Wall clock time and date at job start Mon Mar 30 2020 00:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.67524 * 2 1 4 4 O 1.44420 * 110.65189 * 237.03397 * 2 1 3 5 5 C 1.43746 * 106.99678 * 201.48360 * 4 2 1 6 6 C 1.54100 * 107.29641 * 26.48751 * 5 4 2 7 7 C 1.54807 * 104.18485 * 357.96900 * 6 5 4 8 8 H 1.09006 * 110.90629 * 97.35659 * 7 6 5 9 9 C 1.50704 * 110.90569 * 220.91912 * 7 6 5 10 10 O 1.21291 * 119.99900 * 109.94476 * 9 7 6 11 11 N 1.34771 * 119.99904 * 289.66934 * 9 7 6 12 12 C 1.37101 * 120.00402 * 354.01031 * 11 9 7 13 13 H 1.08001 * 119.99774 * 126.29299 * 12 11 9 14 14 C 1.38943 * 120.00030 * 306.29608 * 12 11 9 15 15 N 1.31411 * 120.00082 * 156.67155 * 14 12 11 16 16 Si 1.86802 * 119.99909 * 336.67166 * 14 12 11 17 17 H 1.48490 * 109.47346 * 92.59690 * 16 14 12 18 18 H 1.48500 * 109.46936 * 212.59760 * 16 14 12 19 19 H 1.48502 * 109.47033 * 332.59452 * 16 14 12 20 20 C 1.46501 * 119.99776 * 174.01200 * 11 9 7 21 21 C 1.54270 * 110.03210 * 242.54866 * 20 11 9 22 22 C 1.54960 * 104.16154 * 217.13610 * 21 20 11 23 23 C 1.54891 * 102.77767 * 37.88524 * 22 21 20 24 24 C 1.53874 * 110.03350 * 125.33119 * 20 11 9 25 25 H 1.09005 * 109.47040 * 297.03927 * 1 2 3 26 26 H 1.08998 * 109.47178 * 57.03305 * 1 2 3 27 27 H 1.08997 * 109.47514 * 177.03151 * 1 2 3 28 28 H 1.08995 * 109.87860 * 267.05957 * 5 4 2 29 29 H 1.09004 * 109.87524 * 145.91277 * 5 4 2 30 30 H 1.08993 * 110.48316 * 239.29053 * 6 5 4 31 31 H 1.09003 * 110.48501 * 116.64740 * 6 5 4 32 32 H 0.97008 * 119.99622 * 180.02562 * 15 14 12 33 33 H 1.09004 * 110.02083 * 3.93529 * 20 11 9 34 34 H 1.09000 * 110.48491 * 335.78089 * 21 20 11 35 35 H 1.08999 * 110.48618 * 98.42673 * 21 20 11 36 36 H 1.09004 * 110.72504 * 279.57328 * 22 21 20 37 37 H 1.09003 * 110.92564 * 156.29654 * 22 21 20 38 38 H 1.09000 * 110.48950 * 203.40194 * 23 22 21 39 39 H 1.09004 * 110.59852 * 80.82139 * 23 22 21 40 40 H 1.08997 * 110.03214 * 238.56713 * 24 20 11 41 41 H 1.08991 * 110.03315 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0393 -0.7354 -1.1338 5 6 3.3845 -1.1262 -0.8112 6 6 3.4794 -1.2175 0.7241 7 6 2.0758 -0.7893 1.2171 8 1 1.4545 -1.6603 1.4262 9 6 2.1796 0.0979 2.4308 10 8 1.9015 1.2755 2.3468 11 7 2.5761 -0.4184 3.6109 12 6 2.7666 -1.7701 3.7386 13 1 3.7058 -2.1500 4.1127 14 6 1.7514 -2.6510 3.3866 15 7 2.0405 -3.8918 3.0647 16 14 -0.0244 -2.0715 3.3711 17 1 -0.3782 -1.5967 2.0094 18 1 -0.9157 -3.1972 3.7500 19 1 -0.1908 -0.9600 4.3418 20 6 2.8036 0.4649 4.7574 21 6 4.2819 0.3955 5.1928 22 6 4.2264 0.4850 6.7388 23 6 2.9665 -0.3468 7.0851 24 6 1.9674 -0.0064 5.9600 25 1 -0.3633 0.4672 0.9154 26 1 -0.3633 0.5592 -0.8622 27 1 -0.3634 -1.0262 -0.0532 28 1 4.0865 -0.3795 -1.1822 29 1 3.6047 -2.0974 -1.2546 30 1 4.2408 -0.5345 1.1005 31 1 3.6967 -2.2401 1.0327 32 1 1.3317 -4.5067 2.8186 33 1 2.5388 1.4898 4.4972 34 1 4.7274 -0.5494 4.8814 35 1 4.8408 1.2359 4.7811 36 1 4.1069 1.5194 7.0613 37 1 5.1164 0.0428 7.1866 38 1 2.5664 -0.0479 8.0540 39 1 3.1973 -1.4121 7.0810 40 1 1.2974 0.7899 6.2840 41 1 1.3927 -0.8926 5.6909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094177543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:10 Heat of formation + Delta-G solvation = -85.324021 kcal Electronic energy + Delta-G solvation = -22489.709658 eV Core-core repulsion = 19369.306051 eV Total energy + Delta-G solvation = -3120.403607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88603 -38.34938 -36.66154 -34.26597 -31.97920 -31.57143 -30.89783 -28.12137 -27.47947 -25.72841 -24.57338 -21.90756 -21.14165 -20.25422 -19.43879 -19.09486 -17.38622 -15.97948 -15.68156 -15.57149 -14.84223 -14.63156 -14.47859 -14.11932 -13.64764 -13.38959 -13.19326 -12.81882 -12.58399 -12.23738 -11.88809 -11.74958 -11.62832 -11.17636 -11.07187 -10.94062 -10.86843 -10.72286 -10.59855 -10.53384 -10.19422 -10.12545 -10.02783 -9.79276 -9.64961 -9.16040 -8.93560 -8.60115 -7.57361 -6.56954 -4.28159 3.07399 3.19919 3.27081 3.61346 4.07847 4.24799 4.46070 4.80191 5.19292 5.24351 5.29791 5.37424 5.47738 5.56117 5.69875 5.83763 5.93157 5.96948 6.03777 6.06754 6.12279 6.14123 6.17962 6.25876 6.30058 6.37655 6.38782 6.41756 6.49996 6.57782 6.59344 6.79025 6.84099 6.88325 6.91306 7.02348 7.42357 7.63176 7.75591 8.42991 8.92413 9.22871 9.67332 10.52135 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.008790 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.610099 B = 3184.543408 C = 3547.255372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.079 0.921 4 O -0.383 6.383 5 C 0.048 3.952 6 C -0.124 4.124 7 C -0.123 4.123 8 H 0.111 0.889 9 C 0.499 3.501 10 O -0.595 6.595 11 N -0.459 5.459 12 C -0.341 4.341 13 H 0.098 0.902 14 C 0.082 3.918 15 N -0.850 5.850 16 Si 0.831 3.169 17 H -0.254 1.254 18 H -0.284 1.284 19 H -0.256 1.256 20 C 0.128 3.872 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.129 4.129 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.276 0.724 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 3.981 0.667 4.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 H 0.097 0.903 4 O -0.302 6.302 5 C -0.029 4.029 6 C -0.162 4.162 7 C -0.145 4.145 8 H 0.129 0.871 9 C 0.288 3.712 10 O -0.480 6.480 11 N -0.180 5.180 12 C -0.468 4.468 13 H 0.115 0.885 14 C -0.127 4.127 15 N -0.484 5.484 16 Si 0.655 3.345 17 H -0.179 1.179 18 H -0.210 1.210 19 H -0.180 1.180 20 C 0.024 3.976 21 C -0.165 4.165 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.167 4.167 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.424 4.308 0.402 4.556 hybrid contribution -0.882 -0.066 0.384 0.964 sum 0.543 4.243 0.787 4.349 Atomic orbital electron populations 1.21780 0.93763 1.02236 1.01935 1.22989 0.94798 0.95492 0.83854 0.90330 1.88790 1.28054 1.74042 1.39338 1.23157 0.84340 0.99541 0.95837 1.22615 0.95999 1.04241 0.93385 1.22751 0.98853 0.99545 0.93315 0.87111 1.20355 0.79074 0.87197 0.84552 1.90522 1.54352 1.17527 1.85595 1.43779 1.60812 1.07065 1.06303 1.18720 1.01322 0.78274 1.48455 0.88462 1.25545 0.98032 0.94864 0.94214 1.69755 1.34039 1.05347 1.39236 0.87717 0.86230 0.79669 0.80855 1.17896 1.20995 1.18012 1.21697 0.93909 0.94952 0.87037 1.22648 0.96987 1.02135 0.94726 1.22431 0.97850 0.99375 0.96197 1.22264 0.95496 1.00351 0.97315 1.22437 0.97988 1.01582 0.94736 0.91201 0.92428 0.92163 0.93118 0.90204 0.91356 0.88472 0.91372 0.90092 0.90231 0.92680 0.92295 0.92183 0.92827 0.91286 0.93078 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.65 37.16 0.32 -2.33 16 2 C 0.09 1.76 3.10 -25.68 -0.08 1.68 16 3 H 0.08 1.64 7.38 -51.93 -0.38 1.25 16 4 O -0.38 -7.54 11.23 -35.23 -0.40 -7.94 16 5 C 0.05 0.84 7.70 37.73 0.29 1.13 16 6 C -0.12 -2.44 5.94 -25.20 -0.15 -2.59 16 7 C -0.12 -2.71 1.55 -89.77 -0.14 -2.84 16 8 H 0.11 2.61 3.55 -51.93 -0.18 2.43 16 9 C 0.50 11.70 5.28 -10.99 -0.06 11.65 16 10 O -0.60 -14.86 15.07 5.55 0.08 -14.77 16 11 N -0.46 -10.47 1.85 -106.54 -0.20 -10.67 16 12 C -0.34 -8.18 6.95 -14.93 -0.10 -8.28 16 13 H 0.10 2.49 7.13 -52.49 -0.37 2.12 16 14 C 0.08 2.03 3.95 -17.47 -0.07 1.96 16 15 N -0.85 -21.84 13.96 55.50 0.77 -21.07 16 16 Si 0.83 19.35 24.17 -169.99 -4.11 15.25 16 17 H -0.25 -5.74 4.64 56.52 0.26 -5.48 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.26 -6.10 6.30 56.52 0.36 -5.74 16 20 C 0.13 2.61 3.29 -66.81 -0.22 2.39 16 21 C -0.13 -2.23 6.43 -25.03 -0.16 -2.39 16 22 C -0.12 -1.79 6.91 -24.70 -0.17 -1.96 16 23 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 24 C -0.13 -2.46 6.25 -25.61 -0.16 -2.62 16 25 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.14 7.52 -51.93 -0.39 0.75 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.32 7.85 -51.93 -0.41 0.91 16 31 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 32 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.08 1.73 6.96 -51.93 -0.36 1.37 16 34 H 0.08 1.51 6.67 -51.93 -0.35 1.17 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.76 5.08 -51.93 -0.26 1.50 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -26.59 307.08 -6.76 -33.35 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.68 Total: 7.50 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.87 Total: -6.27 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.58 Total: -31.74 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.31 Total: -22.71 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.11 Total: 15.25 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.59 -6.76 -33.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094177543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.972 kcal (2) G-P(sol) polarization free energy of solvation -26.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds