14.29851 -14.15349 -13.67352 -13.65167 -13.51641 -12.97827 -12.88758 -12.83018 -12.63115 -12.60554 -12.38749 -12.35966 -12.10714 -11.88768 -11.77531 -11.71706 -11.36794 -10.83862 -10.72201 -10.63634 -10.51500 -9.49935 -8.19983 -6.34677 1.42891 1.44223 1.51081 1.64412 2.20830 2.42591 2.91144 2.93193 3.10429 3.56157 3.62204 3.79426 3.86292 3.99521 4.09252 4.16441 4.23226 4.31336 4.38545 4.40011 4.65251 4.67957 4.70960 4.74698 4.79582 4.83495 4.87611 4.94795 4.99608 4.99727 5.12755 5.21171 5.23971 5.25087 5.25793 5.66359 5.82692 5.91899 6.05064 6.54943 6.79573 7.26007 7.39557 8.85206 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.009539 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.498387 B = 2934.503826 C = 4870.638611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.091 3.909 3 H 0.083 0.917 4 O -0.386 6.386 5 C 0.050 3.950 6 C -0.134 4.134 7 C -0.140 4.140 8 H 0.110 0.890 9 C 0.520 3.480 10 O -0.590 6.590 11 N -0.592 5.592 12 C 0.255 3.745 13 C -0.548 4.548 14 H 0.052 0.948 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 0.951 3.049 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.151 3.849 22 C -0.180 4.180 23 C -0.157 4.157 24 C -0.173 4.173 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 1.505 -4.712 6.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.033 3.967 3 H 0.101 0.899 4 O -0.305 6.305 5 C -0.026 4.026 6 C -0.173 4.173 7 C -0.162 4.162 8 H 0.128 0.872 9 C 0.309 3.691 10 O -0.473 6.473 11 N -0.321 5.321 12 C 0.134 3.866 13 C -0.587 4.587 14 H 0.071 0.929 15 C -0.174 4.174 16 N -0.554 5.554 17 Si 0.777 3.223 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.200 1.200 21 C 0.028 3.972 22 C -0.200 4.200 23 C -0.195 4.195 24 C -0.209 4.209 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.166 1.857 -5.081 6.828 hybrid contribution -0.895 -0.030 0.926 1.288 sum 3.271 1.827 -4.156 5.595 Atomic orbital electron populations 1.22218 0.93696 1.03242 1.02830 1.22584 0.94723 0.96428 0.82945 0.89873 1.88839 1.86357 1.22022 1.33322 1.23754 1.01055 0.83669 0.94093 1.23083 0.99709 0.96885 0.97580 1.22769 0.99306 0.96620 0.97462 0.87230 1.20577 0.82007 0.83959 0.82511 1.90578 1.48804 1.36982 1.70931 1.48190 1.47849 1.29527 1.06539 1.19106 0.90973 0.83865 0.92661 1.21614 1.02684 0.96749 1.37614 0.92943 1.25573 1.01358 0.94773 0.95682 1.69992 1.38654 1.04383 1.42407 0.85709 0.79956 0.77863 0.78804 1.19468 1.20736 1.19969 1.20901 0.88381 0.92226 0.95655 1.22561 0.94294 1.06070 0.97064 1.23005 0.98991 0.94704 1.02776 1.23094 1.03483 0.99060 0.95310 0.91785 0.90565 0.91445 0.90404 0.86565 0.91400 0.88665 0.94781 0.96314 0.92288 0.90373 0.91592 0.89875 0.87785 0.87502 0.88086 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 9.30 71.98 0.67 -4.14 16 2 C 0.09 3.17 3.61 30.97 0.11 3.28 16 3 H 0.08 3.21 6.87 -2.39 -0.02 3.19 16 4 O -0.39 -12.85 11.19 -148.98 -1.67 -14.52 16 5 C 0.05 1.35 7.67 72.75 0.56 1.91 16 6 C -0.13 -4.25 6.40 31.98 0.20 -4.04 16 7 C -0.14 -5.21 2.09 -10.55 -0.02 -5.24 16 8 H 0.11 4.41 6.01 -2.39 -0.01 4.39 16 9 C 0.52 22.05 6.62 87.66 0.58 22.63 16 10 O -0.59 -27.29 15.42 -3.04 -0.05 -27.34 16 11 N -0.59 -25.13 2.46 -826.15 -2.03 -27.16 16 12 C 0.25 11.90 4.74 85.63 0.41 12.30 16 13 C -0.55 -27.60 8.96 25.60 0.23 -27.37 16 14 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 15 C 0.03 1.38 5.46 84.65 0.46 1.84 16 16 N -0.92 -48.63 13.29 21.44 0.28 -48.35 16 17 Si 0.95 40.46 29.54 68.60 2.03 42.49 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 C 0.15 5.74 5.64 86.38 0.49 6.23 16 22 C -0.18 -5.96 6.00 -10.77 -0.06 -6.03 16 23 C -0.16 -4.01 10.25 30.60 0.31 -3.70 16 24 C -0.17 -4.77 10.18 30.62 0.31 -4.46 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 1.87 8.11 -2.38 -0.02 1.85 16 28 H 0.08 1.85 8.11 -2.39 -0.02 1.83 16 29 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.23 7.86 -2.39 -0.02 2.21 16 31 H 0.09 2.86 7.83 -2.39 -0.02 2.85 16 32 H 0.03 1.63 5.96 -2.38 -0.01 1.61 16 33 H 0.02 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.08 2.95 7.79 -2.38 -0.02 2.93 16 36 H 0.07 2.54 7.59 -2.39 -0.02 2.52 16 37 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.09 2.65 8.04 -2.39 -0.02 2.63 16 Total: -1.00 -58.83 335.52 3.81 -55.02 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 1.00 Total: 26.65 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.25 Total: -6.79 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.75 Total: -75.51 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.71 Total: -41.85 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -58.83 3.81 -55.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092412014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.563 kcal (2) G-P(sol) polarization free energy of solvation -58.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds